BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G17345.1
Length=788
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471938 jgi|Araly1|471938|fgenesh2_kg.1__1892__AT1G17345.1 830 0.0
> Ahg471938 jgi|Araly1|471938|fgenesh2_kg.1__1892__AT1G17345.1
Length=711
Score = 830 bits (449), Expect = 0.0
Identities = 652/740 (88%), Gaps = 53/740 (7%)
Strand=Plus/Plus
Query 1 ACCAAGAAAGTTAGTTTCTCAATTCCTGATAAAACATACACAAAACAATAATCTTAATTT 60
||||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||
Sbjct 1 ACCAAGAAAGTTAGTTTCTCAATTCTTGATTAAACATACACAAAACAATAACCTTAATTT 60
Query 61 CAAGAAACTACTACTATTGCTAAAAATCAGAGACTTT--C--GCTAATGGCTATATTCGG 116
|||| || |||||||||| ||||||||||||| ||| | ||||||||||||||||||
Sbjct 61 CAAG-AA--ACTACTATTGTTAAAAATCAGAGATTTTCCCTAGCTAATGGCTATATTCGG 117
Query 117 TAAACTGACAAAGCTCAAGTCTGCCATAAAGAAATGGCCTTCCTTGACCAAGAACCACCA 176
||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 118 GAAACTGACAAAGCTCAAATCAGCCATAAAGAAATGGCCTTCCTTGACCAAGAACCACCA 177
Query 177 TTCAACCA---TGTGTACCGCCTCTACCGCCGTATCTGAGGTCTCAAAGTGC-GAGGATC 232
|||||||| ||| ||| |||||||| |||| ||| || |||||||||||| || ||||
Sbjct 178 TTCAACCACCGTGTCTACAGCCTCTACAGCCGCATCCGATGTCTCAAAGTGCGGA-GATC 236
Query 233 TCCATGTGGTTTACGTCGGAAAGTCACGAAGACCTTACATGCTTAGTTCCCACGTCATCG 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 TCCATGTGGTTTACGTCGGAAAGTCACGAAGACCTTACATGCTTAGTTCCCACGTCATCG 296
Query 293 CTCATCCGCTTTTCCAAGAACTACTTGACCGGTCGTCT-AGATTTATCGAAGAACGTCAC 351
|||||||||||||||||||||||||||| ||||| | | ||||| || |||| ||||
Sbjct 297 CTCATCCGCTTTTCCAAGAACTACTTGATCGGTCTT-TGAGATTCGCCGTTGAACATCAC 355
Query 352 GACCAAGAGACCGTCTTAGTAGCTTGCGAAGTCGTATTGTTCGAGCACTTGTTATGGATG 411
|| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 356 GATCAAGAGACAGTCTTAGTAGCTTGTGAAGTCGTATTGTTCGAGCACTTGTTATGGATG 415
Query 412 CTCAAAAACAGTTCCTCTGATCACGGCGATGA-G--GATGAT------CGCGAAAGAGGA 462
||||| |||||||||||||||||||||||||| | |||||| ||||||||||||
Sbjct 416 CTCAAGAACAGTTCCTCTGATCACGGCGATGACGAAGATGATGATGATCGCGAAAGAGGA 475
Query 463 TCCGTCGAGGAGTTGGCTGAGTTCTATACTTATTGACGGCGCGATACATATCC--ATA-T 519
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |
Sbjct 476 TCCGTCGAGGAGTTGGCTGAGTTCTATACTTATTGACGGCGCGATACATATTCTTATAAT 535
Query 520 ATA--CTTTTATTTCGTTAATTTTGGAATTTGATTCGACATGATCCAATAATGCGGTCAT 577
||| |||| |||||||||||||||||||| |||||||||||||| || | |||||||||
Sbjct 536 ATATACTTT-ATTTCGTTAATTTTGGAATT-GATTCGACATGATC-AA-A-TGCGGTCAT 590
Query 578 GCACAGACCATTTTCTTTGCTTTTGTTTTTCTCCCGAGCAAATTTTTAGAGTTAACTAGT 637
||||| ||||||| ||||||||||||| | | || |||||||| ||| ||
Sbjct 591 GCACAAACCATTTCCTTTGCTTTTGTT---C-----A--AA-TTTTTAGAATTA----GT 635
Query 638 AATCTTTAACTAATATTATAATTATGTCGGTCGAAAGAGGGTAGTAGTATCTT-GCCCCA 696
| ||||||||||||| |||||||||||||| |||||||||||||| | ||||| ||| |
Sbjct 636 ACTCTTTAACTAATAGTATAATTATGTCGGACGAAAGAGGGTAGT-G-ATCTTTGCCT-A 692
Query 697 AATGATGATAAATTGTAACA 716
| ||||||||||| ||||||
Sbjct 693 A-TGATGATAAATCGTAACA 711
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29087785671
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5