BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G17350.2
Length=917
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471939 jgi|Araly1|471939|fgenesh2_kg.1__1893__AT1G17350.1 1055 0.0
Ahg926606 jgi|Araly1|926606|scaffold_202167.1 547 4e-155
> Ahg471939 jgi|Araly1|471939|fgenesh2_kg.1__1893__AT1G17350.1
Length=948
Score = 1055 bits (571), Expect = 0.0
Identities = 694/747 (93%), Gaps = 34/747 (5%)
Strand=Plus/Plus
Query 6 TTGACTGTTAATCGGTAAACAGAGGCTGA-T-T------GT-GCGACGGTGACGGCAAAT 56
|||||||||||||||||||| |||||||| | | || ||||||||||||||||||
Sbjct 1 TTGACTGTTAATCGGTAAACCGAGGCTGATTGTGCGACGGTCGCGACGGTGACGGCAAAT 60
Query 57 CCAGTGACTACAG-AGACATGTCAAGGTTTCGATCGTTGTTGCAAGCCTCAGTAAATGCG 115
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CCAGTGACTACAGAAGACATGTCAAGGTTTCGATCGTTGTTGCAAGCCTCAGTAAATGCC 120
Query 116 ACAAAGAAGGCTCTTACATGGAACGTTGAAGAATGGGTGCCACCTGCAGAGAAGCATATA 175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ACAAAGAAGGCTCTTACATGGAACGTTGAAGAATGGGTGCCACCTGCAGAGAAGCATATA 180
Query 176 TTTAAGTTCCACTCTAAAGAAGACTTAAAGAAATGGCATCTCTATTCCGACTCTGAATAT 235
|||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 181 TTTAAGTTCCACTCGAAAGAGGACTTAAAGAAATGGCATCTCTATTCCGATTCTGAATAT 240
Query 236 GGAGGATTATCTTCGGCTTCCTTGGAGATCCCAGATAAAGGAGATGGATCAGATTGCACT 295
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 241 GGAGGATTATCTTCGGCTTCCTTGGAAATCCCAGATAAAGGAGATGGATCAGATTGCACT 300
Query 296 GGAGTTTTTTCGGGGAACCTATCTGTAGACCTTAGCGAAGGATCAAAATGGAACATCAGT 355
||| |||| ||||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct 301 GGAATTTTCTCGGGGAGCCTATCTGTAGACCTTAGTGAAGGATCAAAATGGAACATCAGT 360
Query 356 CGAAGTGGTTTCTGTGGAATGCGCTCAAAAAAGTTTGATGGCTTCATTGATCTCGATGGG 415
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 361 CGAAGTGGTTTCTGTGGAATGCGCTCAAAGAAGTTTGATGGCTTCATTGATCTCGATGGG 420
Query 416 TATGATGCAATAGCCCTGAGGATCAGAGGAGATGGAAGATGTTATATCTCTACTATCTAC 475
||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 421 TATGATGCAATAGCCCTGAGGCTCAGAGGAGATGGAAGATGTTATATCTCTACCATCTAT 480
Query 476 ACCGAAAACTGGGTGAACTCACCGGGACAGTCAGAAGATAACTCGTGGCAAGCTTTTGTT 535
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 ACCGAAAACTGGGTGAATTCACCGGGACAGTCAGAAGATAACTCGTGGCAAGCTTTTGTT 540
Query 536 TTTGCTCCAAAGGACAGTTGGTATACTGCTAAGGCAAGTCCTACTACTTCTATAGATATT 595
|||||||||||||||||||||||||| | | | | | | ||| |
Sbjct 541 TTTGCTCCAAAGGACAGTTGGTATAC----A-G-C---T---A--A--------GAT-T- 576
Query 596 CCTCTAGCTCGATACTTGCCAACATGGAGAGGAAATGTTATAGATGTGGAAATGGAGATG 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 577 CCTCTAGCTCGATACTTGCCAACATGGAGAGGAAATGTTATAGATGTGGAAATGGAGATG 636
Query 656 AATCCAGGTCGTGTTCTAGGTATGTCACTGTCCGTAAACGCAGAAGGTGGTGCAGTTGGA 715
||||||||||||||||| ||||||||| |||| |||||||||||||||||||| ||||||
Sbjct 637 AATCCAGGTCGTGTTCTGGGTATGTCATTGTCAGTAAACGCAGAAGGTGGTGCGGTTGGA 696
Query 716 GCTAAATCAGGAGCAGGTGATTTCCGA 742
|||||||||||||||||||||||||||
Sbjct 697 GCTAAATCAGGAGCAGGTGATTTCCGA 723
Score = 198 bits (107), Expect = 5e-50
Identities = 154/175 (88%), Gaps = 9/175 (5%)
Strand=Plus/Plus
Query 743 CAATGTATGA---TTGTTTTTGTTGTTCTTGGTTTTAGCTTGTAAAAAACAAGGCCTGAG 799
|||||||||| || ||||||||||||||||||||||||||| |||||| ||||||
Sbjct 779 CAATGTATGATGTTTTTTTTTGTTGTTCTTGGTTTTAGCTTGT-AAAAACCAGGCCT--- 834
Query 800 GAGTTGATGATACTTGATGGCTAAAAAATCGTTGCATTGTCTTTTCACT-TTGAGGCACG 858
|||||||||||||||| |||| |||| || ||||||||||||||||| | ||||| || |
Sbjct 835 GAGTTGATGATACTTGGTGGCCAAAAGATTGTTGCATTGTCTTTTCA-TATTGAGCCATG 893
Query 859 TTTTTACCATGTCATaaaataaaaaatcaaaaGGTATTATTAATCTTTTGTTTTT 913
|||||||||||| ||||||||||||||||||||||||| |||| ||| |||||||
Sbjct 894 TTTTTACCATGTGATAAAATAAAAAATCAAAAGGTATTCTTAACCTTGTGTTTTT 948
> Ahg926606 jgi|Araly1|926606|scaffold_202167.1
Length=728
Score = 547 bits (296), Expect = 4e-155
Identities = 555/675 (82%), Gaps = 37/675 (5%)
Strand=Plus/Plus
Query 74 ATGTCAAGGTTTCGATCGTTGTTGCAAGCCTCAGTAAATGCGACAAAGAAGGCTCTTACA 133
|||||| | ||| |||| |||| ||||||||| || ||||| |||||||||||||||||
Sbjct 21 ATGTCACGCTTTAGATCATTGTGGCAAGCCTCGGTGAATGCAACAAAGAAGGCTCTTACG 80
Query 134 T-GGAACGTTGAAGAATGGGTGCCACCTGCAGAGAAGCATATATTTAAGTTCCACTCTAA 192
| ||||| | ||||||||||| || |||| ||||||| |||||| |||||| | || ||
Sbjct 81 TGGGAAC-TCGAAGAATGGGTACCCCCTGTAGAGAAGTGTATATTCAAGTTCAATTCAAA 139
Query 193 AGAAGA-CTTAAAGAAATGGCATCTCTATTCCGACTCTGAATATGGAGGATTATCTTCGG 251
|||||| || ||| | |||||| || || || || |||||||||||||||||||||||||
Sbjct 140 AGAAGATCTCAAA-ACATGGCACCTGTACTCTGATTCTGAATATGGAGGATTATCTTCGG 198
Query 252 CTTCCTTGGAGATCCCAGATAAAGGAGATGGATCAGATTGCACTGGAGTTTTTTCGGGGA 311
|||| ||||| || |||| |||| ||||||||||||| | ||| ||||| || ||||
Sbjct 199 CTTCATTGGAAATTAAAGATGGAGGAAATGGATCAGATTGTATTGGTGTTTTCTCTGGGA 258
Query 312 ACCTATCTGTAGACCTTAGCGAAGGATCAAAATGGAACATCAGTCGAAGTGGTTTCTGTG 371
|||| ||| || | |||||||| ||||||||||| |||| ||| |||||||||||||
Sbjct 259 ACCTCTCTACGGATATGAGCGAAGGTTCAAAATGGAATATCAATCGTAGTGGTTTCTGTG 318
Query 372 GAATGCGCTCAAAAAAGTTTGATGGCTTCATTGATCTCGATGGGTATGATGCAATAGCCC 431
||||||| ||||| |||||||||||||| ||||||||||| ||||||||| | |||||||
Sbjct 319 GAATGCGGTCAAAGAAGTTTGATGGCTTTATTGATCTCGAAGGGTATGATTCCATAGCCC 378
Query 432 TGAGGATCAGAGGAGATGGAAGATGTTATATCTCTACTATCTACACCGAAAACTGGGTGA 491
||||| |||||||||||||||| || |||||||||||||| || ||||| ||||||||||
Sbjct 379 TGAGGCTCAGAGGAGATGGAAGGTGCTATATCTCTACTATATATACCGAGAACTGGGTGA 438
Query 492 ACTCACCGGGACA-GTCAGAAGATAACTCGTGGCAAGCTTTTGTTTTTGCTCCAAAGG-A 549
|||| || ||||| | ||||||||||||| |||||||||||||||||||||||||||| |
Sbjct 439 ACTCGCCAGGACAAG-CAGAAGATAACTCATGGCAAGCTTTTGTTTTTGCTCCAAAGGGA 497
Query 550 CAGTTGGTATACTGCTAAGGCAAGTCCTACTACTTCTATAGATATTCCTCTAGCTCGATA 609
| | ||||||| ||||||| | | | || || || | || ||| |
Sbjct 498 AACT-GGTATACAGCTAAGG----T--T-C--CT-CT-TA------C-TC--GCT--A-- 532
Query 610 CTTGCCAACATGGAGAGGAAATGTTATAGATGTGGAAATGGAGATGAATCCAGGTCGTGT 669
||| |||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 533 CTTACCAACATGGAAAGGAAATGTGATAGATGCAGAAATGGAGATGAATCCAGGTCGTGT 592
Query 670 TCTAGGTATGTCACTGTCCGTAAACGCAGAAGGTGGTG----CAGTTGGAGCTAAATCAG 725
| | |||||||| || || || || ||| |||| |||| || |||||||||||||||
Sbjct 593 TGTTGGTATGTCTCTATCTGTTAATGCACAAGGAGGTGGTTTCA-TTGGAGCTAAATCAG 651
Query 726 GAGCAGGTGATTTCC 740
| |||||||||||||
Sbjct 652 GCGCAGGTGATTTCC 666
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34005641964
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5