BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G17280.1
Length=1135
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471931 jgi|Araly1|471931|fgenesh2_kg.1__1885__AT1G17280.1 1640 0.0
Ahg495109 jgi|Araly1|495109|fgenesh2_kg.8__925__AT5G50430.1 765 0.0
> Ahg471931 jgi|Araly1|471931|fgenesh2_kg.1__1885__AT1G17280.1
Length=1112
Score = 1640 bits (888), Expect = 0.0
Identities = 1048/1120 (94%), Gaps = 31/1120 (3%)
Strand=Plus/Plus
Query 23 TCTTTCTCTCTCT-ACCCGCGGAGAAGGAGAAAGTG--AGATTAACGAGAAACCCCAAGA 79
||| ||||||||| ||||| |||||||||||||||| |||||| |||||||||| |||
Sbjct 17 TCTCTCTCTCTCTAACCCGAGGAGAAGGAGAAAGTGTTTGATTAAGGAGAAACCCC-AGA 75
Query 80 GAGAAAATCTTCATCGACAAAA-TTCGATTCAGCTGCTGCAGCTATTCACTTCGTCCATA 138
|||||||||||| ||||||||| ||||||| ||| |||||||||| |||||| |||||||
Sbjct 76 GAGAAAATCTTCCTCGACAAAATTTCGATTGAGCAGCTGCAGCTACTCACTTAGTCCATA 135
Query 139 GCACGTAGATGGCAGAAAAGGCCTGTATAAAACGTCTTCAAAAGGAATATAGAGCACTTT 198
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 136 GCACTTAGATGGCAGAAAAGGCTTGTATAAAACGTCTTCAAAAGGAATATAGAGCACTTT 195
Query 199 GCAAGGAACCAGTCTCCCATGTTGTTGCTCGTCCTTCCCCAAATGACATTCTCGAGTGGC 258
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 196 GCAAGGAACCTGTCTCCCATGTTGTTGCTCGTCCTTCCCCAAATGACATTCTCGAGTGGC 255
Query 259 ATTATGTGCTGGAAGGCAGTGAGGGAACACCTTTTGCAGGTGGATTTTACTATGGAAAGA 318
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 256 ATTATGTGCTGGAAGGTAGTGAGGGAACACCTTTTGCAGGTGGATTTTACTATGGAAAGA 315
Query 319 TCAAGTTTCCTCCCGAGTATCCTTACAAGCCACCAGGGATTACAATGACTACACCAAATG 378
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 316 TCAAGTTTCCTCCTGAGTATCCTTACAAGCCACCTGGGATTACAATGACTACACCAAATG 375
Query 379 GTCGATTCATGACACAGAAGAAAATTTGTTTATCTATGAGTGATTTTCATCCAGAAAGCT 438
|||||||||||||||| |||||||| ||||| ||||||||||||||||| ||||||||||
Sbjct 376 GTCGATTCATGACACAAAAGAAAATCTGTTTGTCTATGAGTGATTTTCACCCAGAAAGCT 435
Query 439 GGAATCCGATGTGGTCTGTATCAAGCATACTTACAGGACTTCTCTCATTTATGATGGATA 498
|||| || ||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 436 GGAACCCTATGTGGTCTGTGTCAAGCATACTTACAGGCCTTCTCTCATTTATGATGGATA 495
Query 499 CCAGTCCGACAACTGGAAGTGTTAACACTACTGTAATTGAGAAACAACGGTTGGCTAAGT 558
|||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 496 CCAGTCCGACAACTGGAAGTGTGAACACTACTGTAGCTGAGAAACAACGGTTGGCTAAGT 555
Query 559 CATCTCTCGCTTTCAATTGTAAAACCCCAGCATTTCGAAAGCTATTTCCAGAGTATGTAG 618
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 556 CATCTCTAGCTTTCAATTGTAAAACCCCAGCATTTCGAAAGCTATTTCCAGAGTATGTAG 615
Query 619 AGAAGTACAACCAGCAGCAACTAGCTGAGCAAGCTACCACACAACTGACAACACCAGAGT 678
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 616 AGAAGTACAACCAGCAGCAACTAGCTGAGCAAGCTGCCACACAAGTGACAACACCAGAGT 675
Query 679 CTCCTCAAAAGAGCGATACCAAAGTCGAGTCAGAGAAAACCATCGATCCAACAAAGGGAG 738
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 676 CTCCTCAAAAGAGCGATACCAAAGTCGAGTCAGAGAAAACCATCGATCCAACTAAGG-AG 734
Query 739 -ATTCAGAAGGTGGCTTGAAGGAGAGGAAAAAGAACAATAAACAGGGATTGCCAGCGTGG 797
| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 735 GACTCAGAAGGTGGCTTGAAGGAGAGGAAAAAGAACAAGAAACAGGGATTGCCAGCGTGG 794
Query 798 ATAATACTGTTGCTAGTGTCGGTTTTCGGTGTGGTAATGGCGTTGCCTCTGCTTCAACTG 857
|||||||||||||||||||||||||||||||| ||||||||||||||| | |||||||||
Sbjct 795 ATAATACTGTTGCTAGTGTCGGTTTTCGGTGTTGTAATGGCGTTGCCTTTACTTCAACTG 854
Query 858 TGATTTCTATGCAACAAACCTCGACCTGGTTTTCGTATAATCTCTCCTTGTGTCTCTCTC 917
| |||||||||||||| | | | ||||||||||||| ||||||||
Sbjct 855 TAATTTCTATGCAACAG---T--A------------A-AATCTCTCCTTGTCTCTCTCTC 896
Query 918 TCTTCAGCATCAAGAGTAGTCTCCTTTTGTCTAGTGCTCTTCGTCTGAATTTACTCATTT 977
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 TCTTCAGCATCAAGAGTAGTCTCCTTTTGTCTAGTGCTCTTCGTCTGAATTTACTCATTT 956
Query 978 -AGCACCTCATGGTTTGTGCTTGTAAAAGCAGATAACATAAGTTTGGTTTCACAATTACA 1036
||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 957 TAGCCCCTCATGGTTTG--CTTGTAAAAGCAGATAACATAAGTTTGGTTTCACAATTACA 1014
Query 1037 TACATATTGTAGCTTCGTTGGAACTACTTTGTATAGTATATATGAATTGAGGATAATGGT 1096
||||||||||||||| ||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 1015 TACATATTGTAGCTTTGTTGGAACTACTTTGTATAGTATAT--GAATTGAGGGTAATGGT 1072
Query 1097 TTGGATTTGA-AAAATAGAACCGTATGGTTTTCAAATTGT 1135
|||||||||| |||||||||||||||||||||||||||||
Sbjct 1073 TTGGATTTGATAAAATAGAACCGTATGGTTTTCAAATTGT 1112
> Ahg495109 jgi|Araly1|495109|fgenesh2_kg.8__925__AT5G50430.1
Length=1169
Score = 765 bits (414), Expect = 0.0
Identities = 637/743 (86%), Gaps = 21/743 (3%)
Strand=Plus/Plus
Query 144 TAGATGGCAGAAAAGGCCTGTATAAAACGTCTTCAAAAGGAATATAGAGCACTTTGCAAG 203
|||||||||||||| || |||||||| ||||||||||| ||||| |||||||||||||||
Sbjct 253 TAGATGGCAGAAAAAGCTTGTATAAAGCGTCTTCAAAAAGAATACAGAGCACTTTGCAAG 312
Query 204 GAACCAGTCTCCCATGTTGTTGCTCGTCCTTCCCCAAATGACATTCTCGAGTGGCATTAT 263
||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 313 GAACCAGTCTCGCATGTTGTTGCTCGGCCTTCCCCAAATGACATTCTTGAGTGGCATTAT 372
Query 264 GTGCTGGAAGGCAGTGAGGGAACACCTTTTGCAGGTGGATTTTACTATGGAAAGATCAAG 323
||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 373 GTGTTGGAAGGCAGTGAGGGAACACCTTTTGCAGGTGGATTTTACTATGGGAAGATCAAG 432
Query 324 TTTCCTCCCGAGTATCCTTACAAGCCACCAGGGATTACAATGACTACACCAAATGGTCGA 383
|| ||||| || ||||||||||||||||| || || |||||||| |||||||||||||||
Sbjct 433 TTCCCTCCAGAATATCCTTACAAGCCACCTGGAATAACAATGACCACACCAAATGGTCGA 492
Query 384 TTCATGACACAGAAGAAAATTTGTTTATCTATGAGTGATTTTCATCCAGAAAGCTGGAAT 443
|| ||||||| |||||||| ||||| ||||||||||| |||||||||||||||||||||
Sbjct 493 TTTGTGACACAAAAGAAAATCTGTTTGTCTATGAGTGACTTTCATCCAGAAAGCTGGAAT 552
Query 444 CCGATGTGGTCTGTATCAAGCATACTTACAGGACTTCTCTCATTTATGATGGATACCAGT 503
|| |||||||| || |||||||||||||||||||||||||||||||||||||| | |||
Sbjct 553 CCAATGTGGTCAGTGTCAAGCATACTTACAGGACTTCTCTCATTTATGATGGACAACAGC 612
Query 504 CCGACAACTGGAAGTGTTAACACTACTGTAATTGAGAAACAACGGTTGGCTAAGTCATCT 563
|| ||||| |||||||| ||||||| |||| || ||||||| |||||| |||||||||
Sbjct 613 CCCACAACGGGAAGTGTAAACACTAGTGTAGCCGATAAACAACAGTTGGCGAAGTCATCT 672
Query 564 CTCGCTTTCAATTGTAAAACCCCAGCATTTCG-AAAGCTATTTCCAGAGTATGTAGAGAA 622
|| ||||| |||||||||| || |||| || ||| |||||||| ||||||||||||||
Sbjct 673 CTTGCTTTTAATTGTAAAAATGCAACATTCCGGAAA-CTATTTCCCGAGTATGTAGAGAA 731
Query 623 GTACAACCAGCAGCAACTAGCTGA-GC--AAGCTA-CCACACAACTGACAACACCAGAG- 677
||||| |||||| ||| ||||||| | |||| | |||| |||| ||||||||| |||
Sbjct 732 GTACAGCCAGCAACAAGTAGCTGAAGAGGAAGC-AGCCACTCAACAGACAACACCTGAGG 790
Query 678 -T-CTCCTCAAAAGAGCGA-TACCAAAGTCGAGTCAGAGAAAACCATCGATCC-AACAAA 733
| ||||||| || | | | | |||||||| |||||||||| ||| | || || |||
Sbjct 791 ATTCTCCTCAGGAG-GAAAATGCGAAAGTCGAATCAGAGAAAAGCATTGGTCTTAA-AAA 848
Query 734 GGG-AG-ATTCA-GAAGGTGGC-TTGAAGGAGAGGAAAAAGAACAATAAACAGGGATTGC 789
|| || ||||| |||| ||| ||||| ||||||| ||||||||| ||| | | ||| |
Sbjct 849 GGACAGTATTCAAGAAG-TGGGATTGAAAGAGAGGAGAAAGAACAAGAAAGAAGCATTAC 907
Query 790 CAGCGT-GGATAATACTGTTGCTAGTGTCGGTTTTCGGTGTGGTAATGGCGTTGCCTCTG 848
| | || ||||| || || ||||||| ||| || ||||||| ||||||||||||||| ||
Sbjct 908 CGG-GTTGGATAGTATTGCTGCTAGTATCGATTGTCGGTGTTGTAATGGCGTTGCCTTTG 966
Query 849 CTTCAACTGTGATTTCTATGCAA 871
||||||||||||||| ||||||
Sbjct 967 CTTCAACTGTGATTTAGATGCAA 989
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42316437870
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5