BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G17480.1
Length=1464
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471956 jgi|Araly1|471956|fgenesh2_kg.1__1910__AT1G17480.1 1871 0.0
Ahg476404 jgi|Araly1|476404|fgenesh2_kg.2__1534__AT1G72670.1 115 9e-25
> Ahg471956 jgi|Araly1|471956|fgenesh2_kg.1__1910__AT1G17480.1
Length=1251
Score = 1871 bits (1013), Expect = 0.0
Identities = 1156/1223 (95%), Gaps = 18/1223 (1%)
Strand=Plus/Plus
Query 1 CACAACCAAATTCCCAGAAACAATCTTTTTGCTTTTCCCACATTTCAAGCTCCAAAGCTT 60
||||| |||||||||||||||||||||| ||||||||||||||| | ||||| |||||||
Sbjct 1 CACAAGCAAATTCCCAGAAACAATCTTTCTGCTTTTCCCACATTGC-AGCTCTAAAGCTT 59
Query 61 CGAATTTTTGAATCAATAGCTTCCGAAGTTGTGAT-TTTTGTAGAATTCGAAAACCAAGG 119
||||||||||||||||||||||| ||||||||||| |||||| | | ||
Sbjct 60 CGAATTTTTGAATCAATAGCTTCTGAAGTTGTGATCTTTTGT---A---G--------GG 105
Query 120 TCTCGATTTGAGAAGATGGGTGGGTCAGGAAATTGGATTAGATCACTGATATCTAACAGA 179
| ||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 106 TTTCGATTTGAGAAGATGGGTGGGTCAGGAAATTGGATTAGATCACTAATATCTCACAGA 165
Query 180 AAACCCGTAAATGATCAGCAGGAGAAGTTAAGTGATAAGAGCAGCAAGAAGAAATGGAAG 239
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 166 AAACCAGTAAATGATCAGCAGGAGAAGTTAAGTGAGAAGAGCAGCAAGAAGAAATGGAAG 225
Query 240 CTGTGGAGGATTTCATCGGAGAGCTT-AGCATCTTCTTCTTTCAAGAGCCGAGGAAGCTA 298
|| |||||||| ||||| |||||||| | |||||||||||||||||||||||||||||||
Sbjct 226 CTTTGGAGGATCTCATCAGAGAGCTTCA-CATCTTCTTCTTTCAAGAGCCGAGGAAGCTA 284
Query 299 TGCAGCTTCTTCGTTAGGTTCAGAGCTACCGTCTTTCTCGGCTGACGAGGCTTTTACTAC 358
||||||||||||||| || ||||||| |||||||||||||||||||||| ||||||||||
Sbjct 285 TGCAGCTTCTTCGTTTGGCTCAGAGCCACCGTCTTTCTCGGCTGACGAGACTTTTACTAC 344
Query 359 GGCCATGGCAGCACTCATTCGAGCTCCTCCTAGGGATTTTTTGATGGTTAAGAGAGAATG 418
||||||||||| ||||||||||||||||| | ||||||||||||||||||| |||||||
Sbjct 345 TGCCATGGCAGCTCTCATTCGAGCTCCTCCAAAGGATTTTTTGATGGTTAAGCGAGAATG 404
Query 419 GGCTTCAACAAGAATCCAGGCTGCTTTTCGTGCTTTCCTCGCAAGACAGGCGTTTAGAGC 478
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 405 GGCTTCAACAAGAATCCAGGCTGCTTTTCGTGCTTTCCTGGCAAGACAGGCGTTTAGAGC 464
Query 479 TCTGAAGGCTGTCGTGAGAATTCAGGCCATTTTTCGTGGCAGACAAGTTAGGAAACAAGC 538
|||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 465 TCTGAAGGCTGTAGTGAGAATTCAGGCAATTTTTCGTGGAAGACAAGTTAGGAAACAAGC 524
Query 539 TGCCGTTACACTCAGGTGTATGCAAGCTCTTGTTCGTGTTCAGTCTCGTGTAAGAGCTCA 598
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 525 AGCCGTTACACTCAGGTGTATGCAAGCTCTCGTTCGTGTTCAGTCTCGTGTAAGAGCTCA 584
Query 599 TCGTAGAGCGCCTTCTGACTCGCTTGAGCTAAAAGATCCTGTTAAGCAGACCGAGAAGGG 658
||||||||||||||| ||||| ||||||||||||||||||| |||||||| ||||||||
Sbjct 585 TCGTAGAGCGCCTTCAGACTCTATTGAGCTAAAAGATCCTGTAAAGCAGACTGAGAAGGG 644
Query 659 TTGGTGTGGTAGCCCCAGAAGTATAAAAGAAGTGAAAACGAAGTTACAGATGAAGCAAGA 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 645 TTGGTGTGGTAGCCCCAGAAGTATAAAAGAAGTGAAAACGAAGTTACAGATGAAGCAAGA 704
Query 719 AGGGGCTATTAAGAGGGAGAGAGCTATGGTTTATGCGCTCACACATCAGTCGAGGACGTG 778
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 705 AGGGGCTATTAAGAGAGAGAGAGCTATGGTTTATGCGCTCACACATCAGTCGAGGACGTG 764
Query 779 TCCAAGTCCAAGCGGAAGAGCGATTACGCATCATGGTTTGCGCAAGAGCAGTCCTGGTTG 838
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 765 TCCAAGTCCAAGCGGAAGAGCGATTACGCATCATGGTTCACGCAAGAGCAGTCCTGGTTG 824
Query 839 GAACTGGTATGATGATGTTGGGACATTTTCAAGGAAAAGTAGTGAGAGCAGTGTGTTATC 898
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 825 GAACTGGTATGAAGATGTTGGGACATTTTCAAGGAAAAGTAGTGAGAGCAGTGTAATATC 884
Query 899 TGAATATGAGACTGTAACAGTCAGGAAGAACAATCTTTCTTCAACTAGAGTTCTTGCCAG 958
||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 885 TGAATATGAAACTGTAAAAGTCAGGAAGAACAATCTTTCTTCAACTAGAGTTCTTGCTAG 944
Query 959 ACCTCCTCTTCTTCTTCCTCCGGTTTCGTCTGGCATGAGTTATGATTCTTTACACGATGA 1018
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 945 ACCTCCTCTTCTTCTTCCTCCGGTTTCGTCTGGCACGAGTTATGATTCTTTACACGATGA 1004
Query 1019 AACATCAACATCATCGACATCTCAATCACCAGTTGCATTCTCCAGCAGTGTTCTTGATGG 1078
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1005 GACATCAACATCATCGACATCTCAATCACCAGTTGCATTCTCCAGCAGTGTTCTTGATGG 1064
Query 1079 TGGTGGGTACTATCGAAAGCCGAGCTACATGAGCCTGACACAATCTACTCAAGCCAAGCA 1138
|||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1065 TGGTGGATACTATCGAAAGCCGAGCTATATGAGCCTGACGCAATCTACTCAAGCCAAGCA 1124
Query 1139 GAGACAATCAGGATTATCTTGCAACGGAGATGCAAGACGCAGTGCTGGTTCAGACCAGTG 1198
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1125 GAGACAATCAGGATTATCTTGCAACGGAGATGCAAGATGCAGTGCTGGTTCAGACCAGTG 1184
Query 1199 TACTGATCTATACCCTCCGGGGA 1221
||||||||||||||| |||||||
Sbjct 1185 TACTGATCTATACCCACCGGGGA 1207
> Ahg476404 jgi|Araly1|476404|fgenesh2_kg.2__1534__AT1G72670.1
Length=1646
Score = 115 bits (62), Expect = 9e-25
Identities = 101/119 (85%), Gaps = 6/119 (5%)
Strand=Plus/Plus
Query 1035 ACATCTCAATCACCAGTTGCATTCTCCAGCAGTGTT-CTTGATGG-TGGTGGGTACTATC 1092
||||||||||| |||||| | ||||| | ||| || ||||| || || |||||||| |
Sbjct 1140 ACATCTCAATCCCCAGTTCCCTTCTCGGGAAGT-TTCCTTGA-GGAAGGAGGGTACTA-C 1196
Query 1093 -GAAAGCCGAGCTACATGAGCCTGACACAATCTACTCAAGCCAAGCAGAGACAATCAGG 1150
||||||||||||||||||||||||||||||||| | |||| |||||||||| ||||||
Sbjct 1197 AGAAAGCCGAGCTACATGAGCCTGACACAATCTATTAAAGCTAAGCAGAGACGATCAGG 1255
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54773772310
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5