BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G17490.1
Length=569
Score E
Sequences producing significant alignments: (Bits) Value
Ahg920668 jgi|Araly1|920668|scaffold_101949.1 379 1e-104
> Ahg920668 jgi|Araly1|920668|scaffold_101949.1
Length=280
Score = 379 bits (205), Expect = 1e-104
Identities = 248/267 (93%), Gaps = 9/267 (3%)
Strand=Plus/Plus
Query 71 AAGATCATTAATGGCGGAACCAAAACAAAGCTCTCTTTC----T--GAGGTGAAGACAAA 124
|||||||| ||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 11 AAGATCATCCATGGCGGAACCAAAACAAAGCTCTCTTTCTGAGTCAGAGGTGAAGACAAA 70
Query 125 TGTGATTGGAAGCAGAAAAGAAGAGAAGGAATCGATGTTTCATGGGAAAGAGACTCATGG 184
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 71 TGTGATTGGAAGCAGCAAAGAAGAGAAAGAATCGATGTTTCATGGGAAAGAGACTCATGG 130
Query 185 AAGAAGTGAAGACATTGATGAGAAGACAAGGGTTGATGATGTTAAAGGACCTGGTGTTCT 244
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 131 AAGAAGTGAAGACATTGATGAGAAGACAAAAGTTGATGATGTTAAAGGACCTGGTGTTCT 190
Query 245 CGGGCGTATGATGGAAGAAATGGAAGCCATTGTTGACGCTGTTACTCCTAACAAAAGTTC 304
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 191 CGGGCGTATGAAGGAAGAAATGGAAGCCATTGTTGACGCTGTTACTCCTACCAAAAGTTC 250
Query 305 TGACAAGT-AA-AA-TGATTAGTATCG 328
|||||||| || || ||||| || |||
Sbjct 251 TGACAAGTGAAGAAATGATTGGTTTCG 277
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20794796005
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5