BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G17370.1
Length=1772
Score E
Sequences producing significant alignments: (Bits) Value
Ahg920656 jgi|Araly1|920656|scaffold_101937.1 2185 0.0
Ahg899881 jgi|Araly1|899881|Al_scaffold_0004_531 82.4 1e-14
> Ahg920656 jgi|Araly1|920656|scaffold_101937.1
Length=1302
Score = 2185 bits (1183), Expect = 0.0
Identities = 1258/1295 (97%), Gaps = 2/1295 (0%)
Strand=Plus/Plus
Query 196 TTTCCCCGAGAGAGAAAATGCAGAGGTTGAagcagcagcagcagcagcaACAAGTTATGA 255
||||||| ||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 7 TTTCCCC--GAGAGAAAATGCAGAGGTTAAAGCAGCAGCAGCAACAGCAACAAGTTATGA 64
Query 256 TGCAGCAAGCTCTTATGCAGCAACAGTCTCTCTACCATCCTGGTCTCCTTGCCCCGCCAC 315
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 65 TGCAGCAAGCTCTTATGCAGCAACAGTCTCTCTACCATCCGGGTCTCCTTGCCCCGCCAC 124
Query 316 AGATAGAACCAATCCCAAGTGGAAATCTCCCCCCTGGTTTTGATCCAAGTACTTGCCGCA 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 125 AGATAGAACCAATCCCAAGTGGAAATCTCCCCCCTGGTTTTGATCCAAGTACTTGCCGCA 184
Query 376 GTGTGTACGTTGGAAACATCCATATTCAGGTGACGGAACCTCTGCTTCAAGAGGTTTTTG 435
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 185 GTGTGTATGTTGGAAACATCCATATTCAGGTGACGGAACCTCTGCTTCAAGAGGTTTTTG 244
Query 436 CTGGCACTGGTCCTGTAGAAAGCTGTAAACTAATTAGGAAAGAAAAGTCTTCTTATGGGT 495
|| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 245 CTAGCACTGGTCCTGTAGAAAGCTGTAAACTAATTAGGAAAGAAAAGTCTTCATATGGGT 304
Query 496 TTGTGCACTACTTTGATCGAAGATCGGCTGGTCTTGCAATCCTTTCTCTCAATGGAAGGC 555
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 305 TTGTCCACTACTTTGATCGAAGATCGGCTGGTCTTGCAATTCTTTCTCTCAATGGAAGGC 364
Query 556 ATTTGTTTGGGCAACCTATCAAGGTTAACTGGGCTTATGCGAGTGGCCAGAGGGAGGATA 615
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 365 ATTTGTTTGGGCAACCTATCAAGGTTAACTGGGCTTATGCTAGTGGCCAGAGGGAGGATA 424
Query 616 CATCAAGTCACTTCAATATATTTGTTGGGGATTTGAGTCCGGAGGTTACTGATGCAATGC 675
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 425 CCTCAAGTCACTTCAATATATTTGTTGGGGATTTGAGTCCGGAGGTTACTGATGCAATGC 484
Query 676 TGTTTACTTGCTTCTCTGTCTACCCGACTTGCTCGGATGCAAGAGTTATGTGGGATCAGA 735
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 485 TGTTTAATTGCTTCTCTGTCTACCCGAGTTGCTCGGATGCAAGAGTTATGTGGGATCAGA 544
Query 736 AAACTGGGCGTTCAAGAGGATTTGGATTTGTTTCCTTCCGTAACCAACAGGATGCCCAGA 795
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 545 AAACTGGGCGTTCAAGAGGATTTGGATTTGTTTCGTTCCGTAACCAGCAGGATGCCCAGA 604
Query 796 CTGCAATAGATGAGATAACTGGGAAATGGCTTGGTTCCAGGCAGATACGTTGCAACTGGG 855
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 605 CTGCAATAGATGAAATAACTGGGAAATGGCTTGGTTCCAGGCAGATACGCTGCAACTGGG 664
Query 856 CGACAAAGGGAGCCACTTCTGGTGAGGACAAACAGAGCTCTGATTCCAAAAGCGTCGTGG 915
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 665 CGACAAAAGGAGCCACTTCTGGTGAGGACAAACAGAGCTCTGATTCCAAAAGTGTCGTGG 724
Query 916 AACTTACCAGTGGTGTCTCGGAGGATGGTAAAGATACTACTAATGGTGAAGCTCCTGAGA 975
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 725 AACTTACCAGTGGTGTCTCGGAGGATGGTAAAGATACTACTAATGGTGAAGCTCCTGAGA 784
Query 976 ACAATGCTCAGTACACAACTGTTTACGTCGGTAATCTTGCTCCAGAGGTGTCCCAGGTTG 1035
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 785 ACAATGCTCAGTACACGACTGTTTACGTCGGTAATCTTGCTCCAGAGGTGTCTCAGGTTG 844
Query 1036 ATCTTCACCGCCACTTCCATTCCCTTGGTGCTGGGGTCATAGAGGAAGTCCGTGTTCAAA 1095
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 845 ATCTTCACCGCCACTTTCATTCCCTCGGTGCTGGGGTCATAGAGGAAGTCCGTGTTCAAA 904
Query 1096 GAGACAAAGGTTTCGGATTTGTGAGATACTCTACTCATGTAGAGGCAGCCCTCGCTATTC 1155
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 905 GAGACAAAGGTTTCGGATTTGTGAGATACTCTACTCATGTAGAGGCAGCCCTCGCTATTC 964
Query 1156 AGATGGGAAACACACATTCCTACCTTAGTGGCAGGCAAATGAAGTGTTCTTGGGGAAGCA 1215
|||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 965 AGATGGGAAATACGCATTCCTACCTCAGTGGCAGGCAAATGAAGTGTTCTTGGGGAAGCA 1024
Query 1216 AGCCAACTCCAGCAGGAACAGCTTCAAACCCGCTTCCTCCACCAGCTCCTGCACCAATCC 1275
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1025 AGCCAACTCCACCAGGAACAGCTTCAAACCCGCTTCCTCCACCAGCTCCTGCACCAATCC 1084
Query 1276 CGGGATTCTCAGCGAGTGATCTCTTGGCTTACGAGAGGCAACTAGCGATGAGCAAGATGG 1335
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1085 CGGGATTCTCAGCCAGCGATCTCTTGGCTTACGAGAGGCAACTAGCGATGAGCAAGATGG 1144
Query 1336 CAGGAATGAATCCGATGATGCATCACCCGCAGGGACAACATGCTTTTAAACAAGCTGCAA 1395
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1145 CAGGAATGAATCCGCTGATGCATCACCCGCAGGGACAACATGCTCTTAAACAAGCTGCAA 1204
Query 1396 TGGGAGCCACTGGTTCAAACCAGGCAATATATGACGGTGGTTACCAGAACGCGCAGCAGC 1455
||||||||||||| |||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 1205 TGGGAGCCACTGGCTCAAACCAAGCAATATATGACGGTGGTTTCCAGAACGCGCAGCAGC 1264
Query 1456 TCATGTACTACCAGTAAGATCTTCCTCGGAGCCGT 1490
||||||||||||||| |||||||||| ||||||||
Sbjct 1265 TCATGTACTACCAGTGAGATCTTCCTTGGAGCCGT 1299
> Ahg899881 jgi|Araly1|899881|Al_scaffold_0004_531
Length=234
Score = 82.4 bits (44), Expect = 1e-14
Identities = 46/47 (98%), Gaps = 0/47 (0%)
Strand=Plus/Plus
Query 380 GTACGTTGGAAACATCCATATTCAGGTGACGGAACCTCTGCTTCAAG 426
||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 139 GTATGTTGGAAACATCCATATTCAGGTGACGGAACCTCTGCTTCAAG 185
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66505567770
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5