BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G17277.1
Length=498
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489084 jgi|Araly1|489084|fgenesh2_kg.6__2218__AT1G17277.1 804 0.0
Ahg495277 jgi|Araly1|495277|fgenesh2_kg.8__1093__AT1G17277.1 593 3e-169
> Ahg489084 jgi|Araly1|489084|fgenesh2_kg.6__2218__AT1G17277.1
Length=498
Score = 804 bits (435), Expect = 0.0
Identities = 478/499 (96%), Gaps = 2/499 (0%)
Strand=Plus/Plus
Query 1 ATGAGCTGCAACTCAAGGAATTCGAGTGGTGAAAGTGGAGGCTGCAATTCAGGAATGATT 60
||||||||||| ||||||||||||| || |||||||||||| ||||||||||| ||||||
Sbjct 1 ATGAGCTGCAATTCAAGGAATTCGAATGTTGAAAGTGGAGGTTGCAATTCAGGGATGATT 60
Query 61 TCGAATGCTGAAGCTGGAGGTTTCAAGAGCCGTGGGTTTCCTGTTAAGTGTAAATGTGGG 120
||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 61 TCGAATGTTGAAGCTGGAGGTTTCAATAGCCGTGGGTTTCCTGTTAAGTGTAAATGTGGG 120
Query 121 CTCGACGTCGTCATGTTTACATCGAGCACGGCTAAGAACCCTGGAAGGCCTTTCTTTCGG 180
|| |||||||||||||| |||||||||||| | |||||||||||||||||||||||||||
Sbjct 121 CTAGACGTCGTCATGTTAACATCGAGCACGCCGAAGAACCCTGGAAGGCCTTTCTTTCGG 180
Query 181 TGCAAAAGCTGTGAAGATGATCATTTGTTCAAATGGGTGGAGGATTGTATGTATGAAGAG 240
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TGCAAAAGCTGTAAAGATGATCATTTGTTCAAATGGGTGGAGGATTGTATGTATGAAGAG 240
Query 241 GTTATAGATGCTCTACCCAAAATCTCCAGCATTGATAACGAGATAATCAATGCAAAAGCT 300
||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 241 GTTGTAGATGCTCTACCCAAAATCTCCAGCATTGATAACGAGATTATCAATGCAAAAGCT 300
Query 301 GAGGTTGCTGTTGAAATTGCAAACTTAAAGGAGCTAATGATAGAGTTGAAAGAAGATGGA 360
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GAGGTTGCAGTTGAAATTGCAAACTTAAAGGAGCTAATGATAGAGTTGAAAGAAGATGGA 360
Query 361 ATGTGGAGCAAAAGAGAAATTCAGAGATGGAAAAAGATGACGAAAGTGTGCTTGGTGTGC 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CTGTGGAGCAAAAGAGAAATTCAGAGATGGAAAAAGATGACGAAAGTGTGCTTGGTGTGC 420
Query 421 CTTTGTTTTAGTGTGATTGCAATTGTAATATCAATGTTCTATAAGa-aaaaaaCCCAGAA 479
|||||||||||||| ||||||||||| ||||||||||||||||||| |||||||| ||||
Sbjct 421 CTTTGTTTTAGTGTCATTGCAATTGTGATATCAATGTTCTATAAGACAAAAAACC-AGAA 479
Query 480 ATTTGTTCTTGGTTATTAG 498
||||||| |||||||||||
Sbjct 480 ATTTGTTTTTGGTTATTAG 498
> Ahg495277 jgi|Araly1|495277|fgenesh2_kg.8__1093__AT1G17277.1
Length=468
Score = 593 bits (321), Expect = 3e-169
Identities = 445/499 (89%), Gaps = 32/499 (6%)
Strand=Plus/Plus
Query 1 ATGAGCTGCAACTCAAGGAATTCGAGTGGTGAAAGTGGAGGCTGCAATTCAGGAATGATT 60
||||||||||| ||||||||||||| || |||||||||||||||||||||||| ||||||
Sbjct 1 ATGAGCTGCAATTCAAGGAATTCGAATGTTGAAAGTGGAGGCTGCAATTCAGGGATGATT 60
Query 61 TCGAATGCTGAAGCTGGAGGTTTCAAGAGCCGTGGGTTTCCTGTTAAGTGTAAATGTGGG 120
||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 61 TCGAATGTTGAAGCTGGAGGTTTCAATAGCCGTGGGTTTCCTGTTAAGTGTAAATGTGGG 120
Query 121 CTCGACGTCGTCATGTTTACATCGAGCACGGCTAAGAACCCTGGAAGGCCTTTCTTTCGG 180
|| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 121 CTAGACGTCGTCATGTTAACATCGAGCACGGCAAAGAACCCTGGAAGGCCTTTCTTTCGG 180
Query 181 TGCAAAAGCTGTGAAGATGATCATTTGTTCAAATGGGTGGAGGATTGTATGTATGAAGAG 240
|||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 181 TGCAAAAGCTGTAAAGATGATCATTTTTTCAAATGGGTGGAGGATTGTATGTATGAAGAG 240
Query 241 GTTATAGATGCTCTACCCAAAATCTCCAGCATTGATAACGAGATAATCAATGCAAAAGCT 300
||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 241 GTTGTAGATGCTCTACCCAAAATCTCCAGCATTGATAACGAGATTATCAATGCAAAAGCT 300
Query 301 GAGGTTGCTGTTGAAATTGCAAACTTAAAGGAGCTAATGATAGAGTTGAAAGAAGATGGA 360
|| | |||| | ||| ||| || || | | | || |||| || | |
Sbjct 301 GA----G--GTTGCAGTTG-AAA-TT------GC-----A-A-ACTT-AAAGGAGCT--A 336
Query 361 ATGTGGAGCAAAAGAGAAATTCAGAGATGGAAAAAGATGACGAAAGTGTGCTTGGTGTGC 420
| | || | | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 337 A--T-GA--TAGA-AGAAATTCAGAGATGGAAAAAGATGACGAAAGTGTGCTTGGTGTGC 390
Query 421 CTTTGTTTTAGTGTGATTGCAATTGTAATATCAATGTTCTATAAGa-aaaaaaCCCAGAA 479
|||||||||||||| ||||||||||| ||||||||||||||||||| |||||||| ||||
Sbjct 391 CTTTGTTTTAGTGTCATTGCAATTGTGATATCAATGTTCTATAAGACAAAAAACC-AGAA 449
Query 480 ATTTGTTCTTGGTTATTAG 498
|||||||||||||||||||
Sbjct 450 ATTTGTTCTTGGTTATTAG 468
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 18085749186
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5