BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G17510.1
Length=667
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471958 jgi|Araly1|471958|fgenesh2_kg.1__1912__AT1G17510.1 625 1e-178
> Ahg471958 jgi|Araly1|471958|fgenesh2_kg.1__1912__AT1G17510.1
Length=513
Score = 625 bits (338), Expect = 1e-178
Identities = 449/500 (90%), Gaps = 18/500 (4%)
Strand=Plus/Plus
Query 67 GAGAGAAAGAGAGTGCATAGTCGTGCTTGTCGATGGCGATCAAAGCGGGAAAGGTGTTGA 126
|||||| |||||||||||||||||| ||||| ||||||||||||||||||||||| ||||
Sbjct 1 GAGAGAGAGAGAGTGCATAGTCGTGTTTGTCAATGGCGATCAAAGCGGGAAAGGTTTTGA 60
Query 127 GAACGGCGACTGCTGCTGCGAGGAAGTTCCAACAGAAACAGTTCTCAGCCTCATCTTCGG 186
||||||||||||| || ||||||||||||||||||||||||||||||| | ||||||| |
Sbjct 61 GAACGGCGACTGCGGCGGCGAGGAAGTTCCAACAGAAACAGTTCTCAGGCACATCTTC-G 119
Query 187 CGTTTCCAGAGCCACCACCGGTGTCTCCATCTTCCGGTGTAGGAGCATTTCTGGGTATTC 246
| | | ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 120 -G----C---G------CCGGTGTCTCCATCTTCCGGTGTAGGATCATTTCTGGGTATTC 165
Query 247 CCAAGATTATTCGCTCGGAATCCGATTTATTAGTCTCCAAGTACATCAGAATTGCCCAGG 306
|||||||| |||||||||||||||||| ||| ||||||||||||||||| |||||||||
Sbjct 166 CCAAGATTCGTCGCTCGGAATCCGATTTGTTAATCTCCAAGTACATCAGACTTGCCCAGG 225
Query 307 GTCGATTGACGAAGAAGGGTGATTACACAGAGGAGAAGCTAAAGAAAATGTTGTCTGGTG 366
|||||||||||||||||||||||| ||||||||||||||| | |||||||||||||||||
Sbjct 226 GTCGATTGACGAAGAAGGGTGATTTCACAGAGGAGAAGCTTACGAAAATGTTGTCTGGTG 285
Query 367 AAGACAGGGTAGGGATCGGTGAGACCATGAAGTTACTCGAGGGTCGCAACACTGGACTAG 426
||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||| |||
Sbjct 286 AAGACAGGGTAGGGATCGGTGAGACAATGAAGTTACTGGAGGGTCGCAAAACTGGAGTAG 345
Query 427 TATCTTCTAAAAAACCAAACTCCGGTCGATCCAAAAAGTGATTCCTCTGTTTCCATCATC 486
||||||||||||| ||||| ||| ||||||||| |||| |||| ||||| |||||||||
Sbjct 346 AATCTTCTAAAAAAACAAACACCGCTCGATCCAAGAAGTAATTCTTCTGTCTCCATCATC 405
Query 487 AAGCTTTTGCATTTCTAGTTTGCAAGTTTCTTTCTTGTTGGATTTCTTCTACAA---GTT 543
||||||||||| ||||||||||||||||| ||| ||||||||||||||| |||| |||
Sbjct 406 AAGCTTTTGCACTTCTAGTTTGCAAGTTTTTTTTTTGTTGGATTTCTTCAACAACTAGTT 465
Query 544 GTTGTATGAATCACAATATA 563
||||||||||||||||||||
Sbjct 466 GTTGTATGAATCACAATATA 485
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24474912714
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5