BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G17270.1
Length=1958
Score E
Sequences producing significant alignments: (Bits) Value
Ahg920643 jgi|Araly1|920643|scaffold_101924.1 2643 0.0
Ahg949587 jgi|Araly1|949587|scaffold_801474.1 1219 0.0
> Ahg920643 jgi|Araly1|920643|scaffold_101924.1
Length=1797
Score = 2643 bits (1431), Expect = 0.0
Identities = 1685/1801 (94%), Gaps = 44/1801 (2%)
Strand=Plus/Plus
Query 50 CATTGATTACCAGCTCGGCGATGGTGCGCAACTCGTCGGACGAAGAAGAGGACCACCGCA 109
|||||||| |||||||| ||||||||||||||||||||||||| |||||||||||||| |
Sbjct 1 CATTGATTTCCAGCTCGTCGATGGTGCGCAACTCGTCGGACGATGAAGAGGACCACCGGA 60
Query 110 ATTTAATCCCACAAAACGACACCAGAGACAACGATCTC-A-AT----C-T----AC--GC 156
||||||||||||| |||||||||||||||||||||||| | | | | || ||
Sbjct 61 ATTTAATCCCACAGAACGACACCAGAGACAACGATCTCGACCTCCGCCGTGAAGACGAGC 120
Query 157 --C-CT--G-----A-CGCCAGGACCGTAAATATGGCTAACGGCGGTGGCAGGAGTCCGA 205
| || | | ||||||| || |||||| ||||||||||||||||||||||||||
Sbjct 121 TTCACTCCGTCACCACCGCCAGGGCCATAAATAGGGCTAACGGCGGTGGCAGGAGTCCGA 180
Query 206 GATCGGCGTTACAGATCGATGAAATCTTGTCGCGAGCTCGGAATCGTTGGAAAATCTCAG 265
|||||||||| ||||||||||||||| | ||||||||||| || ||||||||||||||||
Sbjct 181 GATCGGCGTTTCAGATCGATGAAATCGTATCGCGAGCTCGAAACCGTTGGAAAATCTCAG 240
Query 266 TTAACAAGCGTTACGTCGTTGCTGCCGTCTCTCTAACTTTATTCGTCGGACT-TCTGTTC 324
|||||||||||||||||||||||||||||||||||||| | ||||| ||| | |||||||
Sbjct 241 TTAACAAGCGTTACGTCGTTGCTGCCGTCTCTCTAACTCTGTTCGTTGGA-TATCTGTTC 299
Query 325 TTATTTACTGATACTCGT--A--CAT-TC------T-TCTCGAGCTTTAAGCTTGATCCA 372
|||||||||||||||||| | | | || | |||||||||||||||||||||||
Sbjct 300 TTATTTACTGATACTCGTAGATTCTTCTCAGTAGATCTCTCGAGCTTTAAGCTTGATCCA 359
Query 373 ATGTCAAGCCGTGTCAAGGAATCTGAGCTCCAAGCTCTGAATCTTCTTAGGCAGCAACAG 432
||||| || || ||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 360 ATGTCGAGTCGGGTCAAGGAATCTGAGCTCCAAGCTCTGAATCTTCTGAGGCAACAACAG 419
Query 433 CTAGCGCTAGTCTCTCTGTTGAACCGTACGAATTTCAATTCTTCGAATGCAATTAGTTCT 492
|| || || |||||||||||||||||| ||| |||||||||||||||||||||| |||||
Sbjct 420 CTCGCACTTGTCTCTCTGTTGAACCGTGCGATTTTCAATTCTTCGAATGCAATTGGTTCT 479
Query 493 TCTGTAGTAATAGACAATGTGAAAGCTGCTCTACTGAAGCAGATTTCAGTGAATAAGGAA 552
|||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 480 TCTGTATTAATAGACAATGTGAAAGCTGCTCTACTGAAGCAGATTTCAGTTAATAAGGAA 539
Query 553 ATCGAAGAAGTGCTTCTTTCACCACACAGGACTGGGAATTACTCTA-TCACTGCTTCTGG 611
|||||||| || |||||||||||||||| ||||||||||||||| | |||||| ||||||
Sbjct 540 ATCGAAGAGGTCCTTCTTTCACCACACAAGACTGGGAATTACTC-AGTCACTGGTTCTGG 598
Query 612 TTCAGATAGTTTCACTGGTTCTTA-TAACGCTGATATATGTAGAAAGGTAGATCAGAAGT 670
|||||||||| ||||||||||||| | ||| ||||| |||| |||||||||||||||||
Sbjct 599 TTCAGATAGTATCACTGGTTCTTACT-ACGATGATAGGTGTAAAAAGGTAGATCAGAAGT 657
Query 671 TGTTGGACCGGAAAACGATCGAATGGAAGCCGAGACCAGATAAGTTCCTATTTGCTATCT 730
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 658 TGTTGGAGCGGAAAACGATCGAATGGAAGCCGAGACCAGATAAGTTCCTTTTTGCTATCT 717
Query 731 GTCTCTCAGGTCAAATGAGTAACCACTTGATTTGTTTAGAGAAACATATGTTCTTTGCTG 790
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 718 GTCTCTCAGGTCAAATGAGTAACCACTTGATTTGCTTAGAGAAACATATGTTCTTTGCTG 777
Query 791 CGCTACTGGATCGAGTTCTTGTGATTCCAAGCTCTAAGTTTGATTACCAGTATGATAAAG 850
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 778 CGCTGCTGGATCGAGTTCTCGTGATTCCAAGCTCTAAGTTTGATTACCAGTATGATAGAG 837
Query 851 TGATTGATATAGAGCGGATTAACACGTGCTTGGGAAGAACTGTTGTCATTTCTTTTGATC 910
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 838 TGATAGATATAGAGCGGATTAATACGTGCTTGGGAAGAACTGTTGTCATTTCTTTTGATC 897
Query 911 AGTTCAAGGAGATTGATAAGAAGAACAATGCTCACATTGACA-GATTCATCTGTTACGTC 969
||||||||||||||||||||||||| |||||||||||||||| | |||||||||||| ||
Sbjct 898 AGTTCAAGGAGATTGATAAGAAGAAAAATGCTCACATTGACACG-TTCATCTGTTACTTC 956
Query 970 TCGTCGCCACAGCCTTGTTATGTTGATGAGGATCATATCAAGAAGCTCAAGGGATTGGGG 1029
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 957 TCATCGCCACAGCCTTGTTATGTGGATGAGGATCATATCAAGAAGCTCAAGGGATTGGGG 1016
Query 1030 GTTTCCATTGGTGGGAAGCTTGAGGCTCCTTGGAGTGAAGATATAAAGAAGCCAACTAAG 1089
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1017 GTTTCCATTGGTGGGAAGCTTGAGGCTCCTTGGATTGAAGATATAAAGAAGCCAACTAAG 1076
Query 1090 CGGACTTCTCAAGAGGTAGTGGAAAAGTTTAAGTCCGATGATGGTGTGATCGCCATAGGG 1149
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1077 CGAACTTCTCAAGAGGTAGTGGAAAAGTTTAAGTCTGATGATGGTGTGATCGCCATAGGG 1136
Query 1150 GATGTCTTCTATGCTGATATGGAGCAAGATTTGGTGATGCAGCCTGGTGGACCCATCAAC 1209
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 GATGTCTTCTATGCTGATATGGAGCAAGATTTGGTGATGCAGCCTGGTGGACCCATCAAT 1196
Query 1210 CATAAATGTAAAACACTGATCGAACCCAGTAGGCTCATTTTGGTGACGGCACAACGATTC 1269
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1197 CACAAATGTAAAACACTGATCGAACCCAGTAGGCTCATTTTGGTGACGGCACAGCGATTC 1256
Query 1270 ATCCAGACATTCTTAGGAAAGAATTTCATCTCGCTTCATCTCCGTAGGCATGGGTTCCTT 1329
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1257 ATCCAGACATTCTTAGGAAAGAATTTCATCTCGCTTCATCTCCGTAGACATGGGTTCCTT 1316
Query 1330 AAGTTCTGCAATGCAAAATCGCCAAGTTGTTTTTATCCCATACCACAAGCTGCAGACTGC 1389
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1317 AAGTTCTGCAATGCAAAATCGCCAAGTTGCTTTTATCCCATACCACAAGCTGCAGACTGC 1376
Query 1390 ATCAGTCGGATGGTGGAAAGGGCCAATGCTCCAGTCATCTACCTTTCAACAGATGCTGCA 1449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1377 ATCAGTCGGATGGTGGAAAGGGCCAATGCTCCAGTCATCTACCTTTCAACAGATGCTGCA 1436
Query 1450 GAAAGCGAAACCGGTCTTCTTCAGTCACTAGTAGTCGTTGATGGAAAAGTCGTTCCCCTT 1509
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1437 GAAAGCGAAACCGGTCTGCTTCAGTCACTAGTAGTCGTTGATGGAAAAGTCGTTCCCCTT 1496
Query 1510 GTCAAACGTCCACCTCAAAACTCTGCAGAAAAGTGGGACTCGTTGTTGTATAGACATGGT 1569
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1497 GTCAAACGTCCACCTCGCAACTCTGCAGAAAAGTGGGACTCGTTGTTGTATAGACATGGT 1556
Query 1570 ATAGAAGATGACTCTCAGGTGTATGCTATGTTGGATAAGACTATATGTGCAATGTCCAGT 1629
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1557 ATAGAAGATGACTCTCAGGTGGATGCTATGTTGGATAAGACTATATGTGCAATGTCCAGT 1616
Query 1630 GTATTCATCGGAGCATCGGGTTCTACTTTTACAGAGGATATCTTGCGGCTAAGAAAAGAC 1689
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1617 GTCTTCATTGGAGCATCGGGTTCTACTTTTACAGAGGATATCTTGCGGCTAAGAAAAGAC 1676
Query 1690 TGGGGAACTTCATCTATGTGCGATGAGTATCTCTGTCGAGGCGAAGAACCAAACTTCATA 1749
|||||||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 1677 TGGGGAACTTCATCGATGTGCGATGAGTATCTCTGTAGAGGTGAAGAACCAAACTTCATA 1736
Query 1750 GCTGAAAATGAATAAACAAGTAAACACATTCGTTAATTTTCCTCTGTTTCCATGGTTCTT 1809
|||||||||||||||| |||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1737 GCTGAAAATGAATAAAAAAGTCAACACATTCGTTAACTTTCCTCTGTTTCCATGGTTCTT 1796
Query 1810 C 1810
|
Sbjct 1797 C 1797
> Ahg949587 jgi|Araly1|949587|scaffold_801474.1
Length=1745
Score = 1219 bits (660), Expect = 0.0
Identities = 1319/1626 (81%), Gaps = 90/1626 (6%)
Strand=Plus/Plus
Query 193 GGCAGGAGTCCGAGATCGGCGTTACAGATCGATGAAATCTTGTC-GCGAGCTCGGAA--T 249
||| ||| || |||||||||||| |||||||| || || ||| | | ||| || ||
Sbjct 135 GGCGGGAATCAGAGATCGGCGTTTCAGATCGAAGACATTTTG-CAGAGAGTTC--AACGC 191
Query 250 CGTTGGAAAATCTCAG-TTAACAAGCGTTACGTCGTTG-CTGCCGTCTCTCTAACTTTAT 307
|||||||| ||||| | | || |||||||||||| ||| || ||||||||||| ||||
Sbjct 192 CGTTGGAAGATCTC-GCTCAATAAGCGTTACGTCATTGTCT-TCGTCTCTCTAA--TTAT 247
Query 308 -TC-GTCGGACTTCTGTTCTTATTTACTGATACTCGT--AC-A---T-T-C----TTCTC 353
|| |||| ||||| |||||| | |||||| ||||| || | | | | |||||
Sbjct 248 CTCAATCGGTCTTCTCTTCTTACTCACTGATCCTCGTGAACTATTTTCTGCGAATTTCTC 307
Query 354 GAGCTTTAAGCTTGATCCAATGTC-AAGCCGTGTCAAGGAATCTGAGCTCCAAGCTCTGA 412
||| |||||||| |||||| |||| || |||||||||||||||||||| | ||| ||
Sbjct 308 GAGTTTTAAGCTGGATCCATTGTCGAA-TCGTGTCAAGGAATCTGAGCTTCGTGCTTTGT 366
Query 413 ATCTTCTTAGGCAGCAACAGCTAGCGCTAGTCTCTCTGTT-GAACCGTAC------GAA- 464
||||||| || || |||||||| ||||| ||||||| || |||| |||| |||
Sbjct 367 ATCTTCTGAGACAACAACAGCTTGCGCTTCTCTCTCT-TTGGAACGGTACGTTGGTGAAT 425
Query 465 --TT-TC--AATTC-TTC---GAATGCAATT-AGTTCTTCTGTAG-TAATAGACAATGTG 513
|| || || || || ||||| | || || || ||||| | | | || |||||
Sbjct 426 CCTTCTCTTAA-TCAATCGGAGAATG-ATTTGAGATCGTCTGT-GTTGTTTGAGGATGTG 482
Query 514 AAAGCTGCTCTACT-GAAGCAGATTTCAGTGAATAAGGAAATCGAAGAA-GTGCTTCTTT 571
||| ||||| || | ||||||||||||| |||||||||| ||| || || |||||||| |
Sbjct 483 AAATCTGCTGTA-TCGAAGCAGATTTCATTGAATAAGGAGATCCAA-AATGTGCTTCTAT 540
Query 572 CACCACACAGGACTGGGAATTACTCTATCACT-GCTTCTGGTTCAGATAGTTTCACTG-- 628
|||||||||||| | | |||||||| | | || | || || | | ||| ||
Sbjct 541 CACCACACAGGAGTAGCAATTACTC---CGGTGGC-AC-GG--AAG-TTGATTCGGTGAA 592
Query 629 GTTCTTATAACGCTGATATATGTAGAAAGGTAGATCAGAAGTTGTTGGACCGGAAAAC-G 687
|||| || | | |||| ||||||||| || ||||||||||||| || |||||||| |
Sbjct 593 TTTCTCAT-A--C-GATAGATGTAGAAAAGTGGATCAGAAGTTGTCAGATCGGAAAACTG 648
Query 688 ATCGAATGGAAGCCGAGACCAGATAAGTTCCTATTTGCTATCTGTCTCTCAGGTCAAATG 747
| || |||||||||||| | |||||||| ||||| ||||| ||||||||||||||||||
Sbjct 649 -TAGAGTGGAAGCCGAGATCGGATAAGTTTCTATTCGCTATATGTCTCTCAGGTCAAATG 707
Query 748 AGTAACCACTTGATTTGTTTAGAGAAACATATGTTCTTTGCTGCGCTACTGGATCGAGTT 807
|||||||| |||||||| |||||||||||||||||||||||||| | |||||||||||
Sbjct 708 AGTAACCATTTGATTTGCTTAGAGAAACATATGTTCTTTGCTGCATTGTTGGATCGAGTT 767
Query 808 CTT-GTGATTCCAAGCTCTAAGTTTGATTACCAGTATGATAAAGTGATTGATATAGAGCG 866
|| ||||| || ||||| |||||||||||||||||||||| |||||| || ||||||||
Sbjct 768 -TTGGTGATACCTAGCTCAAAGTTTGATTACCAGTATGATAGAGTGATAGACATAGAGCG 826
Query 867 GATTAACACGTGCTTGGGAAGAACTGTTGTCATTTCTTTTGATCAGTTCAAGGAGATTGA 926
|||||| || ||||||||| ||| |||||| ||||||||||||| || ||||| | |
Sbjct 827 GATTAATACTTGCTTGGGACGAAATGTTGTTGTTTCTTTTGATCAATTTAAGGAAAAGGC 886
Query 927 TAAGAAGAA-CAATGCTCACATTGACAGATTCATCTGTTACGTCTCGTCGCCACAGCCTT 985
|| ||||| | || || |||||| | ||||| |||||| ||||||| ||||||| ||
Sbjct 887 GAAAAAGAATC-ATTTTCGTATTGACCGGTTCATATGTTACTTCTCGTCACCACAGCTTT 945
Query 986 GTTATGTTGATGAGGATCATATCAAGAAGCTCAAGGGATTGGGGGTTTCCATTGGTGGGA 1045
||||||| |||||||| ||||| |||||||| || || |||||| ||||||||| |||||
Sbjct 946 GTTATGTGGATGAGGAGCATATTAAGAAGCTGAAAGGTTTGGGGATTTCCATTGATGGGA 1005
Query 1046 AGCTTGAGGCTCCTTGGAGTGAAGATATAAAGAAGCCAA-CTAAGCGGACT-TCTCAAGA 1103
||||||||||||||||||||||||| ||||||||||| | | ||| | ||| | |||||
Sbjct 1006 AGCTTGAGGCTCCTTGGAGTGAAGACATAAAGAAGCCGAGC-AAGAGAACTGTG-CAAGA 1063
Query 1104 GGTAGTGGA-AAAGTTTAAGTCCGATGATGGTGTGATCGCCATAGGGGATGTCTTCTATG 1162
||| | | |||||||||||| ||||||| ||||||||||| |||||||| |||||||
Sbjct 1064 CGTACAG-ACAAAGTTTAAGTCTGATGATGACGTGATCGCCATCGGGGATGTTTTCTATG 1122
Query 1163 CTGATATGGAGCAAGATTTGGTGATGCAGCCTGGTGGACCCATCAACCATAAATGTAAAA 1222
|||||||||||||||||| || |||||||||||||||||| || ||||| || || || |
Sbjct 1123 CTGATATGGAGCAAGATTGGGCGATGCAGCCTGGTGGACCTATTAACCACAAGTGCAAGA 1182
Query 1223 CACTGATCGAACCCAGTAGGCTCATTTTGGTGACGGCACA-ACGATTCATCCAGACATTC 1281
| |||||||||||||||| ||| |||||| |||| ||||| | ||||||||||||| |||
Sbjct 1183 CCCTGATCGAACCCAGTAAGCTGATTTTGTTGACCGCACAGA-GATTCATCCAGACCTTC 1241
Query 1282 TTAGGAAAGAATTTCATCTCGCTTCATCTCCGTAGGCATGGGTTCCTTAAGTTCTGCAAT 1341
|| ||||||||||||||| | |||||| | || || ||||||||||| || |||||||||
Sbjct 1242 TTGGGAAAGAATTTCATCGCACTTCATTTTCGCAGACATGGGTTCCTCAAATTCTGCAAT 1301
Query 1342 GCAAAATCGCCAAGTTGTTTTTATCCCATACCACAAGCTGCAGACTGCATCAG-TCGGAT 1400
|||||||| |||||||| || ||||| || |||||||||||||| |||||| | ||||||
Sbjct 1302 GCAAAATCTCCAAGTTGCTTCTATCCAATTCCACAAGCTGCAGAGTGCATC-GCTCGGAT 1360
Query 1401 GGTGGAAAGGGCCAATG-CTCCAGTCATCTACCTTTCAACAGATGCTGCAGAAAGCGAAA 1459
|||||||| |||||| | | ||||||||| ||||||||||||||||||||||| ||||
Sbjct 1361 AGTGGAAAGATCCAATGGCGC-AGTCATCTATCTTTCAACAGATGCTGCAGAAAGTGAAA 1419
Query 1460 CCGGTCTTCTTCAGTCACTAGTAGTCGTTGATGGAAAAGTCGTTCCCCTTGTCAAACGTC 1519
| |||| ||||||||||| || || || ||||||||| | || || |||||||||||||
Sbjct 1420 CAAGTCTGCTTCAGTCACTTGTTGTGGTAGATGGAAAAATTGTGCCTCTTGTCAAACGTC 1479
Query 1520 CACCTCAAAACTCTGCAGAAAAGTGGGACTCGTTGTTGTATAGACATGGTATAGAAGATG 1579
|||||| || || || |||||||||||| | ||||| ||| ||||||||||||| ||||
Sbjct 1480 CACCTCGTAATTCAGCTGAAAAGTGGGACGCATTGTTATATCGACATGGTATAGAGGATG 1539
Query 1580 ACTCTCAGGTGTATGCTATG-TTGGATAAGACTATATGTGCAATGTCCAGTGTATTCATC 1638
||||||||||| |||| ||| ||| |||| || ||||| || |||||||| || |||||
Sbjct 1540 ACTCTCAGGTGGATGCAATGCTTG-ATAAAACAATATGCGCCATGTCCAGCGTCTTCATT 1598
Query 1639 GGAGCATCGGGTTCTACTTTTACAGAGGATATCTTGCGGCTAAGAAAAGACTGGGGAACT 1698
||||| ||||| || ||||| ||||||||||||||| | ||||| ||||| ||||||||
Sbjct 1599 GGAGCCTCGGGATCAACTTTCACAGAGGATATCTTGAGACTAAGGAAAGATTGGGGAACA 1658
Query 1699 TCATCTATGTGCGATGAGTATCTCTGTCGAGGCGAAGAACCAAACTTCATAGCTGAAAAT 1758
|| |||| ||||||||||| ||||||||||| ||||| |||||||||||||| ||| ||
Sbjct 1659 TCCTCTACATGCGATGAGTACCTCTGTCGAGGAGAAGAGCCAAACTTCATAGCAGAAGAT 1718
Query 1759 GAATAA 1764
||||||
Sbjct 1719 GAATAA 1724
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73590353340
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5