BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G17330.1
Length=962
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471936 jgi|Araly1|471936|fgenesh2_kg.1__1890__AT1G17330.1 1338 0.0
> Ahg471936 jgi|Araly1|471936|fgenesh2_kg.1__1890__AT1G17330.1
Length=837
Score = 1338 bits (724), Expect = 0.0
Identities = 809/848 (95%), Gaps = 14/848 (2%)
Strand=Plus/Plus
Query 1 AAAATCAAAATCTCTCCAATCTTCGAAACTGAGCAGTTgagagagagagagagaTAGATG 60
||||||||||||||||| | || ||||||||||||||| || | ||||||||| |||
Sbjct 1 AAAATCAAAATCTCTCCGACCTCCGAAACTGAGCAGTT----GA-A-AGAGAGATAAATG 54
Query 61 GCGGCGAAGACGATGAGGAAGGCGGAGGAGCTGGTGGAGAAGGCGATGAAAGGAAACGAT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 55 GCGGCGAAGACGATGAGGAAGGCGGAGGAGCTGGTGGAGAAGGCGATGAAAGGAAACGAT 114
Query 121 GCTTCTCATGACGCCTGGCACGTGTGGAGGGTCCGAGACCTTGCTCTCTCCATTGCTCGC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 115 GCTTCTCATGACGCCTGGCACGTGTGGAGGGTCCGAGACCTTGCTCTCTCCATTGCTCGC 174
Query 181 GAGGAAGGTCTCTCTTCCAATTCTGACTCCATGGAAATTGTGGAGCTTGCAGCTCTTCTC 240
|||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||
Sbjct 175 GAGGAAGGTCTCTCTTCCAACTCCGACTCCATGGAAATTGTGGAACTTGCAGCTCTTCTT 234
Query 241 CATGATATAGGTGATTACAAGTACATAAGAGACCCTTCGGAAGAGAAACTTGTTGAGAAT 300
|||||||||||||| ||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 235 CATGATATAGGTGACTACAAGTACATGAGAGACCCTTCGGAAGTGAAACTTGTTGAGAAT 294
Query 301 TTCCTAGATGATGAGGGTATAGAAGAGACCAAGAAGACGAAGATACTAACGATCATCAAT 360
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 295 TTCCTAGATGAGGAGGGTATAGAAGAGACCAAGAAGACGAAGATACTAACGATCATCAAT 354
Query 361 GGAATGGGTTTTAAAGACGAATTAGCAGGAGTAGCACTCTGTGAGTCTCTTCCAGAATTT 420
|||||||||||||||||||||||||||||| |||||||||| || |||||||||||||||
Sbjct 355 GGAATGGGTTTTAAAGACGAATTAGCAGGATTAGCACTCTGCGAATCTCTTCCAGAATTT 414
Query 421 GGGGTAGTTCAAGATGCTGATCGCCTTGATGCAATTGGCGCCATAGGAATTGCTCGTTGC 480
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 415 GGGGTAGTTCAAGATGCTGACCGCCTTGATGCAATTGGCGCCATAGGAATTGCTCGTTGC 474
Query 481 TTTACATTTGGTGGAAGCAGGAACAGAGTGCTTCATGATCCTGAGATCAAGCCCCGGACA 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 475 TTTACATTTGGTGGAAGCAGGAACAGAGTGCTTCATGATCCTGAGATCAAGCCCCGGACA 534
Query 541 GAGCTAACCAAAGAGCAGTACATTAAGAGAGAGGAGCAAACTACTATTAATCACTTTCAT 600
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 535 GAGCTAACCAAAGAGCAGTACATTAAGAGAGAGGAGCAAACTACAATTAATCACTTTCAT 594
Query 601 GAGAAACTCCTCAAGCTAAAGAAGCTGATGAAAACTGAGGCGGGTAAAAGGAGGGCAGAG 660
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 595 GAGAAACTCCTCAAGCTAAAGAAGCTGATGAAAACTGAGGCGGGTAGAAGGAGGGCAGAG 654
Query 661 AAAAGGCACAAGTTCATGGAAGAGTATCTTAAGGAGTTCTATGAAGAGTGGGATGGGTCA 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 AAAAGGCACAAGTTCATGGAAGAGTATCTTAAGGAGTTCTATGAAGAGTGGGATGGGTCA 714
Query 721 ACTTGAAAAGTTAAAAATGATAAATGAAGCAGAAAAGCAGAGGATT-TGTTCAACC-GGA 778
|||||||||| ||| |||||| |||||| ||||||||||||| || ||||||||| ||
Sbjct 715 ACTTGAAAAGATAAGAATGATGCATGAAGAAGAAAAGCAGAGG-TTGTGTTCAACCCGG- 772
Query 779 TTTTATTGAGTAAGCA-GTACCTACCAAACCAATATGTGGTTTAGGTTTTAAACAGAGTG 837
||| |||| |||| | |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 773 TTTAATTG--TAAG-ATGTACCTACCAAACCAATATGTGGTTTAGGTTTAAAACAGAGTG 829
Query 838 GCAActct 845
||||||||
Sbjct 830 GCAACTCT 837
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35721173229
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5