BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G17540.1
Length=2574
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471961 jgi|Araly1|471961|fgenesh2_kg.1__1915__AT1G17540.1 3988 0.0
> Ahg471961 jgi|Araly1|471961|fgenesh2_kg.1__1915__AT1G17540.1
Length=2578
Score = 3988 bits (2159), Expect = 0.0
Identities = 2459/2598 (95%), Gaps = 44/2598 (2%)
Strand=Plus/Plus
Query 1 TTCGGTCTCCTTATTTCCTCCTTCTGAGGGTAATTGAAAGACCGTACCACAATGTCTTTC 60
||||||||||||||||||||||| ||||||| | |||| | ||||||||||||||
Sbjct 1 TTCGGTCTCCTTATTTCCTCCTTGTGAGGGT-A---AAAG---G--CCACAATGTCTTTC 51
Query 61 TAGTTTCTCC-AGAAGCAAAAGTTTCCAGCAATCATCTCGAGGGCTGAGAAACAATGGCT 119
||||||| || |||||| ||||| |||||||||||||||||||||||||||| ||||||
Sbjct 52 TAGTTTC-CCGAGAAGC-AAAGTGTCCAGCAATCATCTCGAGGGCTGAGAAA-GATGGCT 108
Query 120 GCAAGAAGACTCAAAGGAAAAGACAGCAAAGCAGTTACCGCCATAGCCATTGATAAAGAT 179
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 109 ACAAGAAGACTAAAAGGAAAAGACAGTAAAGCAGTTACCGCCATAGCCATTGATAAGGAT 168
Query 180 AAGAACAGCCAACACGCTTTGAAATGGGCTGTTGAGAATATCATCATCGATTCTCCAAAC 239
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 169 AAGAACAGCCAACACGCTTTGAAATGGGCTGTTGAGAACATCATCATCGATTCTCCAAAC 228
Query 240 TGTATCCTTCTCCATGTTCAAACCAAACTGAGATTTGGGGCAGGAGAAAACACAGAAGCA 299
||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 229 TGTATCCTTCTCCATGTTCAAACCAAATTGAGAATTGGGGCAGGAGAAAACACAGAAGCT 288
Query 300 CCACATGACAACCAAGAAGAGGCGCATCAGTTCTTCCTTCCCTTTAGAGGATTCTGTGCT 359
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 289 CCACATGACAACCAAGAAGAGGCTCATCAGTTCTTCCTTCCCTTTAGAGGATTCTGTGCT 348
Query 360 CGGAAAGGGATTATAGCAACGGAGGTTCTTCTTCACGATATTGACATCTCGAGTGCAATT 419
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 349 CGGAAAGGGATTATAGCAACGGAGGTTCTTCTTCACGATATTGACATCTCCAGTGCAATT 408
Query 420 GTTGACTACATCACCAACAATTCCATTTCAAATATAGTCATTGGAGCCTCTGCTCGAAAT 479
||||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||
Sbjct 409 GTTGACTACATCACCAACAATTCCATTTCAAATTTAGTCCTTGGAGCCTCTGCACGAAAT 468
Query 480 TCTTTCCTCAAGAAGTTTAAGAGCGTAGATGTGCCAACGACTCTGCTTAAAACAACACCA 539
||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |||
Sbjct 469 TCTTTCCTCAAGAAGTTTAAGAGCGCAGATGTGCCAACGACTATGCTTAAAACAACCCCA 528
Query 540 GATACATGTGCTGTCTTCATTGTGTCTAAAGGGAAGCTCTTAACAAGCAGATCAGCGAGT 599
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 529 GATACATGTGCTGTCTTCATTGTGTCTAAAGGAAAGCTCTTAACAAGCAGATCAGCTAGT 588
Query 600 CGGCCTCAGACACCTCAAGGTCCTC--ACA---C---G----C---C-T--CAAGGTCCT 641
||||||||||||||||||||||||| ||| | | | | | |||||||||
Sbjct 589 CGGCCTCAGACACCTCAAGGTCCTCAGACACCGCAAGGCCCTCATACATCGCAAGGTCCT 648
Query 642 CAGACACCTCAAGCTCCTCAACACCCTCCTCATCCTTCAAAACATCCC-TCAATGATGTC 700
| ||||| |||| |||||||||| |||||||||||| |||||||||| | |||||||||
Sbjct 649 CTTACACCGCAAGGTCCTCAACACGCTCCTCATCCTTTAAAACATCCCGT-AATGATGTC 707
Query 701 TGATCCTGGCCCAACAAGTTCCACTTCCAGTGAATCCGGAAGGTCATCTCCTGCATTGAA 760
|||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| ||
Sbjct 708 TGATCCTGGCCCAACAAGTTCCACTTCCAGCGAATCCGGAAGGTCACCTCCTGCATTAAA 767
Query 761 CGGAGAATTATCTCCACCTACACCTCATTACAAGCCATCTTTGTATAGGAGTTCTATGTC 820
||||||||||||||||||||||||||||||||||| |||||| |||||||||| |||||
Sbjct 768 CGGAGAATTATCTCCACCTACACCTCATTACAAGCAATCTTTCAATAGGAGTTCCATGTC 827
Query 821 AGAGCTTAGTAATGAATTTCCCAGCGATCACAGTGCTGAATCAAATGCTAGCTTCTACAG 880
||||||||| ||||||| |||||| | |||||||||||||||||||||||| ||||||||
Sbjct 828 AGAGCTTAGCAATGAATCTCCCAGTGGTCACAGTGCTGAATCAAATGCTAGTTTCTACAG 887
Query 881 CATCCTAGGACGATCCACATATGGAGGAAGCTCACACTCTTCCATGTCTGAGATAACTGA 940
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 888 CATCCTAGGACGATCCACATATGGAGGAAGCTCACACTCTTCCATGTCTGAAATGACTGA 947
Query 941 TGGAGAGGAAAGCTTATCTGGGGGCAATATCACTGAACACCAGAATCAAAATCTTGAAGC 1000
|||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 948 TGGAGAAGAAAGCTTATCAGGGGGCAACATCACTGAACACCAGAATCAAAATCTTGAAGC 1007
Query 1001 AGAAGTGAGAAGATTGAGATTCGAATTGCAGCAGTTTAATGCTTCCATGTCCAGAGAAAG 1060
||||||||||||||||||| |||||||||| ||||||||||||||||| | |||||||||
Sbjct 1008 AGAAGTGAGAAGATTGAGACTCGAATTGCACCAGTTTAATGCTTCCATATGCAGAGAAAG 1067
Query 1061 TGCCCCTCATCTTCTAGGACCTAGAGCTACCGCCGAAACTGAAAGGCTGGAGGAAGCAAA 1120
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1068 TGCCCCTCATCTTCAAGGACCTAGAGCTACCGCCGAAACTGAAAAGCTGGAGGAAGCAAA 1127
Query 1121 GGCAGCAAGAGAGATGCTTAGGGCATTGTCTGAGATGGACAAGCAAAAAACACAGACTGC 1180
|||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |||
Sbjct 1128 GGCAGCAAGAGAGATGCTTAGGGCATTGTCCGAGATGGATAAGCAAAAAACACAGAGTGC 1187
Query 1181 GATCCAAGCAACTGAAGTGGCACAACGTCTAGCGGAAATAGAGACCCAGAAGAGACGACT 1240
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1188 GATCCAAGCAACTGAAATGGCACAACGTCTAGCGGAAATAGAGACCCAGAAGAGACGACT 1247
Query 1241 TGTGGAGATGCAAGCCAGGTTCAAGGAACAGAATATGGCCGATAGTATTTCCTACAGACG 1300
||||||||||||||||| ||||||||||||||| |||||||||||||| |||||||||||
Sbjct 1248 TGTGGAGATGCAAGCCAAGTTCAAGGAACAGAACATGGCCGATAGTATATCCTACAGACG 1307
Query 1301 ATATAGCATCAGAGATGTTGAAGGTGCTACCGACGGTTTTTCAGATGCTCTAAAGATTGG 1360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1308 ATATAGCATCAGAGATGTTGAAGGTGCTACCGACGGTTTTTCAGATGCTCTAAAGATTGG 1367
Query 1361 GGAAGGAGGGTATGGACCTGTGTATAAAGCCGTTCTTGAAAACACTTCTGTTGCCATCAA 1420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1368 GGAAGGAGGGTATGGACCTGTGTATAAAGCCGTTCTTGAAAACACTTCTGTTGCCATCAA 1427
Query 1421 ACTCTTGAAGTCAGATGTCTCACAAGGCCTGAAGCAGTTTAACCAAGAGATCGAGGTTCT 1480
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1428 AATCTTGAAGTCAGATGTCTCACAAGGCCTGAAGCAGTTTAACCAAGAGATCGAGGTTCT 1487
Query 1481 AAGTTGCATGAGGCACCCTAACATGGTGATCCTCCTCGGTGCTTGTCCCGAATATGGCTG 1540
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1488 AAGTTGCATGAGGCACCCTAACATGGTAATCCTCCTCGGTGCTTGTCCCGAATATGGCTG 1547
Query 1541 CCTGGTGTATGAGTACATGGAAAATGGAACATTAGAAGATCGTCTCTTTTGCAAAGATAA 1600
||| ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct 1548 CCTTGTGTATGAGTACATGGAAAATGGAACACTAGAAGATCGTCTCTTCTGCAAAGATAA 1607
Query 1601 TACTCCACCACTATCTTGGAGAGCACGGTTCAGAATCGCTGCTGAGATTGCTACAGGACT 1660
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1608 TACTCCACCATTATCTTGGAGAGCACGGTTCAGAATCGCTGCTGAGATTGCTACAGGACT 1667
Query 1661 TCTTTTCCTTCATCAGGCCAAACCCGAGCCGCTAGTACATCGAGATCTGAAGCCAGCAAA 1720
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1668 TCTTTTCCTTCATCAGGCCAAACCCGAGCCACTAGTACATCGAGATCTGAAGCCAGCAAA 1727
Query 1721 CATTCTGATAGACAGACATTTCACTAGCAAAATCAGTGACGTTGGTTTAGCTCGGTTGGT 1780
||||||| |||||||| |||| | ||||||||||||||||||||||||||||||||||||
Sbjct 1728 CATTCTGCTAGACAGATATTTAATTAGCAAAATCAGTGACGTTGGTTTAGCTCGGTTGGT 1787
Query 1781 ACCT-GCAGCTGTTGCTGATAGCTTCTCCAACTATCACATGACTGCTGCAGCCGGTACAT 1839
|||| || |||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 1788 ACCTCCCA-CTGTTGCTGATAGCTTCTCCAATTATCACATGACTGCTGCGGCCGGTACAT 1846
Query 1840 TTTGTTACATCGACCCCGAGTACCAGCAAACGGGAATGCTTGGGGTGAAGTCTGACTTGT 1899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1847 TTTGTTACATCGACCCCGAGTACCAGCAAACGGGAATGCTTGGGGTGAAGTCTGACTTGT 1906
Query 1900 ACTCATTTGGTGTGGTGCTTCTGCAAATCATCACAGCGATGCCAGCAATGGGTTTAAGCC 1959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1907 ACTCATTTGGTGTGGTGCTTCTGCAAATCATCACAGCGATGCCAGCAATGGGTTTAAGCC 1966
Query 1960 ATAGAGTAGAGAAAGCAATTGAGAAGAAGAAACTCCGAGAAGTTTTGGATCCAAAAATAT 2019
|||||||||||||| ||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 1967 ATAGAGTAGAGAAATCAATTGAGAAGAAGACATTCCGAGAAGTTTTGGATCCAAAAATAT 2026
Query 2020 CAGACTGGCCTGAAGAAGAGACAATGGTGCTAGCTCAATTGGCTTTGCAGTGCTGCGAGC 2079
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2027 CAGACTGGCCTGAAGAAGAGACTCTGGTGCTAGCTCAATTGGCTTTGCAGTGCTGCGAGC 2086
Query 2080 TGCGGAAAAAGGACAGACCTGATCTTGCTTCCGTTCTGTTGCCTGCACTGAGCAAGCTAA 2139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2087 TGCGGAAAAAGGACAGACCTGATCTTGCTTCCGTTCTGTTGCCTGCACTGAGCAAGCTAA 2146
Query 2140 GAGAGTTTGCAACAGAGGATCATGAAGTACATAACTCTGATAGAACATTTCATGTGTCAC 2199
||||||||||||||||| ||||||||||||||||||| |||| |||||||||||||||||
Sbjct 2147 GAGAGTTTGCAACAGAGAATCATGAAGTACATAACTCCGATAAAACATTTCATGTGTCAC 2206
Query 2200 GTGCTCACAATTTGGTTCCTCTTTCCCCAATATCTTCCTGTCAGACAGAGGATGATGCTT 2259
||||||| |||| |||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 2207 GTGCTCAAAATTCGGTTCCTCTTTCCCCAATATCTTCCTCTCAGACAGA---TGATGCTT 2263
Query 2260 GGGAAAATCCTATTGACAGAAAGATTGGAACTTCGACGTAAATCAAAGTGAAGCGACATT 2319
||||||||||| ||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 2264 GGGAAAATCCTTTTGACAGAAAGATTGGAACGTCGACGTAGATCAAAGTGAAGCGACATT 2323
Query 2320 GGCTATCTCTGAGATCCGCGATAA-ACTTGTTCAGTTTAAGCATCCGATGCCATCCCATA 2378
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 2324 GGCTATCTCTGAGATCCGCGA-AGCACTTGTTCAGTTTAAGCATCCGATGCCATCCCATG 2382
Query 2379 CCCACCACAAGAAGGTGATTTACATGATCACAAACAAGCCAATGCAAAG-GAAGTTGTTG 2437
||||||| |||||||||||||||||||||| |||||||||||||||| | ||||||||||
Sbjct 2383 CCCACCAGAAGAAGGTGATTTACATGATCATAAACAAGCCAATGCAA-GCGAAGTTGTTG 2441
Query 2438 TCAGTCTCTCATGAATTGTACTCCACCCCAAAGTTGAATGTTGAACTTCCATTGTATCGG 2497
||||||| |||||| ||||||||||||| |||||| |||||||||||||||| || ||||
Sbjct 2442 TCAGTCTTTCATGATTTGTACTCCACCC-AAAGTTCAATGTTGAACTTCCATAGTGTCGG 2500
Query 2498 AGTTCCTATCTTGTTTATCAAACACTTTATTTTT-GGTCTCATGAAAAGAAACACATTTA 2556
||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2501 AGTTCTTATCTTGTTTATCAAACACTTTATTTTTTGGTCTCATGAAAAGAAACACATTTA 2560
Query 2557 TTATAGAAGATTTGTATC 2574
||||||||||||||||||
Sbjct 2561 TTATAGAAGATTTGTATC 2578
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97053944260
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5