BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G17370.1 Length=1772 Score E Sequences producing significant alignments: (Bits) Value Ahg920656 jgi|Araly1|920656|scaffold_101937.1 2185 0.0 Ahg899881 jgi|Araly1|899881|Al_scaffold_0004_531 82.4 1e-14 > Ahg920656 jgi|Araly1|920656|scaffold_101937.1 Length=1302 Score = 2185 bits (1183), Expect = 0.0 Identities = 1258/1295 (97%), Gaps = 2/1295 (0%) Strand=Plus/Plus Query 196 TTTCCCCGAGAGAGAAAATGCAGAGGTTGAagcagcagcagcagcagcaACAAGTTATGA 255 ||||||| ||||||||||||||||||| |||||||||||||| |||||||||||||||| Sbjct 7 TTTCCCC--GAGAGAAAATGCAGAGGTTAAAGCAGCAGCAGCAACAGCAACAAGTTATGA 64 Query 256 TGCAGCAAGCTCTTATGCAGCAACAGTCTCTCTACCATCCTGGTCTCCTTGCCCCGCCAC 315 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 65 TGCAGCAAGCTCTTATGCAGCAACAGTCTCTCTACCATCCGGGTCTCCTTGCCCCGCCAC 124 Query 316 AGATAGAACCAATCCCAAGTGGAAATCTCCCCCCTGGTTTTGATCCAAGTACTTGCCGCA 375 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 125 AGATAGAACCAATCCCAAGTGGAAATCTCCCCCCTGGTTTTGATCCAAGTACTTGCCGCA 184 Query 376 GTGTGTACGTTGGAAACATCCATATTCAGGTGACGGAACCTCTGCTTCAAGAGGTTTTTG 435 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 185 GTGTGTATGTTGGAAACATCCATATTCAGGTGACGGAACCTCTGCTTCAAGAGGTTTTTG 244 Query 436 CTGGCACTGGTCCTGTAGAAAGCTGTAAACTAATTAGGAAAGAAAAGTCTTCTTATGGGT 495 || ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 245 CTAGCACTGGTCCTGTAGAAAGCTGTAAACTAATTAGGAAAGAAAAGTCTTCATATGGGT 304 Query 496 TTGTGCACTACTTTGATCGAAGATCGGCTGGTCTTGCAATCCTTTCTCTCAATGGAAGGC 555 |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 305 TTGTCCACTACTTTGATCGAAGATCGGCTGGTCTTGCAATTCTTTCTCTCAATGGAAGGC 364 Query 556 ATTTGTTTGGGCAACCTATCAAGGTTAACTGGGCTTATGCGAGTGGCCAGAGGGAGGATA 615 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 365 ATTTGTTTGGGCAACCTATCAAGGTTAACTGGGCTTATGCTAGTGGCCAGAGGGAGGATA 424 Query 616 CATCAAGTCACTTCAATATATTTGTTGGGGATTTGAGTCCGGAGGTTACTGATGCAATGC 675 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 425 CCTCAAGTCACTTCAATATATTTGTTGGGGATTTGAGTCCGGAGGTTACTGATGCAATGC 484 Query 676 TGTTTACTTGCTTCTCTGTCTACCCGACTTGCTCGGATGCAAGAGTTATGTGGGATCAGA 735 |||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 485 TGTTTAATTGCTTCTCTGTCTACCCGAGTTGCTCGGATGCAAGAGTTATGTGGGATCAGA 544 Query 736 AAACTGGGCGTTCAAGAGGATTTGGATTTGTTTCCTTCCGTAACCAACAGGATGCCCAGA 795 |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| Sbjct 545 AAACTGGGCGTTCAAGAGGATTTGGATTTGTTTCGTTCCGTAACCAGCAGGATGCCCAGA 604 Query 796 CTGCAATAGATGAGATAACTGGGAAATGGCTTGGTTCCAGGCAGATACGTTGCAACTGGG 855 ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 605 CTGCAATAGATGAAATAACTGGGAAATGGCTTGGTTCCAGGCAGATACGCTGCAACTGGG 664 Query 856 CGACAAAGGGAGCCACTTCTGGTGAGGACAAACAGAGCTCTGATTCCAAAAGCGTCGTGG 915 ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 665 CGACAAAAGGAGCCACTTCTGGTGAGGACAAACAGAGCTCTGATTCCAAAAGTGTCGTGG 724 Query 916 AACTTACCAGTGGTGTCTCGGAGGATGGTAAAGATACTACTAATGGTGAAGCTCCTGAGA 975 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 725 AACTTACCAGTGGTGTCTCGGAGGATGGTAAAGATACTACTAATGGTGAAGCTCCTGAGA 784 Query 976 ACAATGCTCAGTACACAACTGTTTACGTCGGTAATCTTGCTCCAGAGGTGTCCCAGGTTG 1035 |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| Sbjct 785 ACAATGCTCAGTACACGACTGTTTACGTCGGTAATCTTGCTCCAGAGGTGTCTCAGGTTG 844 Query 1036 ATCTTCACCGCCACTTCCATTCCCTTGGTGCTGGGGTCATAGAGGAAGTCCGTGTTCAAA 1095 |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| Sbjct 845 ATCTTCACCGCCACTTTCATTCCCTCGGTGCTGGGGTCATAGAGGAAGTCCGTGTTCAAA 904 Query 1096 GAGACAAAGGTTTCGGATTTGTGAGATACTCTACTCATGTAGAGGCAGCCCTCGCTATTC 1155 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 905 GAGACAAAGGTTTCGGATTTGTGAGATACTCTACTCATGTAGAGGCAGCCCTCGCTATTC 964 Query 1156 AGATGGGAAACACACATTCCTACCTTAGTGGCAGGCAAATGAAGTGTTCTTGGGGAAGCA 1215 |||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 965 AGATGGGAAATACGCATTCCTACCTCAGTGGCAGGCAAATGAAGTGTTCTTGGGGAAGCA 1024 Query 1216 AGCCAACTCCAGCAGGAACAGCTTCAAACCCGCTTCCTCCACCAGCTCCTGCACCAATCC 1275 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1025 AGCCAACTCCACCAGGAACAGCTTCAAACCCGCTTCCTCCACCAGCTCCTGCACCAATCC 1084 Query 1276 CGGGATTCTCAGCGAGTGATCTCTTGGCTTACGAGAGGCAACTAGCGATGAGCAAGATGG 1335 ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1085 CGGGATTCTCAGCCAGCGATCTCTTGGCTTACGAGAGGCAACTAGCGATGAGCAAGATGG 1144 Query 1336 CAGGAATGAATCCGATGATGCATCACCCGCAGGGACAACATGCTTTTAAACAAGCTGCAA 1395 |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1145 CAGGAATGAATCCGCTGATGCATCACCCGCAGGGACAACATGCTCTTAAACAAGCTGCAA 1204 Query 1396 TGGGAGCCACTGGTTCAAACCAGGCAATATATGACGGTGGTTACCAGAACGCGCAGCAGC 1455 ||||||||||||| |||||||| ||||||||||||||||||| ||||||||||||||||| Sbjct 1205 TGGGAGCCACTGGCTCAAACCAAGCAATATATGACGGTGGTTTCCAGAACGCGCAGCAGC 1264 Query 1456 TCATGTACTACCAGTAAGATCTTCCTCGGAGCCGT 1490 ||||||||||||||| |||||||||| |||||||| Sbjct 1265 TCATGTACTACCAGTGAGATCTTCCTTGGAGCCGT 1299 > Ahg899881 jgi|Araly1|899881|Al_scaffold_0004_531 Length=234 Score = 82.4 bits (44), Expect = 1e-14 Identities = 46/47 (98%), Gaps = 0/47 (0%) Strand=Plus/Plus Query 380 GTACGTTGGAAACATCCATATTCAGGTGACGGAACCTCTGCTTCAAG 426 ||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 139 GTATGTTGGAAACATCCATATTCAGGTGACGGAACCTCTGCTTCAAG 185 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 66505567770 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5