BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G17340.1
Length=2987
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471937 jgi|Araly1|471937|fgenesh2_kg.1__1891__AT1G17340.1 4259 0.0
> Ahg471937 jgi|Araly1|471937|fgenesh2_kg.1__1891__AT1G17340.1
Length=2820
Score = 4259 bits (2306), Expect = 0.0
Identities = 2606/2751 (95%), Gaps = 20/2751 (1%)
Strand=Plus/Plus
Query 65 AATCGTCTTTGTCGTCGTTACCTCCACCTCCAGAATTCCGAAA-TTTCTGGGAATATCGA 123
||||||||| ||||| |||| ||||| ||||||||||| |||| ||||||||||| || |
Sbjct 43 AATCGTCTTCGTCGTTGTTATCTCCATCTCCAGAATTCGGAAATTTTCTGGGAATTTCCA 102
Query 124 TTTTGATTTCTATTTCTTCACGCTCTAATTTACTC-GTCTGCTCGGCTGTTTCTCTGTAT 182
||||||| |||||||| ||||||||| |||| ||| ||||||||||||||||||||||||
Sbjct 103 TTTTGATCTCTATTTCCTCACGCTCTTATTTTCTCTGTCTGCTCGGCTGTTTCTCTGTAT 162
Query 183 TGGCTGATTC---G-AAATCCGGGGTCAAACCGGGTCTGAGCTAT--CTCCAGGTTCGGA 236
| ||||||| | |||| |||||||||||||| |||||||||| || |||||||| |
Sbjct 163 CGACTGATTCAGGGAAAAT-CGGGGTCAAACCGGCTCTGAGCTATCCCTTCAGGTTCGAA 221
Query 237 ATTTACAGA-TTTTATCTGGTCTGATGGGATCAGAGCCTCGGTTCGAGCCGAGGCCGGAA 295
||||||||| |||| |||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 222 ATTTACAGATTTTTTTCTGGTCTGATGGGATCAGAGCCTCGGTTCGAACCGAGGCCCGAA 281
Query 296 CTGATTGACTTGCCTGTTCTTCAGAAATTCAAGCTCTACGCTACTCCCTCGAATTTTTAT 355
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 282 CTGATTGACTTACCCGTTCTTCAGAAATTCAAGCTCTACGCTACTCCCTCGAATTTTTAT 341
Query 356 TTGATTGGAAGAGATGAGAACAAAAGCTTTAGGAGGATTCTTAAGATTGATAGAAGGGAC 415
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 342 TTGATTGGAAGAGATGAGAACAAAAGCTTTAGGCGGATTCTTAAGATTGATCGAAGGGAC 401
Query 416 CAAAATGAGTTAAATTTATTTGAAGATCCTACAAGGTATACAAAAGACGAAATGCGCGAA 475
||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 402 CAAAACGAGTTAAATTTGTTTGAAGATCCTACAAGGTATACAAAAGATGAAATGCGCGAA 461
Query 476 CTTAAAAGACGGATGATTGTAGGGAACGAGGAGTCTGGTGGCTTTAAAGCAATCACAACT 535
|| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 462 CTGAAAAGGCGGATGATTGTAGGGAACGAGGAGTCTGGTGGGTTTAAAGCAATCACAACT 521
Query 536 TGCTATGGAATCATTGGGTTTGTGAGATTCTTGGAGCCTTATTATATGCTGCTGATAACA 595
|||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 522 TGCTATGGAATCATTGGGTTTGTGAGATTCTTGGAGCCTTATTACATGCTGGTGATAACA 581
Query 596 AAACGAAAGAAAGTGGGTGAGATCTGTGGCCATACAGTTTATGGTATAGCAGAGAGTCAA 655
||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 582 AAAAGAAAGAAAGTGGGTGAGATCTGCGGCCATACAGTTTATGGTATAGCTGAGAGTCAA 641
Query 656 ATGATCGCGATTCCACATCCTTCAATTCA-ATCAAAAGTGGCTAAGTCTGAAGCCGAGCT 714
||||||||||||||||||||||| ||||| | |||||||||||||||||||||||||||
Sbjct 642 ATGATCGCGATTCCACATCCTTCCATTCAGA-CAAAAGTGGCTAAGTCTGAAGCCGAGCA 700
Query 715 GAGGTACAAGAAGCTCTTAAGCGTGGTGGATCTTAGCAAAAACTTCTACTTCAGCTACAC 774
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 701 AAGGTACAAGAAGCTCCTAAGCGTGGTGGATCTTAGCAAAAACTTCTACTTCAGCTACAC 760
Query 775 ATATCACCTCATGTATTCCCTTCAGAAGAACATAGGCAACACTGAGAGAGGAAACCCTCA 834
||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 761 ATATCACCTCATGTATTGCCTTCAGAAGAACATAGGCAACACTGAGAGAGGAAACGCTCA 820
Query 835 TGACAACACAATGTTCGTGTGGAACTCCTTCTTAACACGCGAGATCAGAAAGATCCTGCA 894
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 821 TGACAACACAATGTTTGTGTGGAACTCCTTCTTAACACGCGAGATCAGAAAGATCCTGCA 880
Query 895 GAATTCCATATGGACAGTTGCATTGATATACGGATTCTTTCAACAGACTAAATGTTCAGT 954
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 881 GAATTCCATATGGACAGTTGCATTGGTATACGGATTCTTTCAACAGACTAAATGTTCAGT 940
Query 955 ATCTGGTGAAAAATTTGTATTCACTATCATTGCTCGGCGTTCACGGCATTATGCTGGTAC 1014
||||||||| | ||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 941 ATCTGGTGAGGATTTTGTCTTCACTATCATTGCTCGGCGTTCACGGCATTATGCGGGTAC 1000
Query 1015 AAGATATTTAAGGCGTGGTGTAAATGATATAGGCAGGGTAGCCAATGATGTTGAGACAGA 1074
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 1001 AAGATATTTAAGGCGTGGTGTAAATGATATAGGCAGAGTAGCCAATGATGTTGAGACGGA 1060
Query 1075 GCAGATTGTTTCCAAAGTGGTTCCTGCGGGTCAGAAAATCCCGATAACATCAGTTGTGCA 1134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1061 GCAGATTGTTTCCAAAGTGGTTCCTGCGGGTCAGAAAATCCCGATAACATCAGTTGTGCA 1120
Query 1135 GGTTCGAGGCTCCATACCCCTATTTTGGTCACAGGAGGCATCTGTTTTCAACCCACAGCC 1194
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1121 GATTCGAGGCTCCATACCCCTATTTTGGTCACAGGAGGCATCTGTTTTCAACCCACAGCC 1180
Query 1195 CGAGATTATATTGAATAAGAAGGACGCAAATTATGAGGCTACCCAACACCACTTTCAGAA 1254
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 1181 CGAGATTATATTGAATAAGAAGGACGCAAATTATGTGGCTACCCAACACCACTTTGAGAA 1240
Query 1255 TCTGAGACAGAGGTATGGGAACCGGATAATAATTCTCAACCTCCTAAAGACTGTGACAGG 1314
|||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 1241 TCTGAGACAGAGGTATGGGAACCGGATAATAATTCTGAACCTCCTAAAGACTGAGACAGG 1300
Query 1315 TGAGAAAAAGCACCGAGAAACCATCTTAAGGGGAGAGTTTGCAAAGACAATCCGATTTAT 1374
|||||||||||| |||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 1301 TGAGAAAAAGCATCGAGAAACCATCTTAAGGTCAGAGTTTGCAAAGACAATCCGCTTTAT 1360
Query 1375 TAACAAAGGCATGGACAGGGAGCATCGTTTAAAGGCAATCCATTTTGATCTAAGCAAACA 1434
||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 1361 TAACAAAGGCATGGACAAGGAGAATCGTTTAAAGGCAATCCATTTTGATCTAAGCAAACA 1420
Query 1435 CTACAAAAAAGGAGCTGATGGTGCATTCAACCACTTGTGTATCTTTTCAAGGAAATCATT 1494
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 1421 CTACAAAAAAGGAGCTGATGGTGCATTCAACCACTTGTGTATCTTTGCAAGGAAAGCATT 1480
Query 1495 GGAACTAACTGACCTGTTTTACTGTAAAGCTCCTTCAGGTGTAGGAGCTGAAGAAGTAAT 1554
|||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 1481 GGAATTAACTGACCTGTTTTACTGTAAAGCTCCTTCAGGTGTAGGAGCTGAAGGAGTCAT 1540
Query 1555 TTATGATTCATTTTTCAATAACCCTATTCCAAGTCAAGATGAAGAGGCAAGTAGTCCAGA 1614
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1541 TTATGATTCATTTTTCAATAACCCTATTCCAAGTCAAGATGAAGAGGCGGGTAGTCCAGA 1600
Query 1615 AAAAGAAGATATGAAGGCGGATATATTTCTGCTTCAAAATGGGGTCTTGAGGACAAACTG 1674
||||||| | ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1601 TAAAGAAGCTTTGAAGGCGGATATATTTATGCTTCAAAATGGGGTCTTGAGGACAAACTG 1660
Query 1675 CATAGACTGTTTAGATCGCACTAATTTTGCGCAGTACGCCCACGGATTGGTTTCTCTCGG 1734
|||||||||| | |||||||| ||||||||||||||||||||||||||||| |||| ||
Sbjct 1661 CATAGACTGTCTGGATCGCACCAATTTTGCGCAGTACGCCCACGGATTGGTAGCTCTTGG 1720
Query 1735 GCATCAGCTGCGTACATTAGGTATCTCAGGACCTCCTGTCGTCGATCTTAATAATCCTCT 1794
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 1721 GCATCAGCTGCGTACATTGGGTATCTCAGGACCTCCTGTCGTTGATCTTAATAATCCTCT 1780
Query 1795 GGCAATAGAACTGATGGACGCTTACCAAAAGATGGGTAATACACTTGCGATGCAGTATGG 1854
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1781 GGCAATAGAACTGATGGACGCTTACCAAAAGATGGGTAATACACTTGCGCTGCAGTATGG 1840
Query 1855 TGGCTCGGAAGCACACAGCAAGATGTTCTGTGATCTGAGAGGTAATTGGAATATGGTGAT 1914
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 1841 TGGCTCGGAAGCACACAGCAAGATGTTCTGTGATCTGAGAGGTAACTGGAACATGGTGAT 1900
Query 1915 GAGGCAGCGTGATATCTTCACAGCTGTACGTCGTTACTACAGTAACGCGTATCAGGACAG 1974
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1901 GAGGCAGCGCGATATCTTCACAGCTGTACGTCGTTACTACAGTAACGCGTATCAAGACAG 1960
Query 1975 TGATAAGCAAAACGCCATCAATGTGTTCTTGGGTCATTTCCGGCCTCGACTGGGGAGGCC 2034
||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||| |||
Sbjct 1961 TGATAAGCAGAACGCCATCAATGTGTTCTTGGGGCATTTCCGGCCTCGATTGGGGAAGCC 2020
Query 2035 AGCGCTATGGGAGTTGGATTCTGACCAGCACAACATCGGAAGATCTGGTTCTAACTTAGA 2094
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2021 AGCACTATGGGAGTTGGATTCTGACCAGCACAACATCGGAAGATCTGGTTCTAACTTGGA 2080
Query 2095 TATCGAAAATATGAGGCCACTAATTAGAAGATCATTTTCCGATAACATTATTATGGACTG 2154
||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||
Sbjct 2081 TATTGAAAATATGAGGCCACTAATTAGAAGATCATTTTCCGATAATATTCTTATGGATTG 2140
Query 2155 TGATTTGAATCTGGAGGAGCTGGTACGCGAAAATTCTCAGCCTACATATGAAGGGTTAAA 2214
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 2141 TGATTTGAATCTGGAGGAGCTGGTACGCGAAAATTCTCAGCCTTCTTATGAAGGGTTAAA 2200
Query 2215 CGGGGGTGTCTCAGGAACCAATTTAGAATTTCCATTCTATGAAACTGAACCAGCTTCTCT 2274
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2201 CGGGGGTGTCTCAGGAACCAATTTAGAGTTTCCATTCTATGAAACTGAACCAGCTTCTCT 2260
Query 2275 AAGCTTCCTCTCGGTTATGCGCAATGAAGAGCTTATGAGAGAAACAGGGTCAGGGCAGAT 2334
|||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||
Sbjct 2261 AAGCTTCCTCTCGGTTATGCGCAATGAAGATCTTCTCAGAGAAACAGGGTCAGGGCAGAT 2320
Query 2335 GTTTCAAGGCAGTTCCTCTAATTCTGATTCCCACAGGCCCAATGATATACCTGGTTTTTC 2394
|||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 2321 GTTTGAAGGCAGTTCCTCTAATTATGATTCCCACAGGCCCAATGATATACCTGGTTTTGC 2380
Query 2395 ACACTCATACGTAACTAAGTTCACGCCGGCAGAAGACATATTTGAACGTGGCAGCTCAAA 2454
||||||||||| |||||| ||||| ||||||||||| |||||||||||||||||||||||
Sbjct 2381 ACACTCATACGCAACTAAATTCACTCCGGCAGAAGAAATATTTGAACGTGGCAGCTCAAA 2440
Query 2455 GTCTGTTTCGTCAGATAACTTGTTCACCGACCGGGATGAATCCGTCACTTCTTTAACTAA 2514
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2441 GTCTGTTTCGTCAGATAACTTGTTCACCGACCTGGATGAATCCGTCACTTCTTTAACTAA 2500
Query 2515 TACGAACTCCAGTTTTGAGTTTCCTATAATGGGTGGTTCCGATTTACTACCTGGTTTCTC 2574
|||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||
Sbjct 2501 TACGAACTCCAGTTTTGACTTTCCTATAATTGGTGGTTCCGATTTGCTACCTGGTTTCTC 2560
Query 2575 AAATGCTTTCGCTCGGTGGGTATTCTCCGCAAGAGCATGGTAAA-GAGGGTCTGGAGAAA 2633
|||| ||||||||| |||||||||||||||||||||||||||| |||||| |||||||
Sbjct 2561 AAATTATTTCGCTCGATGGGTATTCTCCGCAAGAGCATGGTAAAAGAGGGTTTGGAGAA- 2619
Query 2634 GAAAT-GAGCCTTGCACAGGAAGGTAACGGTGGTTACTTGGCAGGTACGGCAGGGTTGAA 2692
|||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2620 GAAAACGAGCCTTGCACGGGAAGGTAACGGTGGTTACTTGGCAGGTACGGCAGGGTTGAA 2679
Query 2693 CAGAGTCGTAATAACAGGAAAAGCACAGAATAACAGTTACATCTTGTAAATATCCGACTC 2752
||| ||||||||||||||||| | |||||||||||| ||||||||||||||||||||||
Sbjct 2680 CAGTGTCGTAATAACAGGAAA-GTACAGAATAACAGCCACATCTTGTAAATATCCGACTC 2738
Query 2753 ATACCTTTGTAAAGATCCACGTTTCTTGttttcttttttttttct-ttctt 2802
| ||||||||||| |||| |||||||||||| |||||| || || |||||
Sbjct 2739 A--CCTTTGTAAAGGTCCAGGTTTCTTGTTTT-TTTTTTGTTCCTGTTCTT 2786
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 112785215445
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5