BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G17430.1
Length=1136
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471948 jgi|Araly1|471948|fgenesh2_kg.1__1902__AT1G17430.1 1570 0.0
Ahg908871 jgi|Araly1|908871|Al_scaffold_0002_1952 660 0.0
> Ahg471948 jgi|Araly1|471948|fgenesh2_kg.1__1902__AT1G17430.1
Length=1035
Score = 1570 bits (850), Expect = 0.0
Identities = 976/1037 (94%), Gaps = 7/1037 (1%)
Strand=Plus/Plus
Query 33 TTTTCTTAAAAATGGCGTCCATGAAACACGTTCATCTTTTCCGTCGTTATCTCTCAATCG 92
||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 1 TTTTCTTGAAAATGGCGTCCATGAAACACGTTCATCTCTTCCGTCGTTACCTCTCAATCG 60
Query 93 TTTTCACTCTCTTTCAACGCTTAATTTCATGTTTCTTCGATTTTCCGATACTGATCAAAA 152
|| |||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTCTCACTCTCTTTCAAAGCCTAATTTCATGTTTCTTCGATTTTCCGATACTGATCAAAA 120
Query 153 TCGCAGATTCGTTCTTATCTCTGTATTTCTTAGTTTTCTGCGATCTCCGACCCGTAACCG 212
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 121 TCGCAGATTCATTCTTATCTCTGTATTTCTTAGTTTTATGCGATCTCCGACCCGTAACCG 180
Query 213 TCGATCTAGACGACGGAGAAACCACAGTCCATTTCTGGATCTCCGGCCACCGTAGAATCT 272
| ||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||
Sbjct 181 TTGATCTAGACGACGGAGAAACCACAGTCAAATTCTGGATCTCCGGCCATCGTAGAATCT 240
Query 273 CTCGGCAGAATCTCGTCATGCTCCATGGATACGGAGGAAACTCCAAATGGCAATTCGTTC 332
| || | |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 241 CCCGTCCGAATCTCGTCATGCTCCACGGATACGGAGGAAACTCCAAATGGCAATTCGTTC 300
Query 333 ATCAAGTCTCGGATCTCTCGAAATCGTTTAATCTCTTCATCCCCGATTTGGTCTTCTTCG 392
||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 301 ATCAAATCTCCGATCTCTCTAAATCGTTTAATCTCTTCATCCCCGATTTGGTCTTCTTCG 360
Query 393 GAAAATCGTATTCGAAGAATAGAGATCGGAGCGTTGAGATTCAGGCGAGGAGCGTCGTCG 452
||||||| |||||||||||| |||||||||| |||||||||||||||||||| ||||||
Sbjct 361 GAAAATCATATTCGAAGAATCCAGATCGGAGCATTGAGATTCAGGCGAGGAGCATCGTCG 420
Query 453 GAGGATTGAAGAAACTGGGATGCGTTGAAGGAGGAGGAGGA---ATATCGATTTATTCGA 509
||||||||||||| ||||| ||||| ||||||||||||||| || ||| |||||||||
Sbjct 421 GAGGATTGAAGAAGCTGGGTTGCGTCGAAGGAGGAGGAGGAGGGATCTCGGTTTATTCGA 480
Query 510 TTAGTTACGGTGGATTTGTGGCGTATAAAATGGCGGAGATTTGGCCGGCGATGGTTGAGA 569
|||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 481 TTAGCTACGGTGGATTTGTGGCGTATAAAATGGCGGAGATTTGGCCGGAGATGGTTGAGA 540
Query 570 AATTGGTGATTGTGAGTAGTGGAGTGGGATTTACACAGCAGCAGAAGACGGCAGAATTGA 629
|| ||||||||||||| ||||||||||||||||||||||| ||||||||||| || ||||
Sbjct 541 AACTGGTGATTGTGAGCAGTGGAGTGGGATTTACACAGCAACAGAAGACGGCGGAGTTGA 600
Query 630 AAAAACACGGCGGAGATTGTTCGAAGATT-TTAGTTCCGAAAACTCCGATGGATCTACGG 688
||||||||||||||||||||||||||||| || |||||||||||||| | ||||||||||
Sbjct 601 AAAAACACGGCGGAGATTGTTCGAAGATTCTT-GTTCCGAAAACTCCAACGGATCTACGG 659
Query 689 TTGCTGATTAAGATATCTATGAATACTGGTTTAACGTTCGTCGATTGGGTTCCAGACTTT 748
|||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 660 TTGCTGATTAAGATCTCTATGAATACCGGTTTAACGTTCGTCGATTGGGTTCCAGA-TTT 718
Query 749 T-TCCTTTCCCAATTCATCGCTGTAATGTATGAGAAAAATCGGCAGGAGCTTCTTGAGCT 807
| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 TGTCCTCTCCCAATTCATCGCTGTAATGTATGAGAAAAATCGGCAGGAGCTTCTTGAGCT 778
Query 808 AGCTAAGAATTTGTTGGAACGAGAGGAGGAACCAGAATTGCCTGTAATATCCCAGAAAAC 867
||||||||||||||||||| |||| |||||||||||||||||||||||||| |||| |||
Sbjct 779 AGCTAAGAATTTGTTGGAAAGAGAAGAGGAACCAGAATTGCCTGTAATATCGCAGAGAAC 838
Query 868 GTTAATCGTTTGGGGAGACAAGGACAAGGTGTTTCCCTTGGAGCATGCTTATCGGCTGCA 927
||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 839 ATTAATCGTTTGGGGAGACAAGGACAAGGTCTTTCCATTGGAGCATGCTTATCGGCTGCA 898
Query 928 AAGGCATTTACAGAGTTCAAGATTAGAGATAATAAAGGAAACAGGACACGCTGTTAACAT 987
|||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||
Sbjct 899 AAGGCATTTACAGAGTTCCAGATTAGAGATAATAAAGGAAACTGGTCACGCTGTTAACAT 958
Query 988 TGAAGCACCAACTACTCTTAATAATTTTATTACTTCGTTTGTCTTAAGTGCTTGATTTCT 1047
||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||
Sbjct 959 TGAAGCACCAACTACTCTTAATAATTTAATTACTTCGTTTGTTTTAAGTGTTTGATTTCT 1018
Query 1048 ATTTTTGTATATACTTC 1064
|||||||||||||||||
Sbjct 1019 ATTTTTGTATATACTTC 1035
> Ahg908871 jgi|Araly1|908871|Al_scaffold_0002_1952
Length=996
Score = 660 bits (357), Expect = 0.0
Identities = 743/925 (80%), Gaps = 44/925 (5%)
Strand=Plus/Plus
Query 128 TTCGATTTTCCGATACTGATCAAAATCGCAGATTCGTTCTTATCTCTGTATTTCTTAGTT 187
||||||| ||||| || |||||| |||| ||| ||||||||||| | |||||| || |
Sbjct 97 TTCGATTACCCGATCCTAATCAAACTCGCTGATACGTTCTTATCTTTATATTTCCTAATC 156
Query 188 TTCTGCGATCTCCGACCCGTAACCGTCGATCTAGACGACGGAGAAACCACAGTCCATTTC 247
|||||||||||||| || |||||||||||| || |||| |||||||||||| | ||||||
Sbjct 157 TTCTGCGATCTCCGTCCAGTAACCGTCGATTTAAACGATGGAGAAACCACATTACATTTC 216
Query 248 TGGATCTCCGGCCACCGTAGAATC-TCTCG-GCAGAATCTCGTCATGCTCCATGGATACG 305
||||||||||||||||||| || | | || || || ||| ||||||| || || ||||
Sbjct 217 TGGATCTCCGGCCACCGTAAAACCAAC-CGCCCA-AACCTCCTCATGCTACACGGTTACG 274
Query 306 GAGGAAACTCCAAATGGCAATTCGTTCATCAAGTCTCGGATCTCTCGAAATCGTTTAATC 365
||||||| || ||||||||||| |||||||||| || ||||| ||||||||||||||||
Sbjct 275 GAGGAAATTCGAAATGGCAATTTATTCATCAAGTTTCAGATCTATCGAAATCGTTTAATC 334
Query 366 TCTTCATCCCCGATTTGGTCTTCTTCGGAAAATCGTATTCGAAGAATAGAGATCGGAGCG 425
|||| ||||||||| | | |||||||| |||||||| ||||| |||| ||||||||||
Sbjct 335 TCTTTATCCCCGATCTCATGTTCTTCGGGAAATCGTACTCGAAAAATACCGATCGGAGCG 394
Query 426 TTGAGATTCAGGCGAGGAGCGTCGTCGGAGGATTGAAGAAACTGGGATGCGTTGAAGGAG 485
| ||| ||||||||||||| |||||||||| ||||||| | || || | || | |
Sbjct 395 TCGAGTTTCAGGCGAGGAGTATCGTCGGAGGTTTGAAGAGGTTAGGCTGTGGTG-A--CG 451
Query 486 GAGGAGGAATATCGATTTATTCGATTAGTTACGGTGGATTTGTGGCGTATAAAATGGCGG 545
|| || | ||| |||| || ||||||||||| ||||| || |||||| || |||
Sbjct 452 GA-GA--TTTGTCGGTTTACTCTATTAGTTACGGAGGATTCGTCGCGTATCGGATTGCGA 508
Query 546 AGATTTGGCCGGCGATGGTTGAGAAATTGGTGATTGTGAGTAGTGGAG-TGGGATTTACA 604
|||||||||||| ||||||||||||| ||||||||||||||||||||| |||| ||||||
Sbjct 509 AGATTTGGCCGGAGATGGTTGAGAAACTGGTGATTGTGAGTAGTGGAGTTGGG-TTTACA 567
Query 605 CAGCAGCAGAAGACGGCAGA-ATTGAAAAAACACGGCGGAGATTGT-TCGAAGATT-TTA 661
|| ||||| |||| | | || | ||||||||||||||||||| ||| ||| ||||| ||
Sbjct 568 CAACAGCAAAAGATGACGGAGA-TGAAAAAACACGGCGGAGA-TGTATCGGAGATTCTT- 624
Query 662 GTTCCGA-AAACTCCGATG-GATCTACGGTTGCTGA-TTAAGATATCTATGAATACTGGT 718
||||||| || ||||| | ||||| |||||| | | ||| | | || |||||||| |||
Sbjct 625 GTTCCGAGTAA-TCCGA-GAGATCTCCGGTTG-TTAGTTAGGGTTTCGATGAATACAGGT 681
Query 719 TTAACG-TTCGTCGATTGGGTTCCAGACTTT-TTCCTTTCCCAATTCATCGCTGTAATGT 776
| | | ||| | || || |||||||| ||| |||| ||||||||||||||
Sbjct 682 ATCAGGTTTC-TTGACTGTGTTCCAGA-TTTCATCCTCTCCCAATTCATCGC-------- 731
Query 777 ATGAGAAAAATCGGCAGGAGCTTCTTGAGCTAGCTAAGAATTTGTTGGAACGAGAGGAGG 836
| | ||||||||| || ||| |||| |||||||||||||| ||||| |||| ||||
Sbjct 732 -T---ACAAATCGGCAAGAACTTGTTGATTTAGCTAAGAATTTGCTGGAAAGAGAAGAGG 787
Query 837 AACCAGAATTGCCTGTAATATCCCAGAAAACGTTAATCGTTTGGGGAGACAAGGACAAGG 896
| ||||| || || |||||| ||||||||||||||||||||||| || ||||| || |
Sbjct 788 AGCCAGATTTTTTTGCAATATCACAGAAAACGTTAATCGTTTGGGGTGATAAGGATAATG 847
Query 897 TGTTTCCCTTGGAGCATGCTTATCGGCTGCAAAGGCATTT-ACAGAGTTCAAGATTAGAG 955
|||||||||||||||||| || || ||||||||||| || | ||| || ||||||
Sbjct 848 TGTTTCCCTTGGAGCATGGACGGCGTCTTCAAAGGCATTTGCCA-AATTCGAGTTTAGAG 906
Query 956 ATAATAAAGGAAACAGGACACGCTGTTAACATTGAAGCACCAACTACTCTTAATAATTTT 1015
|| | ||||||| ||||| | ||| ||||||||||||||||||||||||||||||||
Sbjct 907 GTATTGAAGGAAATTGGACATGGTGTGAACATTGAAGCACCAACTACTCTTAATAATTTG 966
Query 1016 ATTA-CTTCGTTTGTCTTAAGTGCT 1039
|||| || ||||||| ||| |||||
Sbjct 967 ATTATCT-CGTTTGTTTTAGGTGCT 990
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42354560787
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5