BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G17520.1
Length=1375
Score E
Sequences producing significant alignments: (Bits) Value
Ahg920672 jgi|Araly1|920672|scaffold_101953.1 1419 0.0
> Ahg920672 jgi|Araly1|920672|scaffold_101953.1
Length=935
Score = 1419 bits (768), Expect = 0.0
Identities = 881/935 (94%), Gaps = 10/935 (1%)
Strand=Plus/Plus
Query 143 CGATAATAGAAGCGTAGAGATGGGAAATCAGAAGCTCAAATGGACGGCGGAGGAAGAGGA 202
||| || |||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 3 CGAAAACAGAAGCGTAGAGATGGGAAACCAGAAGCTTAAATGGACGGCGGAGGAAGAGGA 62
Query 203 GGCGTTACTCGCCGGAGTTAGGAAGCATGGCCCTGGAAAGTGGAAGAATATTCTCCGCGA 262
||| ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 63 GGCTTTACTCGCCGGAGTTGGGAAGCATGGCCCAGGAAAGTGGAAGAATATTCTCCGCGA 122
Query 263 TCCTGAATTAGCTGAGCAGCTCTCTAGTCGCTCTAACATCGACCTCAAGGATAAATGGCG 322
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 123 TCCTGAATTCGCTGAGCAGCTCTCTAGTCGCTCTAACATCGACCTCAAGGATAAGTGGCG 182
Query 323 TAATTTAAGTGTTGCTCCTGGTATTCAAGGCTCTAAGGATAAGATACGGACACCAAAAAT 382
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 183 TAATTTAAGTGTTGCCCCTGGTATTCAAGGCTCTAAGGATAAGATACGGACACCAAAAAT 242
Query 383 CAAAGCTGCTGCTTTTCATCTGGCTGCCGCTGCTGCTGCCGCTAT-TGTAACTCCTACTC 441
||||||||||||||||||||||||| ||||||| ||||||||||| | | |||||| |||
Sbjct 243 CAAAGCTGCTGCTTTTCATCTGGCTTCCGCTGCGGCTGCCGCTATCT-TGACTCCTCCTC 301
Query 442 ATAGTGGTCACTCTTCTCCAGTTGCTACTCTTCCCCGAAGTGGATCTTCTGATTTGAGCA 501
|||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 302 ATAGTGCTCACTCTTCTCCAGTTGCTGTTCTTCCCCGAAGTGGATCTTCTGATTTGAGCA 361
Query 502 TTGATGATAGTTTTAACATTGTAGTTGATCCAAAGAATGCTCCCAGGTATGATGGAATGA 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 362 TTGATGATAGTTTTAACATTGTAGTTGATCCAAAGAATGCTCCCAGGTATGATGGAATGA 421
Query 562 TATTTGAAGCTCTTTCAAACTTGACGGATGCTAATGGATCTGATGTCAGCGCAATTTTCA 621
||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct 422 TATTTGAAGCTCTTTCAGCCTTGACGGATGCTAATGGATCTGATGTCAGTGCAATTTTCA 481
Query 622 ACTTCATTGAGCAACGACAAGAAGTGCCACCAAATTTCAGGAGGATGCTTAGTTCAAGAT 681
|||||| ||||||||||| |||||||||||||||||||| ||||| |||||||||||||
Sbjct 482 GCTTCATCGAGCAACGACATGAAGTGCCACCAAATTTCAGAAGGATCCTTAGTTCAAGAT 541
Query 682 TGAGGAGGCTTGCAGCTCAGGGAAAGCTTGAAAAGGTTAGCCACTTAAAATCAACACAGA 741
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 542 TGAGGAGGCTTGCTGCTCAGGGAAAACTTGAAAAGGTTAGCCACTTAAAATCAACACAGA 601
Query 742 ACTTCTATAAGATGAATGATAATAGCTTGGTA-CAAAGAACACCACATGTAGCGAGACCA 800
|||||||||||||||||||||||||||||||| ||| ||||| ||| |||||||||||||
Sbjct 602 ACTTCTATAAGATGAATGATAATAGCTTGGTAACAA-GAACAACACCTGTAGCGAGACCA 660
Query 801 AAAGAGAGCAACACGAAATCCCGGCAGCAGACAAACAGTCAGGGACCCTCTATTTCACAG 860
|||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 661 AAAGAGAGCAACACGAAAGCCCGGCAGCAGACAAACAGTCAAGGACCCTCTATTTCACAG 720
Query 861 CAGATTGTTG---AAGCTTCAATAACAGCAGCTTATAAGCTCGTAGAAGTAGAGAACAAA 917
||||| |||| ||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 721 CAGATGGTTGCTGAAGCTTCAATAACAGCAGCTTATAAGCTCGTGGAAGTGGAGAACAAA 780
Query 918 TTAGATGTGTCGAAAGGAGCTGCAGAAGAGATAGAGAGACTGATGAAACTGGCAGAAGAG 977
||||||||||||||||||||| ||||||||||| | ||| |||| |||||||||||||
Sbjct 781 TTAGATGTGTCGAAAGGAGCTTCAGAAGAGATATACAGATTGATAAAACTGGCAGAAGTT 840
Query 978 GCTGATGAGATGCTAGTGATAGCGAGAGAGATGCACGAAGAATGTAGTCAGGGAAAGATT 1037
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 841 GCTGATGATATGCTAGTGATAGCGAGAGAGATGCACGAAGAATGTAGTCAAGGAAAGATT 900
Query 1038 ATGTACTTGAATTGAGG---TTGATGGAACAAAAG 1069
|||||||| |||||||| |||||||||||||||
Sbjct 901 ATGTACTTAAATTGAGGAGGTTGATGGAACAAAAG 935
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51465937950
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5