BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G17360.1

Length=3530
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg949799 jgi|Araly1|949799|scaffold_801686.1                        119    2e-25
  Ahg949798 jgi|Araly1|949798|scaffold_801685.1                        104    5e-21


> Ahg949799 jgi|Araly1|949799|scaffold_801686.1
Length=343

 Score =  119 bits (64),  Expect = 2e-25
 Identities = 121/146 (83%), Gaps = 14/146 (10%)
 Strand=Plus/Plus

Query  1608  TTCTGCAGGGTCTGAACAGAGACAAAAATCATTTGGTGTAGAGGATGACCTTG---TAA-  1663
             ||||||||||| |||||||||||||||||||||||||||||||||||| ||||   ||| 
Sbjct  50    TTCTGCAGGGTTTGAACAGAGACAAAAATCATTTGGTGTAGAGGATGATCTTGAGGTAAG  109

Query  1664  -------A-TGCAGATGCAGCTGG-AAAATTTGACAAGAATAGAGTTCGTGCAACATCTG  1714
                    | |||||||  |||||| |||| | ||||| |||||||||| | | ||||| |
Sbjct  110   TCTTGTGAATGCAGATTTAGCTGGGAAAAAT-GACAATAATAGAGTTCATTCGACATCCG  168

Query  1715  TGGATCAAACACAGAGGACAAGAATG  1740
             | ||||||||||||||||||||||||
Sbjct  169   TTGATCAAACACAGAGGACAAGAATG  194


> Ahg949798 jgi|Araly1|949798|scaffold_801685.1
Length=478

 Score =  104 bits (56),  Expect = 5e-21
 Identities = 63/66 (95%), Gaps = 1/66 (2%)
 Strand=Plus/Plus

Query  584  AGTTGGAAGCAGCTCGGACATTATATTCTCAAGATGATGGAGGCGTAGCAGATGCAACAC  643
            |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| 
Sbjct  245  AGTTGGAAGCAGCTCGGACATTATATTCTCAAGACGATGGAGGCGTAGCAGATGCAACAA  304

Query  644  A-GAAG  648
            | ||||
Sbjct  305  ATGAAG  310



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 133315678219


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5