BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G17400.1 Length=1477 Score E Sequences producing significant alignments: (Bits) Value Ahg471945 jgi|Araly1|471945|fgenesh2_kg.1__1899__AT1G17400.1 1997 0.0 Ahg476382 jgi|Araly1|476382|fgenesh2_kg.2__1512__AT1G72490.1 316 2e-85 > Ahg471945 jgi|Araly1|471945|fgenesh2_kg.1__1899__AT1G17400.1 Length=1427 Score = 1997 bits (1081), Expect = 0.0 Identities = 1353/1474 (92%), Gaps = 60/1474 (4%) Strand=Plus/Plus Query 1 GAACACAA-ACTTACAAGAACAGTTTAAAAGtttttttCTTACTTAAAATTCTCTCTTTT 59 |||||||| | |||||||||||||||| ||||||||||||| |||||||||||||||||| Sbjct 1 GAACACAAGA-TTACAAGAACAGTTTAGAAGTTTTTTTCTTTCTTAAAATTCTCTCTTTT 59 Query 60 AAGTAGTCAAAGTTTGGAACTTGAACACCATAAAATTCATCAATTTTACTCCAACTTGTC 119 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 60 AAGTAGTCAAAGTTTGGAACTTGAACACCATCAAATTCATCAATTTTACTCCAACTTGTC 119 Query 120 TAAAAATCTAATCTTTTTTGATCACTATAATA-ACCAAT--CTTG-ATTCATCAATAACT 175 ||||||||||||| |||| || || | ||| | |||| || | |||||| || | | Sbjct 120 TAAAAATCTAATC-CTTTTAAT--CT-TGATATATCAATAACTCGAATTCAT--AT-A-T 171 Query 176 CGAGTTGAGAAATATATACATTGATCTCTCTGTTACAGTCAATTGTCAGaaaaaa-aG-A 233 | | | | | || || ||||||||||||||||||| ||||||||| |||||| || | Sbjct 172 --A--T-ATATACAT-TA-ATTGATCTCTCTGTTACAGACAATTGTCA-AAAAAATAGAA 223 Query 234 AACATGAAGTTCTTCGGGTGGATGCAGAACAAGCTTAATGGGGATCATAACAGAACAAGC 293 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 224 AACATGAAGTTCTTTGGGTGGATGCAGAACAAGCTTAATGGGGATCATAACAGAACAAGC 283 Query 294 ACTTCCTCTGCTTCTTCTCATCATGTGAAGCAAGAACCAAGAGAGGAGTTTAGCGACTGG 353 ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| Sbjct 284 ACTTCCTCTGCTTCTTCTCATCATGTGAAGCAAGAGCCAAGAGAGGAGTTTAGAGACTGG 343 Query 354 CCTCACGCGCTGCTTGCTATTGGAACATTCGGTACAACAAGCAATAGTGTGAGCGAAAAC 413 ||||||||| |||| ||||||||||| || |||||||||||||||||||||||||||||| Sbjct 344 CCTCACGCGTTGCTCGCTATTGGAACGTTTGGTACAACAAGCAATAGTGTGAGCGAAAAC 403 Query 414 GAGAGCAAGAATGTTCATGAAGAGATTGAAGCGGAGAAGAAGTGTACGGCACAATCCGAG 473 |||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||| Sbjct 404 GAGAGCAAGAATGTTCATGAGGAGATTGAAGCGGAGAAGAAGTGTACCGCAAAATCCGAA 463 Query 474 CAAGAAGAAGAGCCTTCTTCCTCTGTCAATCTTGAGGATTTCACTCCTGAAGAGGTTGGA 533 |||||||||||||||||||| |||||| ||||||| |||||||||||||| ||||||||| Sbjct 464 CAAGAAGAAGAGCCTTCTTCTTCTGTCGATCTTGAAGATTTCACTCCTGAGGAGGTTGGA 523 Query 534 AAGTTGCAGAAAGAGTTGATGAAGCTCTTGTCAAGAACTAAGAAAAGGAAGTCTGATGTG 593 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 524 AAGTTGCAGAAGGAGTTGATGAAGCTCTTGTCAAGAACTAAGAAAAGGAAGTCTGATGTG 583 Query 594 AATAGAGAGCTCATGAAAAATCTTCCTTTAGATAGATTCTTGAACTGTCCATCGAGTTTA 653 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 584 AATAGAGAGCTCATGAAAAATCTTCCTTTGGATAGATTCTTGAACTGTCCATCGAGTTTA 643 Query 654 GAGGTGGATAGGCGAATCAGCAATGCGCTTAGCGCTGTTGTGGATTCGTCAGAGGAGAAT 713 ||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||| Sbjct 644 GAGGTCGATAGGCGAATCAGCAATGCACTTAGCGCTGTTGTGGATTCGTCTGAGGAGAAT 703 Query 714 AAGGAGGAAGATATGGAGCGAACGATTAACGTTATTCTAGGTagatgcaaagagatatca 773 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 704 AAGGAGGAAGATATGGAGCGAACGATTAGCGTTATTCTAGGTAGATGCAAAGAGATATCA 763 Query 774 atagagagtaagaataacaagaagaagagagacataagcaagaaCTCTGTCTCATATCTT 833 |||||||||||||| || |||||||||||||| |||||||||| |||||||||||||||| Sbjct 764 ATAGAGAGTAAGAAGAATAAGAAGAAGAGAGATATAAGCAAGACCTCTGTCTCATATCTT 823 Query 834 TTCAAGAAGATTTTTGTCTGCGCAGATGGGATTTCTACAGCCCCAAGCCCTAGCTTGAGA 893 || ||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 824 TTGAAGAAGATTTTCGTCTGCGCAAATGGGATTTCTACAGCCCCAAGCCCTAGCCTGAGA 883 Query 894 GACACGCTTCAAGAATCAAGAATGGAGAAGTTGTTGAAGATGATGCTCCATAAGAAGATT 953 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 884 GACACGCTTCAAGAATCAAGAATGGAGAAGTTGTTGAAGATGATGCTCCATAAGAAGATT 943 Query 954 AATGCTCAAGCCTCCTCGAAACCAACATCATTGACAACAAAGAGATACTTGCAAGACAAG 1013 ||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| Sbjct 944 AATGCTCAAGCCTCCTCGAAACCAACATCATCGACAACAAAGAGATACTTGGAAGACAAG 1003 Query 1014 AAACAGCTCTCACTGAAGAGTGA-G--GAAGAAGAAACTAGCGAAAGAAGAAGTAGTAGC 1070 |||||||||||| |||||||||| | |||||||||||||||||||||||||||||| || Sbjct 1004 AAACAGCTCTCATTGAAGAGTGAAGAAGAAGAAGAAACTAGCGAAAGAAGAAGTAGTGGC 1063 Query 1071 GATGGATATAAATGGGTCAAAACAGATTCTGATTTCATAGTTCTCGAGATATGATCCAAC 1130 || ||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||| Sbjct 1064 GACGGATATAAATGGGTCAAAACAGATTCTGATTTCATAGTTCTTGAGATCTGATCAAAC 1123 Query 1131 CTTCATCATTCAAGCTCTTGCAAAATCTTCTTCCAAGTATAGATTCA-AAATCTTCTCGA 1189 ||||||||||||||||||||||||||||| ||||||||| || | | |||||||||||| Sbjct 1124 CTTCATCATTCAAGCTCTTGCAAAATCTT-TTCCAAGTACAGGGTAACAAATCTTCTCGA 1182 Query 1190 GAAAATTTAAAGAAGTAATG-AATGAGTCTCCCATTTCAGAGGAAtttttttGGTGCATC 1248 |||||||||||||| ||||| ||||||||||||||||| |||||| ||||| | | | Sbjct 1183 GAAAATTTAAAGAAATAATGTAATGAGTCTCCCATTTCCGAGGAAATTTTT-G-T---T- 1236 Query 1249 TGCAAATTAAGCCCTGGACGTTTCAGAATGTTTTTAACTTCtttttttGCATGATTTGAT 1308 | || | | || ||| | | | |||||||||||| |||||||||||| Sbjct 1237 T-CAGA--A-----TG----TTT--G--T-T----AACTTCTTTTTT-GCATGATTTGAT 1274 Query 1309 CTGTGGGCATTTGTGTCCATAGAACCAAA-CATGTTCTTGAAATTGCGTACATGTGTAGA 1367 ||||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1275 CTGTGGGAATTTGGGTCCATAGAACCAAAACATGTTCTTGAAATTGCGTACATGTGTAGA 1334 Query 1368 TATGTATATGAGATGTCAGAGTGATATACATACATACCTGTGTGCGTGTGATTTGTGTAA 1427 ||||||||||| ||||||||||| ||||||||||||| |||||||||||||||||||||| Sbjct 1335 TATGTATATGAAATGTCAGAGTG-TATACATACATACATGTGTGCGTGTGATTTGTGTAA 1393 Query 1428 TTTTAAGGTGGATAACCTCAGCTTATAAAGATTC 1461 |||||||||||||||||||||||||||||||||| Sbjct 1394 TTTTAAGGTGGATAACCTCAGCTTATAAAGATTC 1427 > Ahg476382 jgi|Araly1|476382|fgenesh2_kg.2__1512__AT1G72490.1 Length=1316 Score = 316 bits (171), Expect = 2e-85 Identities = 490/633 (77%), Gaps = 66/633 (10%) Strand=Plus/Plus Query 510 GATTTCACTCCTGAAGAGGTT-GGAAAGTTGCAGAAAGAGTTGATGAAGCTCTTGTC--- 565 ||||||||||| || || ||| ||||| ||||||| ||| ||| ||| |||||| | Sbjct 436 GATTTCACTCCAGAGGAAGTTGGGAAA-CTGCAGAAGGAGCTGACGAAACTCTTGACGAG 494 Query 566 AA-GAACTAAGAAAAGGAAGTCTGATGTGAATAGAGAGCTCATGAAAAATCTTCCTTTAG 624 || || | ||||| |||||||||||||||||| |||| | || ||||||||||| | Sbjct 495 AAGGAGC-AAGAAGAGGAAGTCTGATGTGAATCGAGA-AT--TGGCGAATCTTCCTTTGG 550 Query 625 ATAGATTCTTGAACTGTCCATCGAGT-TTAGAGGTGGATAGGCGAATCAGCAATGCGCTT 683 ||||||||||||| ||||| |||||| || ||||| ||||| |||||||||| | Sbjct 551 ATAGATTCTTGAATTGTCCTTCGAGTCTT-GAGGTCGATAGAAGAATCAGCAA----C-- 603 Query 684 AGCGCTGTTGTGGATTCGTCAGAGGAGAATAAGGAGGAAGATATGGAGCGAACGATTAAC 743 ||||| |||| || | ||| ||||| ||||| || ||||| || || | Sbjct 604 -GCGCT-TTGT-GA----T-----GAG---AAGGAAGAAGACATTGAGCGTACAATCAGT 648 Query 744 GTTATTC-TAGGTagatgcaaagagatatcaatagagagtaagaa-ta-ac-aag-a-ag 797 |||| || |||| |||||||| | ||| || | |||||| ||||| | || ||| | || Sbjct 649 GTTA-TCTTAGGGAGATGCAAGGCGATTTCGACAGAGAGCAAGAACAAGACGAAGAAGAG 707 Query 798 -aagagagacataagcaagaa-CTCTGTCTCAT-ATCTTTTCAAGAAGATTTTTGTCTGC 854 ||||||||| | ||||| || |||||| || | ||||| |||||||||| |||||||| Sbjct 708 TAAGAGAGACTTGAGCAA-AACCTCTGTTTC-TCATCTTCTCAAGAAGATGTTTGTCTGT 765 Query 855 GCAGATGGGATT-TCTACAGCCCCAAGCCCTAGCTTGAGAGACACGCTTCAAGAATCAAG 913 |||| ||| || ||| ||| || ||||||||||||||||||||| |||||||| |||| Sbjct 766 ACAGA-GGGTTTCTCTCCAGTTCCTAGCCCTAGCTTGAGAGACACGTTTCAAGAAACAAG 824 Query 914 AATGGAGAAGTTGTTGAAG-ATGATGCTCCATAAGAAGATTAATGCTCAAGCCTCCTCGA 972 ||||||||||||| || || |||||||| || ||||| || || ||||| || || | Sbjct 825 AATGGAGAAGTTGCTG-AGAATGATGCTACACAAGAAAATAAACACTCAA-ACTTCTTTA 882 Query 973 AA-CCAACATCATTGACAACAAAGAGATACTTGCAAGACAAGAAACAGCTCTCACTGAAG 1031 || | ||||||| || | ||| | |||||||||||||||| |||| || || ||||| Sbjct 883 AAGCAAACATCA---ACGA-AAA-A-ATACTTGCAAGACAAGCAACAACTTTCTTTGAAG 936 Query 1032 AGTGAGGAAGAAGAAACTAGCGAAAGAAGAAGTAGTAGCGATGGATATAAATGGGTCAAA 1091 | ||||||||||| | | | | |||||||||||||||||| ||||||||||||| Sbjct 937 AATGAGGAAGAAG--A--A--G--A-AAGAAGTAGTAGCGATGGGGGTAAATGGGTCAAA 987 Query 1092 ACAGATTCTGATTTCATAGTTCTCGAGATATGA 1124 ||||||||||||||||| ||||| ||||| ||| Sbjct 988 ACAGATTCTGATTTCATTGTTCTTGAGATCTGA 1020 Score = 65.8 bits (35), Expect = 9e-10 Identities = 40/42 (95%), Gaps = 2/42 (5%) Strand=Plus/Plus Query 235 ACATGAAGTTCTTCGGGTGGATGCAGAACAAGCTTA-ATGGG 275 |||||||||||||||||||||||||||||||||| | ||||| Sbjct 161 ACATGAAGTTCTTCGGGTGGATGCAGAACAAGCT-ACATGGG 201 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 55268945495 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5