BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G17455.1
Length=810
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471952 jgi|Araly1|471952|fgenesh2_kg.1__1906__AT1G17455.1 913 0.0
> Ahg471952 jgi|Araly1|471952|fgenesh2_kg.1__1906__AT1G17455.1
Length=747
Score = 913 bits (494), Expect = 0.0
Identities = 695/779 (89%), Gaps = 65/779 (8%)
Strand=Plus/Plus
Query 42 ATTAGCTTCGCTCAAATATCTCTGTCTCAAAAGACAAGTAGATTCCttttt-tttACAGT 100
||||| || |||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 1 ATTAGGTTGGCTCAAATATCTCTGTCTCAAAAGACAAGTAGATTCCTTTTTATTT--A-- 56
Query 101 ATCCAATAATTTG-TA--AT--CATATAAATAATCGGTGAAAAAGAAGGATTCTTTGTTT 155
| ||| ||| ||| || || | ||||||| ||||||||||||||||||||||||||||
Sbjct 57 A-CCAGTAA-TTGTTATCATACCCTATAAATTATCGGTGAAAAAGAAGGATTCTTTGTTT 114
Query 156 GTTTCCCGAGAAAATATCCTCGATTTCCATCTCCTATCTGTCATCGGAG--------CTT 207
|||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 115 GTTTCCCGAGAAAATAAACTCGATTTCCATCTCCTATCTGTCATCGGAGCTTTTTTCCTT 174
Query 208 TCTACTTC-C---G-AAGG-A-G--TAAAGGATCAATCAAGAGTTTGATCTT-GTTAGAA 257
|||||||| | | |||| | | |||| ||||| |||||||||||||||| ||| |||
Sbjct 175 TCTACTTCACAAGGTAAGGAAGGAATAAAAGATCAGTCAAGAGTTTGATCTTGGTT-GAA 233
Query 258 TAGCCGATAATGGAAGGAGATGTGTTGTCAGGATTTGGAGACAGACACAATATGGATGGG 317
| |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 234 AAACCGAGAATGGAAGGCGATGTGTTGTCAGGATTTGGAGACAGACACAATATGGATGGG 293
Query 318 AAATTGTTGCAGAGTTTCCAGAAGAGCTTTGTGGATGTTCAAGACATTTTGGACCAAAAC 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 294 AAATTGTTGCAGAGTTTCCAGAAGAGCTTTGTGGATGTTCAAGACATTTTGGACCAAAAC 353
Query 378 CGATTATTGATCAACGAGATCAATCAGAACCATGAATCGAAACAACCAGATAACTTGGGT 437
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 354 CGATTATTGATCAACGAGATCAATCAGAACCATGAATCGAAACAACCCGATAACTTGGGT 413
Query 438 CGAAACGTGGGGTTGATCAAAGAGCTCAACAACAATATCAGAAGAGTAGCTAGCCTTTAT 497
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 414 CGAAACGTGGGGTTGATCAAAGAGCTCAACAACAATATCAGAAGAGTAGCTAGCCTTTAC 473
Query 498 GGTGATCTCTCTCATTCTTTTGCAAGATCAGTGGATGCTTCATCAGAAGGTGAATCTAGT 557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 474 GGTGATCTCTCTCATTCTTTTGCAAGATCAGTGGATGCTTCATCAGAAGGTGAATCTAGT 533
Query 558 GGAACTTTGAAATCTGATGGGAAAGCTAACCAGAAGAGATTTAGATCCGGTTAGTATTGT 617
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 GGAACTTTGAAATCTGATGGGAAAGCTAACCAGAAGAGATTTAGATCCGGTTAGTATTGT 593
Query 618 AACCAAGAGGTCCAAGACCATCAAAGTTGATTATCATAGATTCATATTCAGATTCAGAGC 677
|||||||| ||| |||||||| ||||||||||||||||||||||| | |
Sbjct 594 AACCAAGA---CCA------TCAAAGTTTATTATCATAGATTCATATTCAGA----G--C 638
Query 678 TAATTGATTGAGGAGAAAGGAGAAAGGAGAGTTTTACAAATGTAATATCTCTATTGAAAT 737
||||||||||| || | ||||| | ||||||||||||||||||||| |||||||
Sbjct 639 TAATTGATTGACGA-A--GGAGA--G-----TTTTACAAATGTAATATCTCTGTTGAAAT 688
Query 738 GA---TTAAGAGTCTTTACAA---GAA-A--CTTGTTGTAAAGTTTACACATTTCGGTT 787
|| || ||||||||||||| ||| | ||||||||||||||||||||||||||||
Sbjct 689 GAAAGTTGAGAGTCTTTACAAATTGAATAAACTTGTTGTAAAGTTTACACATTTCGGTT 747
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29926489845
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5