BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G17380.1
Length=1133
Score E
Sequences producing significant alignments: (Bits) Value
Ahg312706 jgi|Araly1|312706|fgenesh1_pm.C_scaffold_1001486 1096 0.0
> Ahg312706 jgi|Araly1|312706|fgenesh1_pm.C_scaffold_1001486
Length=831
Score = 1096 bits (593), Expect = 0.0
Identities = 759/836 (91%), Gaps = 23/836 (3%)
Strand=Plus/Plus
Query 148 GTCGAGCAATGAAAATGCTAAGGCACAAGCGCCGGAGAAATCTGACTTTACCCGGAGATG 207
||||| ||||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 3 GTCGAAAAATGAAAATGCTAAGGCACAAGCGCCGGAGAAATCCGACTTTACCAGGAGATG 62
Query 208 TAGTTTGCTCAGCCGTTACTTGAAGGAGAAGGGTAGTTTCGGAAACATTGATCTTGGCTT 267
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 63 TAGTTTGCTCAGCCGTTACTTGAAGGAGAAGGGTAGTTTCGGAAACATAGATCTTGGCTT 122
Query 268 -ATACCGAAAACCCGATTCCAGTCTCGCGTTGCCCGGAAAATTCGATCCACCAGGGAAAC 326
| ||||||||||||||||| ||||| ||||| ||||| || || ||||||||||| |
Sbjct 123 GCT-CCGAAAACCCGATTCCAATCTCGGGTTGCTCGGAACATCCGCTCCACCAGGGAGTC 181
Query 327 AAAATGCGATGCATAAGGCAGGGCATTCCAAAGGCGAACCCTCTACCTCATCAGGAGGCA 386
||||||||||||| |||||||||||||||||||||||||||||| | ||||| |||||||
Sbjct 182 AAAATGCGATGCAGAAGGCAGGGCATTCCAAAGGCGAACCCTCTGCGTCATCTGGAGGCA 241
Query 387 AAGTCAAAGATGTTGCTGACCTCAGTGAATCACAGCCAGGAAGTTCGCAGCTGACCATAT 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 242 AAGTCAAAGATGTTGCTGACCTCAGTGAATCACAGCCAGGAAGTTCGCAGCTGACCATAT 301
Query 447 TCTTCGGAGGGAAAGTTTTAGTATATAATGAGTTCCCCGTAGACAAAGCTAAAGAGATTA 506
|||| |||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 302 TCTTTGGAGGGAAAGTTTTAGTATATAATGAGTTCCCTGCAGACAAAGCTAAAGAGATTA 361
Query 507 TGGAAGTAGCAAAACAAGCCAAGCCTGTGACTGAGATTAACATTCAGACACCAATCAATG 566
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 362 TGGAAGTAGCAAAACAAGCCAAGCCTCTGACTGAGATTAACATTCAGACACCAATCAATG 421
Query 567 ACGAAAACAACAA-CAACAAGAG--CAGCATGGTTCTTCC-TGATC-T-CA-ATGA-GCC 618
||||||||| || ||||| | | | | || | || | ||| | | || || ||
Sbjct 422 TCGAAAACAA-AAGCAACATG-GTTCTCCCTGAT-CT-CAATGAGCCTACAGATTCTGCT 477
Query 619 --TACTGATAATAATCACC-TAACAAAGGAACAACA--A-CAGCAACAAGAACAAAATCA 672
||||||||||||||||| || ||||||||||||| | ||||||||||||||||||||
Sbjct 478 GATACTGATAATAATCACCCTA-CAAAGGAACAACAGCAGCAGCAACAAGAACAAAATCA 536
Query 673 GATCGTGGAACGTATAGCACGTAGAGCTTCCCTCCATCGATTCTTTGCTAAACGGAAAGA 732
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 537 GATCGTGGAACGTATAGCACGTAGAGCTTCGCTTCATCGATTCTTTGCTAAACGGAAAGA 596
Query 733 CAGAGCTGTGGCTAGGGCTCCGTACCAAGTTAACCAAAACGCAGGTCATCATCGTTATCC 792
||||||||||||||||||||| |||||||||||||||||||| || || |||||||||||
Sbjct 597 CAGAGCTGTGGCTAGGGCTCCATACCAAGTTAACCAAAACGCGGGACACCATCGTTATCC 656
Query 793 TCCCAAGCCAGAGATTGTAACCGGTCAACCACTAGAGGCAGGACAGTCGTCACAAAGACC 852
||||||||||||| |||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 657 TCCCAAGCCAGAGGCTGTAGCCGGTCAACCACTAGAGCCAGGACAGTCGTCACAAAGACA 716
Query 853 GCCGGATAACGCCATTGGTCAAACCATGGCCCAT-ATCAAATCAGACGGTGATAAAGATG 911
||||||||| ||||||| ||||||| ||||||| | ||||||||| |||||||||||||
Sbjct 717 GCCGGATAATGCCATTGCTCAAACCGTGGCCCAACA-CAAATCAGATGGTGATAAAGATG 775
Query 912 ATATTATGAAGATTGAAGAAGGCCAAAGTTCGAAAGATCTCGATCTAAGGCTATAG 967
||||||| | |||||||||||||||||||| |||||||||||||||| |||||||
Sbjct 776 TTATTATGGATATTGAAGAAGGCCAAAGTTCAAAAGATCTCGATCTAAAGCTATAG 831
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42240192036
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5