BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G17420.1
Length=2957
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471947 jgi|Araly1|471947|fgenesh2_kg.1__1901__AT1G17420.1 4425 0.0
> Ahg471947 jgi|Araly1|471947|fgenesh2_kg.1__1901__AT1G17420.1
Length=2898
Score = 4425 bits (2396), Expect = 0.0
Identities = 2736/2903 (94%), Gaps = 12/2903 (0%)
Strand=Plus/Plus
Query 5 AACCAGAACGTTCATCTACCAACAAATCCTCAACTCCTT-CTTCTTCACT-AATAGTATA 62
||||||||||||||||||||||||||| ||||||||||| ||||||||| || ||||||
Sbjct 1 AACCAGAACGTTCATCTACCAACAAATTCTCAACTCCTTAATTCTTCACTAAACAGTATA 60
Query 63 CCACAAAACCTCAAAATTGTAATTTATTAGATTATCGTGATGGCCTTAGCTAAAGAGTTA 122
|||||||||||||| | | || |||||||||||||||||||||||||||||||||||||
Sbjct 61 CCACAAAACCTCAACACTAAAAATTATTAGATTATCGTGATGGCCTTAGCTAAAGAGTTA 120
Query 123 ATGGGTTATCCTCTCATCACAGAAAGGTCATCACTTGTCTCGTCGGCGTCGCATTTCAAG 182
|||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 121 ATGGGTTATCCTCTGATCACAGAAAGGTCATCACTTGTTTTGTCGGCGTCGCATTTCAAG 180
Query 183 AAGAGGACACAGTCAACACAGTTCTCGATCAACCCTTTTGACCGGAGACCAAGAAAAACC 242
|||||||||||| |||| || ||||||||||||||||||||||| |||||||||||||||
Sbjct 181 AAGAGGACACAGACAACGCAATTCTCGATCAACCCTTTTGACCGCAGACCAAGAAAAACC 240
Query 243 AAATCCGGCGTCGTTGCAGCCATCAGCGAGGATTTGGTCAAAACGCTGCGTTTTTCCACA 302
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 241 AAATCCGGCGTCGTTGCGGCCATCAGCGAAGATTTGGTCAAAACGCTGCGTTTTTCCACA 300
Query 303 ACGACCGGAGACAGAAAGAGCGAAGAGGAGGAGAAAGCGGCGGTGAAGTTCAAGGTGAGA 362
|| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 301 ACAACCGGAGACAGAAAGAGCGAAGAGGAAGAGAAAGCGGCGGTGAAATTCAAGGTGAGA 360
Query 363 GCTGTGGTTACTGTGAGGAACAAGAACAAGGAGGATTTGAAAGAGACTCTTGTTAAGCAT 422
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 361 GCTGTGGTTACTGTGAGGAACAAGAACAAGGAGGATTTAAAAGAGACTCTTGTTAAGCAT 420
Query 423 TTGGATGCTTTTGCTGATAAAATTGGTCGAAACATTGTCTTGGAGCTTATCAGCACCCAA 482
||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||
Sbjct 421 TTGGATGCTTTTGCTGATAAAATTGGTCGTAACATCGTCTTGGAGCTTATTAGCACCCAA 480
Query 483 CTTGATCCAAAAACGAAGTTGCCGAAGAAAAGCAATGCAGCAGTTTTAAAGGATTGGTCA 542
|||||||||||||||| |||||| ||||| || |||||||| ||||||||||||||||||
Sbjct 481 CTTGATCCAAAAACGAGGTTGCCAAAGAAGAGTAATGCAGCGGTTTTAAAGGATTGGTCA 540
Query 543 AAGAAATCGAAAACTAAGGCGGAGAGAGTTCACTATACGGCGGAGTTCACGGTGGATGCA 602
|||||||||||||| |||||||| ||||||||||| |||||||||||||||||||| |||
Sbjct 541 AAGAAATCGAAAACGAAGGCGGATAGAGTTCACTACACGGCGGAGTTCACGGTGGACGCA 600
Query 603 GCGTTTGGCTCGCCGGGAGCAATCACCGTCATGAATAAACACCAAAAAGAGTTTTTCTTG 662
|||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||||
Sbjct 601 GCGTTTGGCTCGCCGGGAGCCATCACCGTTATGAATAAACACCAGAAAGAGTTTTTCTTG 660
Query 663 GAGAGCATAACCATTGAAGGCTTCGCACTTGGTCCTGTTCACTTTCCATGCAATTCTTGG 722
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GAGAGCATAACCATCGAAGGCTTCGCACTTGGTCCTGTTCACTTTCCATGCAATTCTTGG 720
Query 723 GTTCAGTCTCAAAAAGATCACCCTGATAAACGAATTTTCTTCACTAATCAGCCGTATTTG 782
|||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 721 GTTCAGTCCCAAAAAGATCACCCTGAAAAACGAATCTTCTTCACTAATCAGCCGTATTTG 780
Query 783 CCGAATGAGACACCAAGCGGATTAAGAGTATTGAGGGAGAAAGAGTTGAAGAATCTACGA 842
||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct 781 CCGAATGAGACACCAGGCGGATTAAGAGTATTGAGGGAAAAAGAGTTGAAGAATCTACGA 840
Query 843 GGAGATGGAAGTGGAGTGAGAAAATTATCAGACAGAATTTACGACTTTGATGTTTACAAC 902
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 GGAGATGGGAGTGGAGTAAGAAAATTATCAGACAGAATTTACGACTTTGATGTTTACAAC 900
Query 903 GACCTTGGAAATCCCGACAAATCATCCGAGCTCTCTCGCCCCAAACTCGGTGGCAAAGAG 962
|||||||||||||||||||| || || || ||||||||||||||||| || ||| |||||
Sbjct 901 GACCTTGGAAATCCCGACAAGTCTTCTGAACTCTCTCGCCCCAAACTTGGCGGCCAAGAG 960
Query 963 GTTCCTTACCCTAGACGTTGTCGTACTGGTCGCCAATCAACAGTTTCTGATAAAGACGCG 1022
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 961 ATTCCTTACCCTAGACGTTGTCGTACTGGTCGCCAAACAACAGTTTCTGATAAAGAAGCG 1020
Query 1023 GAGAGCCGAGTAGAGAAGCCATTACCTATGTATGTGCCACGAGACGAGCAATTTGAAGAG 1082
||||||||||||||||||||| |||| ||||| |||||||||||||||||||| ||||||
Sbjct 1021 GAGAGCCGAGTAGAGAAGCCACTACCGATGTACGTGCCACGAGACGAGCAATTCGAAGAG 1080
Query 1083 TCGAAGCAGGACACTTTTGCTGCAGGGAGGCTAAAAGCAGTCTTACACCACCTAATTCCG 1142
|| || || |||||||| ||||||||||| |||||||| ||||| |||||||||||||||
Sbjct 1081 TCTAAACAAGACACTTTCGCTGCAGGGAGACTAAAAGCGGTCTTGCACCACCTAATTCCG 1140
Query 1143 TCGCTCAAAGCCAGTATTGTAGCTGAGGACTTTGCAGACTTCGGCGAGATCGATCGTCTT 1202
||||||||||| ||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 1141 TCGCTCAAAGCTAGTATTGTAGCTGAGGACTTTGCAGACTTCGGCGAAATCGATAGTCTC 1200
Query 1203 TATAAAGAAGGCTTGTTACTCAAGTTAGGGTTTCAAGATGACATCTTTAAGAAGTTTCCT 1262
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1201 TATAAAGAAGGCTTGTTACTCAAGTTAGGGTTTCAAGATGACATCTTTAAGAAGTTCCCT 1260
Query 1263 CTCCCTAAGGTCGTAGTTGATACCCTCCAAGAATCTACTAAAGGACTCCTCAAATACGAC 1322
| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 TTGCCTAAGGTCGTCGTTGATACCCTCCAAGAATCTACTAAAGGACTCCTCAAATACGAC 1320
Query 1323 ACTCCC-AAAATATTATCGAAGGATAAAAACGCATGGTTAAGAGATGACGAATTCGCACG 1381
|| ||| ||||||||||||||||||||||| |||||| ||||||||||||| ||||||||
Sbjct 1321 AC-CCCAAAAATATTATCGAAGGATAAAAATGCATGGCTAAGAGATGACGAGTTCGCACG 1379
Query 1382 TCAAGCCATAGCTGGAATCAATCCAGTGAACATTGAGAGAGTCAAGACTTTTCCACCGGT 1441
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1380 TCAAGCCATAGCTGGAATCAATCCAGTGAACATTGAGAGAGTCAAGACTTATCCACCGGT 1439
Query 1442 CAGCAATCTTGACCCCAAGATCTACGGTCCACAACACTCCGCTCTTACTGACGACCATAT 1501
||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||
Sbjct 1440 CAGCAATCTTGACCCCAAGATCTACGGTCCACAACACTCAGCTCTCACTCACGACCATAT 1499
Query 1502 CATTGGTCACCTCGACGGATTCTCCGTACAACAAGCGTTGGAAGAGAATAGATTGTATAT 1561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1500 CATTGGTCACCTCGACGGATTCTCCGTACAACAAGCGTTGGAAGAGAATAGATTGTATAT 1559
Query 1562 GTTGGATTACCATGACATATTCTTACCGTTCCTAGACCGGATTAATGCGCTAGACGGACG 1621
|||||||||||||||||||||||||||||||||||||||||| |||||| |||| |||||
Sbjct 1560 GTTGGATTACCATGACATATTCTTACCGTTCCTAGACCGGATCAATGCGGTAGATGGACG 1619
Query 1622 CAAAGCCTATGCTACTCGAACTATCTTCTTCTTGACTCGTCTAGGCACACTTAAGCCGGT 1681
|||||| |||||||||||||| || ||||||||||||||||| || ||||| ||||| ||
Sbjct 1620 CAAAGCTTATGCTACTCGAACCATTTTCTTCTTGACTCGTCTCGGTACACTGAAGCCTGT 1679
Query 1682 AGCCATTGAGCTAAGCCTCCCTCCCCATGGTCCAAAACATCGGTCCAAGCGTGTGCTTAC 1741
||||||||||||||||||||||||| |||| || ||||||||||||||||||||||||||
Sbjct 1680 AGCCATTGAGCTAAGCCTCCCTCCCAATGGCCCGAAACATCGGTCCAAGCGTGTGCTTAC 1739
Query 1742 ACCTCCAGTCGATGCAACCTCTAATTGGATGTGGCAGCTCGCTAAAGCCCACGTTAGTTC 1801
||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||
Sbjct 1740 ACCTCCAGTCGATGCAACCTCCAACTGGATGTGGCAACTCGCTAAAGCCCACGTTAGTTC 1799
Query 1802 TAACGATGCTGGTGTCCATCAGCTTGTCAATCACTGGTTACGGACACATGCATGCTTGGA 1861
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 1800 TAACGATGCTGGTGTCCATCAACTTGTCAATCACTGGTTACGGACTCATGCATGCTTGGA 1859
Query 1862 GCCATTTATATTAGCTGCACACAGGCAATTGAGCGCTATGCATCCCATATTCAAGCTACT 1921
||| |||||||||||||| || ||||| ||||||||||||||||| ||||||||||||||
Sbjct 1860 GCCTTTTATATTAGCTGCGCATAGGCAGTTGAGCGCTATGCATCCGATATTCAAGCTACT 1919
Query 1922 GGATCCACACATGAGATACACGTTGGAAATCAATGCTTTGGCTAGACAATCGTTGATCAG 1981
|||||| |||||||| |||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 1920 GGATCCGCACATGAGGTACACGTTGGAAATCAATGCATTGGCGAGACAATCGTTGATCAG 1979
Query 1982 TGCAGATGGTGTGATCGAAGGAGGCTTCACTGCTGGTGCATACGGCATGGAAATGAGTGC 2041
||||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||
Sbjct 1980 TGCAGATGGTGTGATCGAAGGAGGCTTCACTGCCGGCGCATACGGCATGGAAATGAGCGC 2039
Query 2042 CGCCGCATACAAAAGCAGCTGGCGGTTCGACATGGAAGGCCTCCCTGCCGATCTAATTCG 2101
|||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 2040 TGCCGCATATAAAAGCAGCTGGCGGTTCGACATGGAAGGCCTCCCCGCCGATCTCATTCG 2099
Query 2102 CAGAGGAATGGCAATTCCTGATGCAACACAACCACATGGTCTTAAACTCCTAATCGAAGA 2161
||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2100 CAGAGGAATAGCAATTCCTGATGCATCACAACCACATGGTCTTAAACTCCTAATCGAAGA 2159
Query 2162 CTATCCGTACGCCAACGACGGTCTTTTACTCTGGTCAGCAATCCAAACCTGGGTCCGAAC 2221
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||
Sbjct 2160 CTATCCGTACGCCAACGACGGTCTTTTACTCTGGTCCGCCATCCAAACCTGGGTCCGCAC 2219
Query 2222 CTATGTTGAACGCTACTATC-CAAACCCGAACCTTATCAAAACAGACTCTGAGCTCC-AA 2279
||| || ||||||||||| | ||||||||| ||| |||||||||||||||||||||| ||
Sbjct 2220 CTACGTGGAACGCTACTA-CTCAAACCCGAGCCTAATCAAAACAGACTCTGAGCTCCAAA 2278
Query 2280 TCTTGGTACTCAGAATCAATCAACGTCGGCCACGCTGACCTCCGCGACGCTGATTGGTGG 2339
| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2279 AC-TGGTACTCCGAATCAATCAACGTCGGCCACGCCGACCTCCGCGACGCTGATTGGTGG 2337
Query 2340 CCGGAGTTATCAACCGTCGACGACCTCGTGTCGATTCTAACCA-CTCTAATCTGGCTCGC 2398
|||||||||||||||||||||||||| ||||||||||| |||| || |||||||||| ||
Sbjct 2338 CCGGAGTTATCAACCGTCGACGACCTTGTGTCGATTCTCACCACCT-TAATCTGGCTAGC 2396
Query 2399 CTCTGCTCAACACGCCGCTCTAAACTTTGGACAATACCCTTACGGTGGCTACGTCCCAAA 2458
||| || |||||||||||| ||||||| ||||||||||| ||||| ||||||||||||||
Sbjct 2397 CTCAGCACAACACGCCGCTTTAAACTTCGGACAATACCCGTACGGCGGCTACGTCCCAAA 2456
Query 2459 CCGACCACCGTTGATGCGGCGGTTAATCCCCGACGAGTCGGATCCAGAGTACGCGAG-TT 2517
|||||| ||||||||||| ||||||||||| |||||||||||||||||||| ||||| ||
Sbjct 2457 CCGACCTCCGTTGATGCGACGGTTAATCCCGGACGAGTCGGATCCAGAGTATGCGAGCTT 2516
Query 2518 TCATCTCCCATCCGGAGAAGTATTACTTCTCGTCGATGCCAAGTTTGGCGCAGACTTCGA 2577
| ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2517 T-ATCTCTAATCCGGAGAAGTATTACTTCTCGTCGATGCCGAGTTTGGCGCAGACTTCGA 2575
Query 2578 AGTTTATGGCCGTGGTTGATACTTTGTCGACGCATTCGCCGGATGAGGAGTATATTGGAG 2637
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2576 AGTTTATGGCTGTGGTTGATACTTTGTCGACGCATTCGCCGGATGAGGAGTATATTGGGG 2635
Query 2638 AGAGACAACAGCCGTCGATTTGGACAGGAGATGCGGAGATTGTTGAAGCGTTTTATGGAT 2697
||||||||||||||||||||||||| |||||||| ||||| ||||| |||||||||||||
Sbjct 2636 AGAGACAACAGCCGTCGATTTGGACTGGAGATGCAGAGATCGTTGATGCGTTTTATGGAT 2695
Query 2698 TTGCGGCAGAGATCGGACGGATAGAGAAAGAGATTGAGAAAAGGAACGCTGATCCTGACC 2757
||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2696 TTGCGACGGAGATCGGACGGATAGAGAAAGAGATTGAGAAAAGGAACGCTGATCCTGACC 2755
Query 2758 GTAGAAATAGGTGTGGGGCTGGTGTTTTGCCTTATGAGTTGTTGGTTCCGAGTTCTGAGC 2817
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2756 GTAGAAATAGGTGTGGGGCTGGTGTTTTGCCTTATGAGTTGTTGGTTCCGAGTTCTGAGC 2815
Query 2818 CTGGTGTTACGTGTAGAGGTGTACCTAATAGTGTATCTATATAATTAAGAAGGAAATTAT 2877
||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 2816 CTGGTGTTACGTGTAGAGGTGTACCTAATAGTGTATCTATATAATTACGAACGAAATTAT 2875
Query 2878 TTATAAGAAGTAAATGTAGAAAA 2900
|||| |||||||||||| ||||
Sbjct 2876 TTATGGGAAGTAAATGTAAAAAA 2898
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 111642508095
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5