BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G17530.1
Length=876
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471960 jgi|Araly1|471960|fgenesh2_kg.1__1914__AT1G17530.1 1214 0.0
Ahg476412 jgi|Araly1|476412|fgenesh2_kg.2__1542__AT1G72750.1 424 7e-118
> Ahg471960 jgi|Araly1|471960|fgenesh2_kg.1__1914__AT1G17530.1
Length=837
Score = 1214 bits (657), Expect = 0.0
Identities = 786/847 (93%), Gaps = 14/847 (2%)
Strand=Plus/Plus
Query 28 TTCTCTGACTCCGTCGTCTCTTTCTCCGTCGCCACCGTTCCTAAAACGTCTCCCGTCTTC 87
|||||| |||||| |||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 3 TTCTCTCACTCCGGCGTCTCTTTCTCCGTCGCCACCATTCCTAAAACCTCTCCCGTCTTC 62
Query 88 TTCTAATGGCGATCAATCGTAGCTCCGATCATGAATCCGACGAAAACACCCGTCTTTACC 147
||||||||||||||||| |||| ||||| | |||||| |||||||||| |||||||| |
Sbjct 63 CTCTAATGGCGATCAATCATAGCCCCGATAACGAATCCAACGAAAACACGCGTCTTTATC 122
Query 148 ATCCTTACCAGAACTACCAGGTCCCGATCAAATCTCAGTATCTATACAAGCTTCCGACTT 207
|||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 123 ATCCTTACCAAAACTACCAGGTCCCGATCAAAGCTCAGTATCTATACAAGCTTCCGACTT 182
Query 208 CTCCGGAATTTCTATTCACGGAAGAGTCTCTCAAGCAGCGTCGATCATGGGGAGAAAATC 267
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 183 CTCCGGAATTTCTCTTCACGGAAGAGTCTCTCAAACAGCGTCGATCATGGGGAGAAAATC 242
Query 268 TCACTTTCTACACAGGGACGGGTTATCTAGCCGGCTCTGTAGCCGGTGCTTCAGCTGGGA 327
|||||||||||||||| ||||||||||| | ||||||||||||||| ||| |||||||||
Sbjct 243 TCACTTTCTACACAGGAACGGGTTATCTCGGCGGCTCTGTAGCCGGCGCTGCAGCTGGGA 302
Query 328 TCTTCTCTGGTATCAAGAGTTTCGAAAATGGAGACACGACGAAGCTGAAAATCAACAGGA 387
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 303 TCTTCTCCGGTATCAAGAGTTTCGAAAATGGAGACACGACGAAGCTGAAAATCAACAGGA 362
Query 388 TTTTGAATTCGTCTGGTCAGGCAGGTCGTACTTGGGGTAATAGGGTTGGGATTGTTGGGT 447
|||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 363 TTTTGAATTCGTCTGGTCAGGCAGGTCGCACTTGGGGTAATAGGATTGGGATTGTTGGGT 422
Query 448 TGATCTACGCAGGGATTGAGAGTGGTGTGGTGGCGGTAACTGATAAGGACGATGTTTGGA 507
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 423 TGATCTACGCAGGGATTGAGAGTGGTGTTGTGGCGGTAACTGATAAGGATGATGTTTGGA 482
Query 508 CCAGTGTTGTCGCTGGTCTGGGAACTGGAGCGGTCTTTAGGGCAGCACGAGGAGTGAGAT 567
||||||| || |||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 483 CCAGTGTGGTGGCTGGTCTTGGAACGGGAGCGGTCTTTAGGGCAGCACGAGGAGTGAGAT 542
Query 568 CTGCGGCTGTGGCTGGTGCTTTTGGCGGAATTGCGGCTGGTGCAGTTGTGGCGGGGAAGC 627
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 543 CTGCGGCTGTGGCTGGTGCTTTTGGCGGAATTGCGGCTGGTGCGGTTGTGGCGGGGAAGC 602
Query 628 AGGTTTTCAAGCGGTATGCTCACATATGAAGAACCGGAGTGATCTTTAGAGCCCACCTAT 687
||||||||||||||||||||||||||||||||||| ||||| | | ||||||
Sbjct 603 AGGTTTTCAAGCGGTATGCTCACATATGAAGAACCAGAGTG--C-------C--ACCTAT 651
Query 688 ATGGGAAAATCATAAAAATCAAAGCTTT-TTCGGG-TTTCTAGGGTAGAATTCTGGTTTA 745
||||||||||||||||||| | |||||| || ||| ||||||||||||||||||||||||
Sbjct 652 ATGGGAAAATCATAAAAATTAGAGCTTTGTTTGGGGTTTCTAGGGTAGAATTCTGGTTTA 711
Query 746 CATTTTAGCGTATGTTAACCTGCGAACCTTTCTTTATAGATATAATAATAACAATAATAA 805
| ||||||| || ||||||||||||||||| |||||| | ||| |||||| ||||||||
Sbjct 712 CGTTTTAGCATAAATTAACCTGCGAACCTTTATTTATATAGATA-TAATAATAATAATAA 770
Query 806 AGGTTTTACCTTTTGATATTCGAATCTCCATGAGTTATTGCTTATGATCATGCTAGCTTT 865
||||||||||||||| |||||||||||||||||||| ||| ||||||| |||||||||||
Sbjct 771 AGGTTTTACCTTTTGGTATTCGAATCTCCATGAGTTCTTGTTTATGATTATGCTAGCTTT 830
Query 866 TGTTATA 872
|||||||
Sbjct 831 TGTTATA 837
> Ahg476412 jgi|Araly1|476412|fgenesh2_kg.2__1542__AT1G72750.1
Length=1159
Score = 424 bits (229), Expect = 7e-118
Identities = 454/561 (81%), Gaps = 21/561 (4%)
Strand=Plus/Plus
Query 111 TCCGATCATGAATCCGACGAAAACACCCGTCTTTACCATCCTTACCAGAACTACCAGGTC 170
|||||||||| || ||||||||||| | |||||| |||||||||| |||||| | |||
Sbjct 230 TCCGATCATGGGTCAGACGAAAACACAAGACTTTACAATCCTTACCAAAACTACGAAGTC 289
Query 171 CCGAT---CAAATCTCAGTATCTATACAAGCTTCCGACTTCTCCGGAATTTCTATTCACG 227
|| || |||||||||||| || ||||||||||| || || || || ||||| ||||||
Sbjct 290 CCAATCAACAAATCTCAGTACCTTTACAAGCTTCCAACATCCCCTGAGTTTCTCTTCACG 349
Query 228 GAAGAGTCTCTCAA-GCAGCGTCGATCATGGGGAGAAAATCTCACTTTCTACACAGGGAC 286
|| |||||| | || ||| ||| |||| ||||| || ||||||||||||||||| || ||
Sbjct 350 GAGGAGTCT-TTAAGGCAACGTAGATCTTGGGGTGAGAATCTCACTTTCTACACCGGAAC 408
Query 287 GGGTTATCTAGCCGGCTCTGTAGCCGGTGCTTCAGCTGGGA-TCT-TCTCTGGTA-TCAA 343
| ||| || | || || || ||||| ||||| | | ||| | | || |||| | ||||
Sbjct 409 AGCTTACCTCGGTGGATCCGTTGCCGGAGCTTCTG-TTGGAGT-TATCACTGG-AGTCAA 465
Query 344 GAGTTTCGAAAATGGAGACACGACGAAGCTGAAAATCAACAGGATTTTGAATTCGTCTGG 403
|| |||||| ||| |||||||||||||| |||||||||||||| ||||| || |||||
Sbjct 466 AAGCTTCGAATCTGGCGACACGACGAAGCTCAAAATCAACAGGATCTTGAACTCTTCTGG 525
Query 404 TCAGGCAGGTCGTACTTGGGGTAATAGGGTTGGGATTGTTGGGTTGATCTACGCAGGGAT 463
||| | ||||| ||||||||||||||| |||| || |||||||| | |||||||||||
Sbjct 526 TCAAACGGGTCGAACTTGGGGTAATAGGATTGGTATCATTGGGTTGGTTTACGCAGGGAT 585
Query 464 TGAGAGTGGTGTGGTGGCGGTAACTGATAAG-GACGATGTTTGGACCAGTGTTGTCGCTG 522
||||||||||| ||||| | || ||| || || ||||||||||||||||| || ||||
Sbjct 586 CGAGAGTGGTGTTGTGGCTGCCACGGAT-AGAGATGATGTTTGGACCAGTGTGGTGGCTG 644
Query 523 GTC-TGGGAACTGGAGCGGTCTT-TAGGGCAGC-ACGAGGAGTGAGATCTGCGGCTGTGG 579
||| |||| || ||||| || || ||| || || | ||||||||||||||||||||||||
Sbjct 645 GTCTTGGG-ACCGGAGCTGT-TTGTAGAGCGGCTA-GAGGAGTGAGATCTGCGGCTGTGG 701
Query 580 CTGGTGCTTTTGGCGGAATTGCGGCTGGTGCAGTTGTGGCGGGGAAGCAGGTTTTCAAGC 639
|||||||| |||| ||| |||||||||| || ||||| || |||||||| || | ||||
Sbjct 702 CTGGTGCTCTTGGTGGACTTGCGGCTGGAGCTGTTGTAGCTGGGAAGCAAATTGTGAAGC 761
Query 640 GGTATGCT-CACATATGAAGA 659
|||||| | | ||| ||||||
Sbjct 762 GGTATG-TGCCCATTTGAAGA 781
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32442602367
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5