BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G17290.1
Length=2080
Score E
Sequences producing significant alignments: (Bits) Value
Ahg920646 jgi|Araly1|920646|scaffold_101927.1 2798 0.0
Ahg476362 jgi|Araly1|476362|fgenesh2_kg.2__1492__AT1G72330.1 1666 0.0
Ahg925252 jgi|Araly1|925252|scaffold_200813.1 237 3e-61
> Ahg920646 jgi|Araly1|920646|scaffold_101927.1
Length=1671
Score = 2798 bits (1515), Expect = 0.0
Identities = 1616/1665 (97%), Gaps = 6/1665 (0%)
Strand=Plus/Plus
Query 129 CACACAATCACAAATGCGGAGATTCGTGATTGGCCAAGCTAAAAATCTCATAGATCAGAG 188
||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 9 CACAC-ATCACAAATGCGGAGATTCGTGATTGGTCAAGCTAAAAATCTCATAGATCAGAG 67
Query 189 TCGTCGTCGTCAACTTCA-TCATCACAAAAATCTCAGCTTTGTCTCTCTTATTCCTCCTT 247
|||||||||||||| | | |||||||||||||||||||||| |||||||| |||||||||
Sbjct 68 TCGTCGTCGTCAACAT-ATTCATCACAAAAATCTCAGCTTTCTCTCTCTTCTTCCTCCTT 126
Query 248 TTTCTGCTCCTTCCGATTCTTCATCGCGCCActtgtcttcttcttcttcttccgatatgt 307
||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||
Sbjct 127 TTTCTGCTCCTTCCGATTCTTCATCGCGCCACTTG---TCTTCTTCTTCTTCGGAGATGT 183
Query 308 ctgcttctgattcctcttcctctcttccCGTTACTCTTGACACCATCAACCCCAAGGTTA 367
||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 184 CTGCTTCTGATTCCTCTTCCTCTCTTCCCGTTACTCTTGACTCCATCAATCCCAAGGTTA 243
Query 368 TCAAATGTGAGTATGCTGTCCGTGGAGAAATTGTCAACATTGCTCAGAAATTGCAAGAAG 427
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 244 TCAAATGTGAGTATGCTGTCCGTGGAGAAATTGTCAACATTGCTCAGAGGTTGCAAGAAG 303
Query 428 ATTTGAAGACTAACAAGGACGCTTATCCCTTTGATGAGATTATCTACTGTAATATCGGGA 487
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 304 ATTTGAAGACTAACAAGGATGCTTATCCCTTTGATGAGATAATCTACTGTAATATCGGGA 363
Query 488 ATCCTCAATCTCTTGGTCAACAGCCTATAACATTCTTCAGAGAGGTTCTTGCTTTATGTT 547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 364 ATCCTCAATCTCTTGGTCAACAGCCTATAACATTCTTCAGAGAGGTTCTTGCTTTATGTT 423
Query 548 CCTACACAGCCCTGTTGGATGAGAGTGCAACACACGGTTTGTTCAGTTCTGATTCGATTG 607
|| |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 424 CCCACACAGCCCTGTTGGACGAGAGTGCAACACACGGTTTGTTCAGTTCTGATTCAATTG 483
Query 608 AGCGTGCTTGGAAGATTCTGGACCAAATTCCCGGGAGAGCGACTGGTGCTTACAGCCACA 667
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 484 AGCGTGCTTGGAAGATTCTGGACCAAATTCCCGGGAAAGCGACTGGTGCTTACAGCCACA 543
Query 668 GCCAGGGTATCAAGGGGTTACGTGATGCAATTGCTGATGGAATCGAAGCCCGTGATGGTT 727
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 544 GCCAGGGTATCAAGGGGTTACGTGATGCAATTGCTGCTGGAATCGAAGCCCGTGATGGTT 603
Query 728 TCCCTGCTGATCCTAATGATATATTCATGACAGATGGTGCAAGTCCAGGGGTTCATATGA 787
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 604 TCCCTGCTGATCCTAATGATATATTCATGACAGATGGTGCAAGCCCAGGGGTTCATATGA 663
Query 788 TGATGCAACTTCTCATAACTTCAGAGAAAGATGGAATCCTTTGTCCTATTCCTCAGTATC 847
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 664 TGATGCAACTTCTCATAACTTCAGAGAAAGATGGAATCCTTTGCCCTATTCCTCAGTACC 723
Query 848 CATTGTACTCAGCTTCAATTGCCCTTCACGGTGGAACTTTGGTTCCATACTACCTTGATG 907
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 724 CATTGTACTCAGCTTCAATTGCCCTTCACGGTGGAACTTTGGTTCCATACTACCTTGATG 783
Query 908 AAGCATCAGGATGGGGTCTTGAAATATCTGAGCTGAAGAAACAACTTGAAGATGCTAGGT 967
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 784 AAGCATCAGGATGGGGTCTTGAAATATCTGAGCTAAAGAAGCAACTTGAAGATGCTAGGT 843
Query 968 CAAAGGGCATCACTGTGAGAGCTTTGGCTGTCATTAACCCTGGAAACCCGACAGGGCAGG 1027
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 844 CAAAGGGGATCACTGTGAGAGCTTTGGCTGTCATTAACCCTGGAAACCCGACAGGGCAGG 903
Query 1028 TTCTTTCGGAAGAAAACCAGCGTGACGTTGTTAAGTTCTGCAAGCAAGAGGGTTTAGTTC 1087
||||| |||||||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 904 TTCTTGCGGAAGAAAACCAGCGTGACATTGTTAATTTCTGCAAGCAAGAGGGTTTAGTTC 963
Query 1088 TTTTAGCAGACGAGGTTTATCAAGAGAATGTCTATGTCCCTGACAAAAAGTTCCATTCCT 1147
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 964 TTTTAGCAGACGAGGTTTATCAAGAAAATGTGTATGTCCCTGACAAAAAGTTCCATTCCT 1023
Query 1148 TCAAGAAAGTAGCCCGCTCTATGGGCTACGGTGAGAAGGATCTTGCCTTAGTCTCTTTCC 1207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1024 TCAAGAAAGTAGCCCGCTCTATGGGCTACGGTGAGAAGGATCTTGCCTTAGTCTCTTTCC 1083
Query 1208 AATCTGTCTCCAAAGGGTACTATGGAGAGTGTGGGAAAAGAGGTGGTTACATGGAGGTTA 1267
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1084 AATCTGTCTCCAAAGGTTACTATGGAGAGTGTGGGAAAAGAGGTGGTTACATGGAGGTTA 1143
Query 1268 CTGGATTCACTTCTGATGTAAGAGAGCAGATATACAAAATGGCTTCTGTGAATCTTTGTT 1327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1144 CTGGATTCACTTCTGATGTAAGAGAGCAGATATACAAAATGGCTTCTGTGAATCTTTGTT 1203
Query 1328 CCAACATCTCTGGTCAAATTCTTGCTAGCCTCATCATGAGCCCACCCAAGCCTGGTGACG 1387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1204 CCAACATCTCTGGTCAAATTCTTGCTAGCCTCATCATGAGCCCACCCAAGCCTGGTGACG 1263
Query 1388 ACTCCTATGAATCATACATAGCAGAGAAGGATGGAATTCTCTCATCTTTGGCAAGACGTG 1447
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1264 ACTCCTACGAATCATACATAGCAGAGAAGGATGGAATTCTCTCATCTTTAGCAAGACGTG 1323
Query 1448 CAAAGACTCTTGAAGAGGCTCTGAACAAGCTAGAGGGAGTTACATGCAATAGAGCAGAAG 1507
| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||
Sbjct 1324 CGAAGACTCTTGAAGAGGCGCTGAACAAGCTAGAGGGTGTTACATGCAATAGAGCGGAAG 1383
Query 1508 GAGCTATGTATCTATTCCCTTGCCTTCACCTTCCACAAAAGGCAATTGCAGCTGCTGAGG 1567
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||
Sbjct 1384 GAGCTATGTATCTATTCCCCTGCCTTCACCTTCCACAAAAGGCGATTGCAGCTGCAGAGG 1443
Query 1568 CGGAAAAGACAGCACCAGACAATTTCTACTGCAAACGCCTTCTAAAAGCTACTGGAATAG 1627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1444 CGGAAAAGACAGCACCAGACAATTTCTACTGCAAACGCCTTCTAAAAGCTACTGGAATAG 1503
Query 1628 TCGTTGTCCCTGGTTCTGGCTTTAGACAGGTACCTGGAACATGGCATTTCAGGTGCACTA 1687
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1504 TCGTAGTCCCTGGTTCTGGCTTTAGACAGGTACCTGGAACATGGCATTTCAGGTGCACTA 1563
Query 1688 TACTTCCCCAAGAGGATAAGATTCCAGCGATTGTTGATCGTCTAACTGCGTTCCACCAGA 1747
||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct 1564 TACTTCCCCAAGAGGATAAGATTCCAGCGATTGTTGATCGTCTAACTGCATTCCACGAGA 1623
Query 1748 GCTTCATGGACGAGTTCCGCGACTAAGCATTCTGTTTTCAAGATC 1792
|||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 1624 GCTTCATGGACGAGTTCCGCGACTAAACATTGTGTTTTCAAGATC 1668
> Ahg476362 jgi|Araly1|476362|fgenesh2_kg.2__1492__AT1G72330.1
Length=1947
Score = 1666 bits (902), Expect = 0.0
Identities = 1307/1503 (87%), Gaps = 25/1503 (2%)
Strand=Plus/Plus
Query 283 tcttcttcttcttcttccgatatgtctgcttctgattcctcttcctctcttccCGTTACT 342
||||| |||||| |||| || |||||||||||||||||| |||| |||||||||||||||
Sbjct 244 TCTTC-TCTTCTACTTCGGAGATGTCTGCTTCTGATTCCACTTCTTCTCTTCCCGTTACT 302
Query 343 CTTGACACCATCAACCCCAAGGTTATCAAATGTGAGTATGCTGTCCGTGGAGAAATTGTC 402
|||||| ||||||| ||||||||| | ||||||||||||||||| |||||| ||||||||
Sbjct 303 CTTGACTCCATCAATCCCAAGGTTCTGAAATGTGAGTATGCTGTTCGTGGAAAAATTGTC 362
Query 403 AACATTGCTCAGAAATTGCAAGAAGATTTGAAGACTAACAAGGACGCTTATCCCTTTGAT 462
|||||||||||||| ||||||||||| |||||| |||| ||||| |||||||||||||||
Sbjct 363 AACATTGCTCAGAAGTTGCAAGAAGACTTGAAGTCTAATAAGGATGCTTATCCCTTTGAT 422
Query 463 GAGATTATCTACTGTAATATCGGGAATCCTCAATCTCTTGGTCAACAGCCTATAACATTC 522
||||| ||||| || || || ||||||||||||||||||||||||| |||||||| |||
Sbjct 423 GAGATAATCTATTGCAACATTGGGAATCCTCAATCTCTTGGTCAACTGCCTATAAGGTTC 482
Query 523 TTCAGAGAGGTTCTTGCTTTATGT-TCCTACAC-AGCCCTGTTGGATGAGAGTGCAACAC 580
||| |||||||||| || || ||| || || | || ||| ||||||||| || |||||
Sbjct 483 TTCCGAGAGGTTCTCGCATTGTGTGACC-ACGCAAG-CCTTTTGGATGAGTCTGAAACAC 540
Query 581 ACGGTTTGTTCAGTTCTGATTCGATTGAGCGTGCTTGGAAGATTCTGGACCAAATTCCCG 640
| |||||||||||| | ||||| ||||| || || ||||||||| |||||||||||||||
Sbjct 541 ATGGTTTGTTCAGTACCGATTCAATTGACCGAGCATGGAAGATTTTGGACCAAATTCCCG 600
Query 641 GGAGAGCGACTGGTGCTTACAGCCACAGCCAGGGTATCAAGGGGTTACGTGATGCAATTG 700
| ||||| |||||||||||||| |||||||||||||||||||| |||||||||| |||||
Sbjct 601 GAAGAGCAACTGGTGCTTACAGTCACAGCCAGGGTATCAAGGGATTACGTGATGTAATTG 660
Query 701 CTGATGGAATCGAAGCCCGTGATGGTTTCCCTGCTGATCCTAATGATATATTCATGACAG 760
| | |||||||||||| |||||||| ||||| |||||||| |||||||| ||| |||| |
Sbjct 661 CAGCTGGAATCGAAGCACGTGATGGCTTCCCCGCTGATCCAAATGATATTTTCTTGACTG 720
Query 761 ATGGTGCAAGTCCAGGGGTTCATATGATGATGCAACTTCTCAT-AACTTCAGAGAAAGAT 819
||||||||||||||| ||||||||||||||||||||||||| | | | ||||||||||||
Sbjct 721 ATGGTGCAAGTCCAGCGGTTCATATGATGATGCAACTTCTCTTGAGC-TCAGAGAAAGAT 779
Query 820 GGAATCCTTTGTCCTATTCCTCAGTATCCATTGTACTCAGCTTCAATTGCCCTTCACGGT 879
|| || ||||| || ||||||||||||||||||||||| ||||||||||| ||||| |||
Sbjct 780 GGTATTCTTTGCCCAATTCCTCAGTATCCATTGTACTCTGCTTCAATTGCTCTTCATGGT 839
Query 880 GGAACTTTGGTTCCATACTACCTTGATGAAGCATCAGGATGGGGTCTTGAAATATCTGAG 939
||| |||||||||| ||||| |||||||||||| | |||||||| || |||||||||||
Sbjct 840 GGATCTTTGGTTCCGTACTATCTTGATGAAGCAACCGGATGGGGACTGGAAATATCTGAC 899
Query 940 CTGAAGAAACAACTTGAAGATGCTAGGTCAAAGGGCATCACTGTGAGAGCTTTGGCTGTC 999
|| ||||| ||||| || || |||||||| ||||||||| |||| || || |||| ||||
Sbjct 900 CTTAAGAAGCAACTGGAGGAAGCTAGGTCGAAGGGCATCGCTGTAAGGGCCTTGGTTGTC 959
Query 1000 ATTAACCCTGGAAACCCGACAGGGCAGGTTCTTTCGGAAGAAAACCAGCGTGACGTTGTT 1059
|| ||||| || ||||| || |||||||||||| | ||||| |||||||||||| |||||
Sbjct 960 ATAAACCCCGGTAACCCAACTGGGCAGGTTCTTGCTGAAGACAACCAGCGTGACATTGTT 1019
Query 1060 AAGTTCTGCAAGCAAGAGGGTTTAGTTCTTTTAGCAGACGAGGTTTATCAAGAGAATGTC 1119
|| |||||||||||||||||||||||||||||||| |||||||| || ||||| |||||
Sbjct 1020 AATTTCTGCAAGCAAGAGGGTTTAGTTCTTTTAGCTGACGAGGTCTACCAAGAAAATGTT 1079
Query 1120 TATGTCCCTGACAAAAAGTTCCATTCCTTCAAGAAAGTAGCCCGCTCTATGGGCTACGGT 1179
|| || |||||||||||||||||||| |||||||||||||| || ||| ||||||| ||
Sbjct 1080 TACGTACCTGACAAAAAGTTCCATTCTTTCAAGAAAGTAGCTCGGTCTTTGGGCTATGGC 1139
Query 1180 GAGAAGGATCT-TGCCTTAGTCTCTTTCCAATCTGTCTCCAAAGGGTACTATGGAGAGTG 1238
|| |||||| | | | |||||||| |||||||| || |||||||| ||||||||||| ||
Sbjct 1140 GAAAAGGATATCT-CGTTAGTCTCGTTCCAATCAGTTTCCAAAGGTTACTATGGAGAATG 1198
Query 1239 TGGGAAAAGAGGTGGTTACATGGAGGTTACTGGATTCACTTCTGATGTAAGAGAGCAGAT 1298
||| |||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 1199 TGGAAAAAGAGGAGGTTACATGGAGGTTACCGGATTCACTTCTGATGTAAGAGAACAGAT 1258
Query 1299 ATACAAAATGGCTTCTGTGAATCTTTGTTCCAACATCTCTGGTCAAATTCTTGCTAGCCT 1358
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1259 ATACAAAATGGCTTCTGTGAATCTTTGTTCTAACATCTCTGGTCAAATTCTTGCTAGCCT 1318
Query 1359 CATCATGAGCCCACCCAAGCCTGGTGACGACTCCTATGAATCATACATAGCAGAGAAG-G 1417
||||||||||||||||||||||||| ||||| ||||| |||||||| ||||| ||| |
Sbjct 1319 TGTCATGAGCCCACCCAAGCCTGGTGATGACTCATATGACTCATACATGGCAGA-AAGAG 1377
Query 1418 ATGGAATTCTCTCATCTTTGGC-AAGACGTGCAAAGACTCTTG-AAGA-GGCTCTGAACA 1474
|||||||||||||||| |||| || ||||||||||||| ||| |||| || ||| ||||
Sbjct 1378 ATGGAATTCTCTCATCCATGGCTAA-ACGTGCAAAGACT-TTGGAAGACGG-TCTCAACA 1434
Query 1475 AGCT-AGAGGGAGTTACATGCAATAGAGCAGAAGGAGCTATGTATCTATTCCCTTGCCTT 1533
| | ||| || |||||||| || ||||| |||||||| |||||||| ||||| | ||
Sbjct 1435 -GTTTAGAAGGTGTTACATGTAACAGAGCGGAAGGAGCGATGTATCTCTTCCCGCGAATT 1493
Query 1534 CA-CCTTCCACAAAAGGCAATTGCAGCTGCTGAGGCGGAAAAGACAGCACCAGACAATTT 1592
| |||||| |||||||| |||| |||||||||||| ||||| || || ||||| |||
Sbjct 1494 -AGCCTTCCTCAAAAGGCGATTGAAGCTGCTGAGGCCGAAAAAACTGCGCCAGATGCTTT 1552
Query 1593 CTACTGCAAACGCCTTCTAAAAGCTACTGGAATAGTCGTTGTCCCTGGTTCTGGCTTTAG 1652
|||||||||||||||||| || |||||||| |||| || |||||||||||||||||| |
Sbjct 1553 CTACTGCAAACGCCTTCTCAATGCTACTGGTGTAGTTGTAGTCCCTGGTTCTGGCTTTGG 1612
Query 1653 ACAGGTACCTGGAACATGGCA-TTTCAGGTGCACTATACTTCCCCAAGAGGATAAGATTC 1711
|||||| |||||||||||||| ||| || ||||| |||||||| ||||| || |||||||
Sbjct 1613 ACAGGTTCCTGGAACATGGCACTTT-AGATGCACAATACTTCCACAAGAAGACAAGATTC 1671
Query 1712 CAGCGATTGTTGA-TCGTCTAACTGCGTTCCACCAGAGCTTCATGGACGAGTTCCGCGAC 1770
| ||||| || || |||||| || | ||||||| ||||||||||||||||||||||||||
Sbjct 1672 CGGCGATAGT-GAATCGTCTCACAGAGTTCCACAAGAGCTTCATGGACGAGTTCCGCGAC 1730
Query 1771 TAA 1773
|||
Sbjct 1731 TAA 1733
> Ahg925252 jgi|Araly1|925252|scaffold_200813.1
Length=901
Score = 237 bits (128), Expect = 3e-61
Identities = 176/199 (88%), Gaps = 3/199 (2%)
Strand=Plus/Plus
Query 1256 ACATGG-AGGTTACTGGATTCACTTCTGATGTAAGAGAGCAGATATACAAAATGGCTTCT 1314
||| || ||||||| ||||||||| ||||||| ||||| || ||||||||||||||||||
Sbjct 675 ACAGGGCAGGTTACCGGATTCACTCCTGATGTCAGAGAACAAATATACAAAATGGCTTCT 734
Query 1315 GTGAATCTTTGTTCCAACATCTCTGGTCAAATTCTTGCTAGCCTCATCATGAGCCCACCC 1374
| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 735 ATTAATCTTTGTTCTAACATCTCTGGTCAAATTCTTGCTAGCCTTATCATGAGCCCACCC 794
Query 1375 AAGCCTGGTGACGACTCCTATGAATCATACATAGCAGAGAAG-GATGGAATTCTCTCATC 1433
||||||||||| ||||| ||||| |||||||| || || ||| ||||| |||||||| ||
Sbjct 795 AAGCCTGGTGATGACTCATATGACTCATACATGGCCGA-AAGAGATGGGATTCTCTCGTC 853
Query 1434 TTTGGCAAGACGTGCAAAG 1452
|||| ||||||||||||
Sbjct 854 AATGGCTAGACGTGCAAAG 872
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78237363230
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5