BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G17285.1
Length=537
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471933 jgi|Araly1|471933|fgenesh2_kg.1__1887__AT1G17285.1 614 2e-175
Ahg920647 jgi|Araly1|920647|scaffold_101928.1 287 6e-77
> Ahg471933 jgi|Araly1|471933|fgenesh2_kg.1__1887__AT1G17285.1
Length=455
Score = 614 bits (332), Expect = 2e-175
Identities = 430/473 (91%), Gaps = 23/473 (5%)
Strand=Plus/Plus
Query 70 AAGTCAAGAGGTTTCAAGAGTCCTAAAGGAAATTTCAAGAAGAGAACTCAGAATGAAGAG 129
|||| |||||||| |||||||||||| || |||| |||||||| |||||| |||||| ||
Sbjct 1 AAGTTAAGAGGTTGCAAGAGTCCTAACGG-AATTACAAGAAGAAAACTCACAATGAAAAG 59
Query 130 ATGCTGTTCAGTGGCTCTGGTTCTGTTACTTGTAGCTTTCTTTAGCAGCAAGTATAGTGT 189
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 ATACTGTTCAGTGGCTCTGGTTCTGTTACTTGTAGCTTTCTTTAGCAGCAAGTATAGTGT 119
Query 190 AGAAGGACGTTCTCTGTTAACGATGACACATTCGAGTCAAGCTGTGAGAGATTTGCCTGT 249
|||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 120 AGAAGGCCGTTCTCTGTTAACGATGACACATTCGAGTCAAGCTCAGAGAGATTTGCATGT 179
Query 250 AAGCAAGGAGATGAAGAAAGAGCCACTTAAGGGAGAAAATGATAGCTTCAGAAGAATCCC 309
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 180 AAGCAAGGAGATGAAGAAAGAGCCACTTAAGGGAGAAAAAGATAGCTTCAGAAGAATCCC 239
Query 310 AAGGAGTGGCTCAAACCCTATACAGAACAAGTGTAATCCACCGGTAGATGTTAAAGCAAG 369
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 240 AAGGAGTGGCTCAAACCCTATACAGAACAAGTGTAATCCACCGGTAGATGTTAAAGGAAG 299
Query 370 TAGGAAACAACAGCAGATCACAACATCAAGAAAACCTTAAAATTCCAGTTCtttttttGT 429
|||||| | |||||||||||| |||||||||||||||||| || || | ||
Sbjct 300 TAGGAA-C--CAGCAGATCACAGCATCAAGAAAACCTTAAA-TT----TT-T------GT 344
Query 430 CCTTATTTAGATCCTCTACTTTCGtt-ttttttG--TAGAATAGGT-ACCTAGACATGTG 485
|||| || |||||||||||||| || |||||| |||||||||| | |||||||||||
Sbjct 345 CCTTCTT-AGATCCTCTACTTTTTTTCTTTTTTTCATAGAATAGGTTATCTAGACATGTG 403
Query 486 TGCTT-TTAATGCTGTAATCTACTTGAAATATATGAACTCATCTTTTAATCTT 537
|| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 404 TG-TTCTTAATGCTGTAATCTACTTGAAATATATGAACTCATCTTTTAATCTT 455
> Ahg920647 jgi|Araly1|920647|scaffold_101928.1
Length=360
Score = 287 bits (155), Expect = 6e-77
Identities = 206/229 (90%), Gaps = 9/229 (4%)
Strand=Plus/Plus
Query 102 TTT-CAAGAAGAGAACTCAGAATGAAGAGATGCTGTTCAGTGGCTCTGGTTCTGTTACTT 160
||| ||||||||||||||| ||||||||||| |||||||| |||| ||||||||||||||
Sbjct 1 TTTACAAGAAGAGAACTCACAATGAAGAGATACTGTTCAGCGGCTTTGGTTCTGTTACTT 60
Query 161 GTAGCTTTCTTTAGCAGCAAGTATAGTGTAGAAGGACGTTCTCTGTTAACGATGACACAT 220
||||||||||||||||||||| |||||||||| || |||||||||||||| ||| ||
Sbjct 61 GTAGCTTTCTTTAGCAGCAAGCATAGTGTAGAGGGCCGTTCTCTGTTAAC----ACA-AT 115
Query 221 TCGAGTCAAGCTGTGAGAGATTTGCCTGTAAGCAAGGAGATGAAGAAAGAGCCACTTA-A 279
|| ||||||| ||||||||||||| | |||||||||||||||||||||||||||||| |
Sbjct 116 CCG-GTCAAGCCGTGAGAGATTTGCATATAAGCAAGGAGATGAAGAAAGAGCCACTTAGA 174
Query 280 GGGAGAAAATGATAGCTTCAGAAGAATCCCAAGGAGTGGCTCAAACCCT 328
|| |||||| ||||||||||||||||||||||| | |||||||||||||
Sbjct 175 GG-AGAAAAAGATAGCTTCAGAAGAATCCCAAGTACTGGCTCAAACCCT 222
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19573817157
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5