BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G17530.1 Length=876 Score E Sequences producing significant alignments: (Bits) Value Ahg471960 jgi|Araly1|471960|fgenesh2_kg.1__1914__AT1G17530.1 1214 0.0 Ahg476412 jgi|Araly1|476412|fgenesh2_kg.2__1542__AT1G72750.1 424 7e-118 > Ahg471960 jgi|Araly1|471960|fgenesh2_kg.1__1914__AT1G17530.1 Length=837 Score = 1214 bits (657), Expect = 0.0 Identities = 786/847 (93%), Gaps = 14/847 (2%) Strand=Plus/Plus Query 28 TTCTCTGACTCCGTCGTCTCTTTCTCCGTCGCCACCGTTCCTAAAACGTCTCCCGTCTTC 87 |||||| |||||| |||||||||||||||||||||| |||||||||| |||||||||||| Sbjct 3 TTCTCTCACTCCGGCGTCTCTTTCTCCGTCGCCACCATTCCTAAAACCTCTCCCGTCTTC 62 Query 88 TTCTAATGGCGATCAATCGTAGCTCCGATCATGAATCCGACGAAAACACCCGTCTTTACC 147 ||||||||||||||||| |||| ||||| | |||||| |||||||||| |||||||| | Sbjct 63 CTCTAATGGCGATCAATCATAGCCCCGATAACGAATCCAACGAAAACACGCGTCTTTATC 122 Query 148 ATCCTTACCAGAACTACCAGGTCCCGATCAAATCTCAGTATCTATACAAGCTTCCGACTT 207 |||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 123 ATCCTTACCAAAACTACCAGGTCCCGATCAAAGCTCAGTATCTATACAAGCTTCCGACTT 182 Query 208 CTCCGGAATTTCTATTCACGGAAGAGTCTCTCAAGCAGCGTCGATCATGGGGAGAAAATC 267 ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 183 CTCCGGAATTTCTCTTCACGGAAGAGTCTCTCAAACAGCGTCGATCATGGGGAGAAAATC 242 Query 268 TCACTTTCTACACAGGGACGGGTTATCTAGCCGGCTCTGTAGCCGGTGCTTCAGCTGGGA 327 |||||||||||||||| ||||||||||| | ||||||||||||||| ||| ||||||||| Sbjct 243 TCACTTTCTACACAGGAACGGGTTATCTCGGCGGCTCTGTAGCCGGCGCTGCAGCTGGGA 302 Query 328 TCTTCTCTGGTATCAAGAGTTTCGAAAATGGAGACACGACGAAGCTGAAAATCAACAGGA 387 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 303 TCTTCTCCGGTATCAAGAGTTTCGAAAATGGAGACACGACGAAGCTGAAAATCAACAGGA 362 Query 388 TTTTGAATTCGTCTGGTCAGGCAGGTCGTACTTGGGGTAATAGGGTTGGGATTGTTGGGT 447 |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| Sbjct 363 TTTTGAATTCGTCTGGTCAGGCAGGTCGCACTTGGGGTAATAGGATTGGGATTGTTGGGT 422 Query 448 TGATCTACGCAGGGATTGAGAGTGGTGTGGTGGCGGTAACTGATAAGGACGATGTTTGGA 507 |||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| Sbjct 423 TGATCTACGCAGGGATTGAGAGTGGTGTTGTGGCGGTAACTGATAAGGATGATGTTTGGA 482 Query 508 CCAGTGTTGTCGCTGGTCTGGGAACTGGAGCGGTCTTTAGGGCAGCACGAGGAGTGAGAT 567 ||||||| || |||||||| ||||| |||||||||||||||||||||||||||||||||| Sbjct 483 CCAGTGTGGTGGCTGGTCTTGGAACGGGAGCGGTCTTTAGGGCAGCACGAGGAGTGAGAT 542 Query 568 CTGCGGCTGTGGCTGGTGCTTTTGGCGGAATTGCGGCTGGTGCAGTTGTGGCGGGGAAGC 627 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 543 CTGCGGCTGTGGCTGGTGCTTTTGGCGGAATTGCGGCTGGTGCGGTTGTGGCGGGGAAGC 602 Query 628 AGGTTTTCAAGCGGTATGCTCACATATGAAGAACCGGAGTGATCTTTAGAGCCCACCTAT 687 ||||||||||||||||||||||||||||||||||| ||||| | | |||||| Sbjct 603 AGGTTTTCAAGCGGTATGCTCACATATGAAGAACCAGAGTG--C-------C--ACCTAT 651 Query 688 ATGGGAAAATCATAAAAATCAAAGCTTT-TTCGGG-TTTCTAGGGTAGAATTCTGGTTTA 745 ||||||||||||||||||| | |||||| || ||| |||||||||||||||||||||||| Sbjct 652 ATGGGAAAATCATAAAAATTAGAGCTTTGTTTGGGGTTTCTAGGGTAGAATTCTGGTTTA 711 Query 746 CATTTTAGCGTATGTTAACCTGCGAACCTTTCTTTATAGATATAATAATAACAATAATAA 805 | ||||||| || ||||||||||||||||| |||||| | ||| |||||| |||||||| Sbjct 712 CGTTTTAGCATAAATTAACCTGCGAACCTTTATTTATATAGATA-TAATAATAATAATAA 770 Query 806 AGGTTTTACCTTTTGATATTCGAATCTCCATGAGTTATTGCTTATGATCATGCTAGCTTT 865 ||||||||||||||| |||||||||||||||||||| ||| ||||||| ||||||||||| Sbjct 771 AGGTTTTACCTTTTGGTATTCGAATCTCCATGAGTTCTTGTTTATGATTATGCTAGCTTT 830 Query 866 TGTTATA 872 ||||||| Sbjct 831 TGTTATA 837 > Ahg476412 jgi|Araly1|476412|fgenesh2_kg.2__1542__AT1G72750.1 Length=1159 Score = 424 bits (229), Expect = 7e-118 Identities = 454/561 (81%), Gaps = 21/561 (4%) Strand=Plus/Plus Query 111 TCCGATCATGAATCCGACGAAAACACCCGTCTTTACCATCCTTACCAGAACTACCAGGTC 170 |||||||||| || ||||||||||| | |||||| |||||||||| |||||| | ||| Sbjct 230 TCCGATCATGGGTCAGACGAAAACACAAGACTTTACAATCCTTACCAAAACTACGAAGTC 289 Query 171 CCGAT---CAAATCTCAGTATCTATACAAGCTTCCGACTTCTCCGGAATTTCTATTCACG 227 || || |||||||||||| || ||||||||||| || || || || ||||| |||||| Sbjct 290 CCAATCAACAAATCTCAGTACCTTTACAAGCTTCCAACATCCCCTGAGTTTCTCTTCACG 349 Query 228 GAAGAGTCTCTCAA-GCAGCGTCGATCATGGGGAGAAAATCTCACTTTCTACACAGGGAC 286 || |||||| | || ||| ||| |||| ||||| || ||||||||||||||||| || || Sbjct 350 GAGGAGTCT-TTAAGGCAACGTAGATCTTGGGGTGAGAATCTCACTTTCTACACCGGAAC 408 Query 287 GGGTTATCTAGCCGGCTCTGTAGCCGGTGCTTCAGCTGGGA-TCT-TCTCTGGTA-TCAA 343 | ||| || | || || || ||||| ||||| | | ||| | | || |||| | |||| Sbjct 409 AGCTTACCTCGGTGGATCCGTTGCCGGAGCTTCTG-TTGGAGT-TATCACTGG-AGTCAA 465 Query 344 GAGTTTCGAAAATGGAGACACGACGAAGCTGAAAATCAACAGGATTTTGAATTCGTCTGG 403 || |||||| ||| |||||||||||||| |||||||||||||| ||||| || ||||| Sbjct 466 AAGCTTCGAATCTGGCGACACGACGAAGCTCAAAATCAACAGGATCTTGAACTCTTCTGG 525 Query 404 TCAGGCAGGTCGTACTTGGGGTAATAGGGTTGGGATTGTTGGGTTGATCTACGCAGGGAT 463 ||| | ||||| ||||||||||||||| |||| || |||||||| | ||||||||||| Sbjct 526 TCAAACGGGTCGAACTTGGGGTAATAGGATTGGTATCATTGGGTTGGTTTACGCAGGGAT 585 Query 464 TGAGAGTGGTGTGGTGGCGGTAACTGATAAG-GACGATGTTTGGACCAGTGTTGTCGCTG 522 ||||||||||| ||||| | || ||| || || ||||||||||||||||| || |||| Sbjct 586 CGAGAGTGGTGTTGTGGCTGCCACGGAT-AGAGATGATGTTTGGACCAGTGTGGTGGCTG 644 Query 523 GTC-TGGGAACTGGAGCGGTCTT-TAGGGCAGC-ACGAGGAGTGAGATCTGCGGCTGTGG 579 ||| |||| || ||||| || || ||| || || | |||||||||||||||||||||||| Sbjct 645 GTCTTGGG-ACCGGAGCTGT-TTGTAGAGCGGCTA-GAGGAGTGAGATCTGCGGCTGTGG 701 Query 580 CTGGTGCTTTTGGCGGAATTGCGGCTGGTGCAGTTGTGGCGGGGAAGCAGGTTTTCAAGC 639 |||||||| |||| ||| |||||||||| || ||||| || |||||||| || | |||| Sbjct 702 CTGGTGCTCTTGGTGGACTTGCGGCTGGAGCTGTTGTAGCTGGGAAGCAAATTGTGAAGC 761 Query 640 GGTATGCT-CACATATGAAGA 659 |||||| | | ||| |||||| Sbjct 762 GGTATG-TGCCCATTTGAAGA 781 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 32442602367 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5