BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G17410.1
Length=795
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471946 jgi|Araly1|471946|fgenesh2_kg.1__1900__AT1G17410.1 1007 0.0
> Ahg471946 jgi|Araly1|471946|fgenesh2_kg.1__1900__AT1G17410.1
Length=712
Score = 1007 bits (545), Expect = 0.0
Identities = 662/718 (92%), Gaps = 10/718 (1%)
Strand=Plus/Plus
Query 32 AAGTCGACGTTAAACGCGCG-TTTCAGAGTTTTCCGGCAGGAGGAGCAAACTCGACGACA 90
|||||||||||| ||||||| ||| || |||| ||||| ||||||||||||| |||||
Sbjct 1 AAGTCGACGTTATACGCGCGTTTTAAGTGTTTCCCGGCTGGAGGAGCAAACT---CGACA 57
Query 91 TT--AGCTTCTCCGAACACAATTTTCCTCCGGCTTTCATAAATTTCGGGGTTACATCGTC 148
|| ||||||||||| ||||||||||||||||||||||| ||| |||| |||||||||||
Sbjct 58 TTAGAGCTTCTCCGACCACAATTTTCCTCCGGCTTTCAT-AATCTCGGAGTTACATCGTC 116
Query 149 CTAATTCGTCTGATAGGTTGCCGAATTTGTGTTCTCCGGTCAAGTCAATGTCAGGAATCA 208
||||||||||||||| || | |||||| |||| |||| ||||||||||||||||| |||
Sbjct 117 CTAATTCGTCTGATA-GTCACTGAATTTTTGTTTTCCGATCAAGTCAATGTCAGGATTCA 175
Query 209 CATATCAAATATTGTTCCTCCTCCTTCTCGCCTCTGTCTCCTTGTCGCCGGTCAGGTGTT 268
|||||||| || | |||||||| ||||||| |||| | ||||||||||||||||||||||
Sbjct 176 CATATCAACTAATCTTCCTCCTGCTTCTCGTCTCTATATCCTTGTCGCCGGTCAGGTGTT 235
Query 269 TAGGTTATGGAGCAAGTAGTGAAGAGAGAACATTGGCTATGATAAAGCCAGATGGAGTCT 328
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 236 TAGGTAATGGAGCAAGTAGTGAAGAGAGAACATTGGCTATGATAAAGCCAGATGGAGTCT 295
Query 329 CTGGTAACTATACTGAAGAAATCAAAACGA-TCGTCGTTGAGGCTGGTTTCAATATCGTC 387
|||||||||| ||||| ||||| |||| || | |||||||| ||| ||||||| ||||||
Sbjct 296 CTGGTAACTACACTGACGAAATTAAAA-GAATTGTCGTTGAAGCTAGTTTCAACATCGTC 354
Query 388 AAGGAGATGCTTACTCAGCTGGACAAGGAGACAGCTTCTGCGTTTTACGAGGAGCACTCA 447
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 355 AAGGAGATGCTTACTCAGCTGGACAAGGACACAGCTTCTGCGTTTTACGACGAGCACTCA 414
Query 448 TCGAGGAGCTTTTTTCCTCATCTTGTTACATACATGACGAGTGGTCCGGTGTTGGTGATG 507
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 415 TCAAGGAGCTTTTTTCCTCATCTTGTTACATACATGACAAGTGGTCCGGTGTTGGTGATG 474
Query 508 GTATTGGAGAAGCGAAATGCAGTTTCTGATTGGCGTGATTTAATCGGTCCAACAGATGCG 567
||||||||||||||||| || |||||||||||||||| ||||||||| ||||| ||||||
Sbjct 475 GTATTGGAGAAGCGAAACGCGGTTTCTGATTGGCGTGGTTTAATCGGGCCAACCGATGCG 534
Query 568 GAAAAGGCTAAGATATCTCACCCTCACAGCATCAGAGCATTATGTGGTAAGAACTCACAG 627
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 535 CAAAAGGCTAAGATATCTCACCCTCACAGCATCAGAGCATTTTGTGGTAAGAACTCACAA 594
Query 628 AAGAACTGTGTGCACGGCTCGGATTCAACATCGTCAGCTGAAAGAGAGATAAAGTTTTTC 687
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 595 AAGAACTGTGTGCACGGCTCGGATTCAACATCATCAGCTGAAAGAGAGATAAAGTTTTTC 654
Query 688 TTCAAGGATGTAGTTTCAGGTGACATTGCTACACAACAACATGACGAACTATAAGAAA 745
||||||||||| |||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 655 TTCAAGGATGTTGTTTCAGGTGACATTGCTTCGCAACAACATGACGAACTATAAGAAA 712
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29354646090
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5