BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G17400.1
Length=1477
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471945 jgi|Araly1|471945|fgenesh2_kg.1__1899__AT1G17400.1 1997 0.0
Ahg476382 jgi|Araly1|476382|fgenesh2_kg.2__1512__AT1G72490.1 316 2e-85
> Ahg471945 jgi|Araly1|471945|fgenesh2_kg.1__1899__AT1G17400.1
Length=1427
Score = 1997 bits (1081), Expect = 0.0
Identities = 1353/1474 (92%), Gaps = 60/1474 (4%)
Strand=Plus/Plus
Query 1 GAACACAA-ACTTACAAGAACAGTTTAAAAGtttttttCTTACTTAAAATTCTCTCTTTT 59
|||||||| | |||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 1 GAACACAAGA-TTACAAGAACAGTTTAGAAGTTTTTTTCTTTCTTAAAATTCTCTCTTTT 59
Query 60 AAGTAGTCAAAGTTTGGAACTTGAACACCATAAAATTCATCAATTTTACTCCAACTTGTC 119
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 60 AAGTAGTCAAAGTTTGGAACTTGAACACCATCAAATTCATCAATTTTACTCCAACTTGTC 119
Query 120 TAAAAATCTAATCTTTTTTGATCACTATAATA-ACCAAT--CTTG-ATTCATCAATAACT 175
||||||||||||| |||| || || | ||| | |||| || | |||||| || | |
Sbjct 120 TAAAAATCTAATC-CTTTTAAT--CT-TGATATATCAATAACTCGAATTCAT--AT-A-T 171
Query 176 CGAGTTGAGAAATATATACATTGATCTCTCTGTTACAGTCAATTGTCAGaaaaaa-aG-A 233
| | | | | || || ||||||||||||||||||| ||||||||| |||||| || |
Sbjct 172 --A--T-ATATACAT-TA-ATTGATCTCTCTGTTACAGACAATTGTCA-AAAAAATAGAA 223
Query 234 AACATGAAGTTCTTCGGGTGGATGCAGAACAAGCTTAATGGGGATCATAACAGAACAAGC 293
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 224 AACATGAAGTTCTTTGGGTGGATGCAGAACAAGCTTAATGGGGATCATAACAGAACAAGC 283
Query 294 ACTTCCTCTGCTTCTTCTCATCATGTGAAGCAAGAACCAAGAGAGGAGTTTAGCGACTGG 353
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 284 ACTTCCTCTGCTTCTTCTCATCATGTGAAGCAAGAGCCAAGAGAGGAGTTTAGAGACTGG 343
Query 354 CCTCACGCGCTGCTTGCTATTGGAACATTCGGTACAACAAGCAATAGTGTGAGCGAAAAC 413
||||||||| |||| ||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 344 CCTCACGCGTTGCTCGCTATTGGAACGTTTGGTACAACAAGCAATAGTGTGAGCGAAAAC 403
Query 414 GAGAGCAAGAATGTTCATGAAGAGATTGAAGCGGAGAAGAAGTGTACGGCACAATCCGAG 473
|||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||
Sbjct 404 GAGAGCAAGAATGTTCATGAGGAGATTGAAGCGGAGAAGAAGTGTACCGCAAAATCCGAA 463
Query 474 CAAGAAGAAGAGCCTTCTTCCTCTGTCAATCTTGAGGATTTCACTCCTGAAGAGGTTGGA 533
|||||||||||||||||||| |||||| ||||||| |||||||||||||| |||||||||
Sbjct 464 CAAGAAGAAGAGCCTTCTTCTTCTGTCGATCTTGAAGATTTCACTCCTGAGGAGGTTGGA 523
Query 534 AAGTTGCAGAAAGAGTTGATGAAGCTCTTGTCAAGAACTAAGAAAAGGAAGTCTGATGTG 593
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 524 AAGTTGCAGAAGGAGTTGATGAAGCTCTTGTCAAGAACTAAGAAAAGGAAGTCTGATGTG 583
Query 594 AATAGAGAGCTCATGAAAAATCTTCCTTTAGATAGATTCTTGAACTGTCCATCGAGTTTA 653
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 584 AATAGAGAGCTCATGAAAAATCTTCCTTTGGATAGATTCTTGAACTGTCCATCGAGTTTA 643
Query 654 GAGGTGGATAGGCGAATCAGCAATGCGCTTAGCGCTGTTGTGGATTCGTCAGAGGAGAAT 713
||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 644 GAGGTCGATAGGCGAATCAGCAATGCACTTAGCGCTGTTGTGGATTCGTCTGAGGAGAAT 703
Query 714 AAGGAGGAAGATATGGAGCGAACGATTAACGTTATTCTAGGTagatgcaaagagatatca 773
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 704 AAGGAGGAAGATATGGAGCGAACGATTAGCGTTATTCTAGGTAGATGCAAAGAGATATCA 763
Query 774 atagagagtaagaataacaagaagaagagagacataagcaagaaCTCTGTCTCATATCTT 833
|||||||||||||| || |||||||||||||| |||||||||| ||||||||||||||||
Sbjct 764 ATAGAGAGTAAGAAGAATAAGAAGAAGAGAGATATAAGCAAGACCTCTGTCTCATATCTT 823
Query 834 TTCAAGAAGATTTTTGTCTGCGCAGATGGGATTTCTACAGCCCCAAGCCCTAGCTTGAGA 893
|| ||||||||||| ||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 824 TTGAAGAAGATTTTCGTCTGCGCAAATGGGATTTCTACAGCCCCAAGCCCTAGCCTGAGA 883
Query 894 GACACGCTTCAAGAATCAAGAATGGAGAAGTTGTTGAAGATGATGCTCCATAAGAAGATT 953
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 884 GACACGCTTCAAGAATCAAGAATGGAGAAGTTGTTGAAGATGATGCTCCATAAGAAGATT 943
Query 954 AATGCTCAAGCCTCCTCGAAACCAACATCATTGACAACAAAGAGATACTTGCAAGACAAG 1013
||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 944 AATGCTCAAGCCTCCTCGAAACCAACATCATCGACAACAAAGAGATACTTGGAAGACAAG 1003
Query 1014 AAACAGCTCTCACTGAAGAGTGA-G--GAAGAAGAAACTAGCGAAAGAAGAAGTAGTAGC 1070
|||||||||||| |||||||||| | |||||||||||||||||||||||||||||| ||
Sbjct 1004 AAACAGCTCTCATTGAAGAGTGAAGAAGAAGAAGAAACTAGCGAAAGAAGAAGTAGTGGC 1063
Query 1071 GATGGATATAAATGGGTCAAAACAGATTCTGATTTCATAGTTCTCGAGATATGATCCAAC 1130
|| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||
Sbjct 1064 GACGGATATAAATGGGTCAAAACAGATTCTGATTTCATAGTTCTTGAGATCTGATCAAAC 1123
Query 1131 CTTCATCATTCAAGCTCTTGCAAAATCTTCTTCCAAGTATAGATTCA-AAATCTTCTCGA 1189
||||||||||||||||||||||||||||| ||||||||| || | | ||||||||||||
Sbjct 1124 CTTCATCATTCAAGCTCTTGCAAAATCTT-TTCCAAGTACAGGGTAACAAATCTTCTCGA 1182
Query 1190 GAAAATTTAAAGAAGTAATG-AATGAGTCTCCCATTTCAGAGGAAtttttttGGTGCATC 1248
|||||||||||||| ||||| ||||||||||||||||| |||||| ||||| | | |
Sbjct 1183 GAAAATTTAAAGAAATAATGTAATGAGTCTCCCATTTCCGAGGAAATTTTT-G-T---T- 1236
Query 1249 TGCAAATTAAGCCCTGGACGTTTCAGAATGTTTTTAACTTCtttttttGCATGATTTGAT 1308
| || | | || ||| | | | |||||||||||| ||||||||||||
Sbjct 1237 T-CAGA--A-----TG----TTT--G--T-T----AACTTCTTTTTT-GCATGATTTGAT 1274
Query 1309 CTGTGGGCATTTGTGTCCATAGAACCAAA-CATGTTCTTGAAATTGCGTACATGTGTAGA 1367
||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1275 CTGTGGGAATTTGGGTCCATAGAACCAAAACATGTTCTTGAAATTGCGTACATGTGTAGA 1334
Query 1368 TATGTATATGAGATGTCAGAGTGATATACATACATACCTGTGTGCGTGTGATTTGTGTAA 1427
||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 1335 TATGTATATGAAATGTCAGAGTG-TATACATACATACATGTGTGCGTGTGATTTGTGTAA 1393
Query 1428 TTTTAAGGTGGATAACCTCAGCTTATAAAGATTC 1461
||||||||||||||||||||||||||||||||||
Sbjct 1394 TTTTAAGGTGGATAACCTCAGCTTATAAAGATTC 1427
> Ahg476382 jgi|Araly1|476382|fgenesh2_kg.2__1512__AT1G72490.1
Length=1316
Score = 316 bits (171), Expect = 2e-85
Identities = 490/633 (77%), Gaps = 66/633 (10%)
Strand=Plus/Plus
Query 510 GATTTCACTCCTGAAGAGGTT-GGAAAGTTGCAGAAAGAGTTGATGAAGCTCTTGTC--- 565
||||||||||| || || ||| ||||| ||||||| ||| ||| ||| |||||| |
Sbjct 436 GATTTCACTCCAGAGGAAGTTGGGAAA-CTGCAGAAGGAGCTGACGAAACTCTTGACGAG 494
Query 566 AA-GAACTAAGAAAAGGAAGTCTGATGTGAATAGAGAGCTCATGAAAAATCTTCCTTTAG 624
|| || | ||||| |||||||||||||||||| |||| | || ||||||||||| |
Sbjct 495 AAGGAGC-AAGAAGAGGAAGTCTGATGTGAATCGAGA-AT--TGGCGAATCTTCCTTTGG 550
Query 625 ATAGATTCTTGAACTGTCCATCGAGT-TTAGAGGTGGATAGGCGAATCAGCAATGCGCTT 683
||||||||||||| ||||| |||||| || ||||| ||||| |||||||||| |
Sbjct 551 ATAGATTCTTGAATTGTCCTTCGAGTCTT-GAGGTCGATAGAAGAATCAGCAA----C-- 603
Query 684 AGCGCTGTTGTGGATTCGTCAGAGGAGAATAAGGAGGAAGATATGGAGCGAACGATTAAC 743
||||| |||| || | ||| ||||| ||||| || ||||| || || |
Sbjct 604 -GCGCT-TTGT-GA----T-----GAG---AAGGAAGAAGACATTGAGCGTACAATCAGT 648
Query 744 GTTATTC-TAGGTagatgcaaagagatatcaatagagagtaagaa-ta-ac-aag-a-ag 797
|||| || |||| |||||||| | ||| || | |||||| ||||| | || ||| | ||
Sbjct 649 GTTA-TCTTAGGGAGATGCAAGGCGATTTCGACAGAGAGCAAGAACAAGACGAAGAAGAG 707
Query 798 -aagagagacataagcaagaa-CTCTGTCTCAT-ATCTTTTCAAGAAGATTTTTGTCTGC 854
||||||||| | ||||| || |||||| || | ||||| |||||||||| ||||||||
Sbjct 708 TAAGAGAGACTTGAGCAA-AACCTCTGTTTC-TCATCTTCTCAAGAAGATGTTTGTCTGT 765
Query 855 GCAGATGGGATT-TCTACAGCCCCAAGCCCTAGCTTGAGAGACACGCTTCAAGAATCAAG 913
|||| ||| || ||| ||| || ||||||||||||||||||||| |||||||| ||||
Sbjct 766 ACAGA-GGGTTTCTCTCCAGTTCCTAGCCCTAGCTTGAGAGACACGTTTCAAGAAACAAG 824
Query 914 AATGGAGAAGTTGTTGAAG-ATGATGCTCCATAAGAAGATTAATGCTCAAGCCTCCTCGA 972
||||||||||||| || || |||||||| || ||||| || || ||||| || || |
Sbjct 825 AATGGAGAAGTTGCTG-AGAATGATGCTACACAAGAAAATAAACACTCAA-ACTTCTTTA 882
Query 973 AA-CCAACATCATTGACAACAAAGAGATACTTGCAAGACAAGAAACAGCTCTCACTGAAG 1031
|| | ||||||| || | ||| | |||||||||||||||| |||| || || |||||
Sbjct 883 AAGCAAACATCA---ACGA-AAA-A-ATACTTGCAAGACAAGCAACAACTTTCTTTGAAG 936
Query 1032 AGTGAGGAAGAAGAAACTAGCGAAAGAAGAAGTAGTAGCGATGGATATAAATGGGTCAAA 1091
| ||||||||||| | | | | |||||||||||||||||| |||||||||||||
Sbjct 937 AATGAGGAAGAAG--A--A--G--A-AAGAAGTAGTAGCGATGGGGGTAAATGGGTCAAA 987
Query 1092 ACAGATTCTGATTTCATAGTTCTCGAGATATGA 1124
||||||||||||||||| ||||| ||||| |||
Sbjct 988 ACAGATTCTGATTTCATTGTTCTTGAGATCTGA 1020
Score = 65.8 bits (35), Expect = 9e-10
Identities = 40/42 (95%), Gaps = 2/42 (5%)
Strand=Plus/Plus
Query 235 ACATGAAGTTCTTCGGGTGGATGCAGAACAAGCTTA-ATGGG 275
|||||||||||||||||||||||||||||||||| | |||||
Sbjct 161 ACATGAAGTTCTTCGGGTGGATGCAGAACAAGCT-ACATGGG 201
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55268945495
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5