BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G17310.1
Length=654
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471935 jgi|Araly1|471935|fgenesh2_kg.1__1889__AT1G17310.1 1020 0.0
> Ahg471935 jgi|Araly1|471935|fgenesh2_kg.1__1889__AT1G17310.1
Length=639
Score = 1020 bits (552), Expect = 0.0
Identities = 613/642 (95%), Gaps = 6/642 (1%)
Strand=Plus/Plus
Query 16 ATGGAAGGAGAAAGAGAAACTTCATCGATGACTTGCTTGACGCCCAAGGATTCTGTTCAA 75
||||||| |||||||||||||||| |||||||||||||||||||||||||| | |||||
Sbjct 1 ATGGAAGAAGAAAGAGAAACTTCAACGATGACTTGCTTGACGCCCAAGGATCCACTTCAA 60
Query 76 AGCCCTAACATGTTGGTTAGACAACCAAAAAAGGAGACAACAACACAAACCCCTAAAACG 135
|||||||||||||||||||| ||||||||||| | || ||||||||||||||||||||||
Sbjct 61 AGCCCTAACATGTTGGTTAGTCAACCAAAAAA-G-GA-AACAACACAAACCCCTAAAACG 117
Query 136 ACACGAGGAAGACAGAAGATAGAGATCAAGAAAATCGAGGAAGAGACCAAGAGACAAGTA 195
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 118 ACACGAGGAAGACAGAAGATAGAGATCAAGATAATCGAGGAAGAGACCAAGAGACAAGTA 177
Query 196 ACGTTCTCGAAACGCCGTCGTGGGCTGTTCAAGAAATCCGCTGAATTGAGCGTTCTCACG 255
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 178 ACGTTCTCGAAACGCCGTCGTGGGCTGTTCAAGAAATCTGCTGAATTGAGCGTTCTCACG 237
Query 256 GGCGCAAAAATCGCCGTCATAACGTTCTCTAAATGCGATAGGATCTACAGATTTGGCCAT 315
||||| |||||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 238 GGCGCCAAAATCGCTGTCATAACGTTCTCTAAATGCGGTAGGATCTACAGATTTGGCCAT 297
Query 316 GTAGACGCATTGATAGACAAGTATCTTCGTAAGAGTCCGGTGAAGTTGGAGGGATATTCC 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 GTAGACGCATTGATAGACAAGTATCTTCGTAAGAGTCCGGTGAAGTTGGAGGGATATTCC 357
Query 376 GGTGATAACGCGGCGGATGAGGAAAGTAGGAGACCGTGGTGGGAGCGTCCGGTGGAGAGT 435
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 GGTGATAACGTGGCGGATGAGGAAAGTAGGAGACCGTGGTGGGAGCGTCCGGTGGAGAGT 417
Query 436 GTGCCAGAAGAGGAGCTTGAGGAGTACATGGCAGCATTGAGTATGTTGAGAGAAAATATA 495
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 418 GTGCCAGAAGAGGAGCTTGAAGAGTACATGGCAGCATTGAGTATGTTGAGAGAAAATATA 477
Query 496 GGGAAAAAGATTGTGGCGATGGGTAACGATCGGACGGTTGATATGGTTCCGGCATGGCCA 555
||||||||||| || |||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 478 GGGAAAAAGATCGTTGCGATGGGTAACGATCGGACTGTTGAGATGGTTCCGGCATGGCCA 537
Query 556 ATCAATGTGATGGGATGGAAACCAACGATGGATATGCAAAAATTGGAAAATCTGACGGAT 615
|||||||||||||| ||||||||| |||||||||||||||| |||||||||||||| |||
Sbjct 538 ATCAATGTGATGGGTTGGAAACCACCGATGGATATGCAAAACTTGGAAAATCTGACTGAT 597
Query 616 GGGGTTAATCGATGCCGTGTAGGT---CAAAACGGTGATTGA 654
||| ||| |||||||||||||||| |||||||||||||||
Sbjct 598 GGGATTACTCGATGCCGTGTAGGTGATCAAAACGGTGATTGA 639
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23979314793
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5