BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G17460.2
Length=2234
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471953 jgi|Araly1|471953|fgenesh2_kg.1__1907__AT1G17460.1 2119 0.0
> Ahg471953 jgi|Araly1|471953|fgenesh2_kg.1__1907__AT1G17460.1
Length=2082
Score = 2119 bits (1147), Expect = 0.0
Identities = 1441/1580 (91%), Gaps = 31/1580 (2%)
Strand=Plus/Plus
Query 544 GGCTTCTTTCAGTCGGAAACTGCAGGACCGTATACAGAAAATTTGAACTCTCGACATGAG 603
||||| ||||||||||||||||||| | | |||||||||||| |||| |||| |||||||
Sbjct 485 GGCTTATTTCAGTCGGAAACTGCAGAAGCATATACAGAAAATATGAATTCTCAACATGAG 544
Query 604 TCTAAAGAGGAATTGATGAATGGATCTCAGATGCTTTTTGTTCTTCCGGATACCAAATTT 663
|||||||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||
Sbjct 545 TCTAAAGAGGAATTGATGTATGGAACTCAGATGCTTTTTGCTCTTCCGGATACCAAATTT 604
Query 664 CAGATTTCTACTGAGCTGTCTGGGAATGTGGAGCTAGTCCCATCCAAAGTTTTGCTGCAG 723
|| ||||||| ||||||| ||||||||||||||| ||||| |||| |||||||||||| |
Sbjct 605 CAAATTTCTAATGAGCTGCCTGGGAATGTGGAGCAAGTCCAATCCGAAGTTTTGCTGCCG 664
Query 724 GAACCAATTCTTTTTTCATCAAATGGATGCAGTATTAATCAATCTACGGATGTCTTAAAT 783
|||||||||||||||||||||||| |||||||||| |||||||||||||||| |||| ||
Sbjct 665 GAACCAATTCTTTTTTCATCAAATCGATGCAGTATGAATCAATCTACGGATGACTTATAT 724
Query 784 GCTAC----AG--CT--AG-TCCTAAAGAACCTGCATTGTCAACTGCTGCCTCAAAACCT 834
||||| || || || ||||||||| |||||||||||||||||||| | ||||||
Sbjct 725 GCTACGGGTAGTCCTAAAGAACCTAAAGAAGCTGCATTGTCAACTGCTGCCCCGAAACCT 784
Query 835 GATTTTTCTAGAGTACCAGGCGAGATAAGCTTGGCTAATCTTTCAATTAAAGAATTACAA 894
|| ||||||||||| ||||||||||| |||||| |||||||||||||| || |||||||
Sbjct 785 GAAGTTTCTAGAGTAGCAGGCGAGATATGCTTGGATAATCTTTCAATTAGAGCATTACAA 844
Query 895 GAAACTTTCAGAGCCACGTTTGGTCGTGAAACTACTT-CTAAGGACAAACGATGGCTCAA 953
||||| | ||| |||||||||||||| |||||||||| | |||||||| |||||||||||
Sbjct 845 GAAACATCCAGGGCCACGTTTGGTCGCGAAACTACTTGC-AAGGACAATCGATGGCTCAA 903
Query 954 AAGAAGAATCAAAATGGGACTGATTAATTCATGTGTAGTTCCAACAACTACCCTGACAAT 1013
||| ||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 904 AAGGAGAATCACAATGGGACTGATTAATTCATGTGTAGTTCCAACAACTAACCTGACAAT 963
Query 1014 TAATGATAGCAAACTGATTGGTGGAGATCAAGATGCAATTGATGCTTTTAGCAAGGGTAC 1073
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 964 TAATGATAACAAACTGATTGGTGGAGATCAAGATGCAATTGATGCTTTTAGCAAGGATAC 1023
Query 1074 AGTAGATGAAGAAACAGCTACTGAAAGCATAGATACACCAGCTAGTCCTGACGGCATAAA 1133
| |||||||||||| ||||| |||||||| |||||||||| ||||||||||| |||||||
Sbjct 1024 ATTAGATGAAGAAAGAGCTATTGAAAGCAAAGATACACCATCTAGTCCTGACTGCATAAA 1083
Query 1134 GGGGCATTCAAATGATTTTGGGCATAGTCCTGTTGAAACTTTTGTGGACCATTATTCTGG 1193
|||||||| | ||||||||||||||| | |||||||||||||||||||| ||||||||||
Sbjct 1084 GGGGCATTTAGATGATTTTGGGCATACTTCTGTTGAAACTTTTGTGGACTATTATTCTGG 1143
Query 1194 AAACGAAGATTTTGAAGGTGAAGATGGGTCTGCAAAAAGAGTGAGGAAGCCTACAAGGAG 1253
||||||||||||||| |||||| || |||||||||| ||||| |||||||||||||||||
Sbjct 1144 AAACGAAGATTTTGATGGTGAACATAGGTCTGCAAAGAGAGTTAGGAAGCCTACAAGGAG 1203
Query 1254 ATATATTGAAGAAAC--C---AA----TGAAAAACAACAAATTGACGGGTCAATGATCCC 1304
|||||||| |||||| | || ||||| |||||||| ||||| ||||||||||||
Sbjct 1204 ATATATTGTAGAAACTTCAGAAACCGGTGAAAGACAACAAAGTGACGAGTCAATGATCCC 1263
Query 1305 TTCAAAAGATCCA-AGCTCTATTCAAGCCGTTTCTTCAGAAGGGAGAGTTGTTGTCACCA 1363
||||||||| || ||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct 1264 ATCAAAAGAT-CAGAGCTCTATTCAAGCCGTTTCTTCAGGAGGGGGAGTTGTTGTCACCA 1322
Query 1364 GGATGGTATCCCTTGCTGGTTCCAGAATTCAGGTTCCCTATGTTTCTCATGTAAGGAGAA 1423
||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 1323 GGATGGTATCCCTAGCTGGTTCAAGAATTCAGGTTCCCTATGTTTCTCATGTAAGAAGAA 1382
Query 1424 GTCGTCCAAGAGAAAACATAATGGCTCTTGGGGAATTTCGTTCTAAGTCATGGGAGGTGA 1483
| |||||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||
Sbjct 1383 GCCGTCCAAGAGAAAACATAATGGCTCTCGGGGAATTTCATTCCAAGTCATGGGAGGTGA 1442
Query 1484 AAGCTGCTCCAGAGGAGGGTAACCTGAATCTAAGCCCACCTCAGTTGAGCAATGATGTGA 1543
||||| ||||||| ||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 1443 AAGCTACTCCAGACAAGGGTAACCTGAATCTAAGCCCATCTCAGTTGAACAATGATGTGA 1502
Query 1544 ACCGAGTTCCAGGTGTCAAATCTGCATCTAGATGT-GTCCAGAAAG-A--AAGTGACAAA 1599
||||||||||||||||||||||||| ||||| | |||||||||| | ||| |||||
Sbjct 1503 ACCGAGTTCCAGGTGTCAAATCTGCGCCTAGA-CTCGTCCAGAAAGAAGTAAGCGACAAG 1561
Query 1600 GACCATTTAAAACCAATTTTCACTGATGTGGATCAAGAGATGATGGAGCCAGAGCTCTTA 1659
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1562 GACCATTTAAAACCAATTTTCACTGATGTGGATCAAGACATGATGGAGCCAGAGCTCTTA 1621
Query 1660 GACTCATCTGGAGATAGCTCAGATGATAATTTCGTTGATGCACCAATCACGCAAAGTGCA 1719
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 1622 GACTCATCTGGAGATAGCTCAGATGATAATTGCGTTGATGTACCAATCACGCAAAGTGCA 1681
Query 1720 AGTGGAAGGAAGCTTCATCGAGCTTGGACTATCTCTGAAGTTGAAAAACTAGTCGAAGGT 1779
| | |||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 1682 ATTAGAAGGAAGCTTCATCGAGCTTGGAATGTCTCTGAAGTTGAAAAACTAGTCGAAGGT 1741
Query 1780 GTGTCCAAATATGGAGTAGGGAAATGGACTGAGATCAAAAAGCTTTCATTTTCACCATAC 1839
||||||||||||||||||||||||||| |||||||||||| ||||||||| |||||||||
Sbjct 1742 GTGTCCAAATATGGAGTAGGGAAATGGTCTGAGATCAAAAGGCTTTCATTCTCACCATAC 1801
Query 1840 ACGCATCGTACCACTGTGGATCTCAAGGACAAATGGCGAAATCTACAAAAAGCAAGTTCT 1899
|| ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1802 ACACATCGTACCTCTGTGGATCTCAAGGACAAATGGCGAAATTTACAAAAAGCAAGTTCT 1861
Query 1900 TCAAACAGAATGGAAGGAGGTCTGAAGAAACACGGGTCGATGGCCATTCCTACTCACATT 1959
||||||||||||| ||||||||||||||||||||| |||||||| ||||||| |||||||
Sbjct 1862 TCAAACAGAATGGGAGGAGGTCTGAAGAAACACGGATCGATGGCTATTCCTAGTCACATT 1921
Query 1960 ATGTTGCAGGTAAGAGAGCTTGCTCAAAAACAATCACCGATTTCACGTGTAGTGAGCAAG 2019
|||||||||||||||||||||||||| ||||||||||| ||||||| ||||| ||||||
Sbjct 1922 ATGTTGCAGGTAAGAGAGCTTGCTCAGAAACAATCACCAATTTCACCTGTAGAAAGCAAG 1981
Query 2020 GCTAGAGTGGTGAAGAGATCGAGATCAAGAAACGGTTTCTTGTAGCGTTTCTACT-CTCG 2078
|||||||||||||||||||| ||||||||||||||||||||||||||||| | | ||||
Sbjct 1982 GCTAGAGTGGTGAAGAGATCAAGATCAAGAAACGGTTTCTTGTAGCGTTTATTTTTCTCG 2041
Query 2079 TATAAATTT---GTAGTTTT 2095
||||||||| ||||||||
Sbjct 2042 TATAAATTTTTTGTAGTTTT 2061
Score = 641 bits (347), Expect = 0.0
Identities = 445/491 (91%), Gaps = 11/491 (2%)
Strand=Plus/Plus
Query 1 CAAAACaaaaaaaaaTAAAGCAGAACAAAAAAGTTTGC-AAATATCCAAGGTTTTTAGCT 59
|||||||||||||| ||||||||||||||||||||| | |||| |||||| ||||| |||
Sbjct 1 CAAAACAAAAAAAATTAAAGCAGAACAAAAAAGTTT-CTAAATTTCCAAGCTTTTT-GCT 58
Query 60 TAGTCAAGAAGCCTCTCCTCCGAGATTTCTCGCCGATGAAACTACGAGCTCACTGGAAAG 119
||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 59 TAGTCAAGAAGCCTCTCCTCCGAGAACTCTCGCCGATGAAACAACGAGCTCACTGGAAAG 118
Query 120 TCT--GAtttttttCTTCTCCGTTCCCGTTCTACTTTCTCTGTTGCATTTGGTAGGTTA- 176
||| | |||| |||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 119 TCTAAAACTTTTGGCTTCCCCGTTCGCGTTCTACTTTCTCTGTTGCATTTGGTAGGTTAG 178
Query 177 AAAT-AGGGTAACAATGTTTGGAAATGTGAAAGACTATGGAGAGACGTTTCAAGACAGTA 235
| | | || | ||||||||||||||||| ||| ||||||||| | ||||||||||||||
Sbjct 179 ACTTCA-GG-AGCAATGTTTGGAAATGTGGAAGGCTATGGAGATATGTTTCAAGACAGTA 236
Query 236 TTTTTCAGACAAGAAACGGATCACTTTCCTCAACAAATCAAATTGGAAACCCTGTTACGT 295
||||||||||||||| ||| |||||||| |||||||||||||||||||||| |||| |||
Sbjct 237 TTTTTCAGACAAGAAGCGGTTCACTTTCTTCAACAAATCAAATTGGAAACCGTGTTGCGT 296
Query 296 ACAAGCTTGTGCGGGTTGCAGGCGACGGGAGTCTAGTTCCTGCAACTGATGAAGAGATGT 355
|||||||||||||||||||||| || |||| |||||||||||||||||||||||| ||||
Sbjct 297 ACAAGCTTGTGCGGGTTGCAGGAGATGGGACTCTAGTTCCTGCAACTGATGAAGAAATGT 356
Query 356 TGGAGGTCAAGAATTTGCTTGAGAAAAACGAGCAAGATATGCCTGTTTTACCAGATCCTA 415
|| |||||||| ||||||||||||| ||||||| |||||||||||||||||||| ||||
Sbjct 357 TGAAGGTCAAGGATTTGCTTGAGAACAACGAGCCTGATATGCCTGTTTTACCAGAGCCTA 416
Query 416 TACAAACTGAGGAA-TACATTCCCGATGAAGGTTCACCTTCTCAGTTTCTGCAGCTAGAA 474
|||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 TACAAACTGA-GAAGTACATTCCCGATGAAGGTTCACCTTCTCAGTTTCTGCAGCTAGAA 475
Query 475 AATTTTGAAGG 485
|| ||||||||
Sbjct 476 AACTTTGAAGG 486
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84103260960
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5