BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G17550.1
Length=2441
Score E
Sequences producing significant alignments: (Bits) Value
Ahg920676 jgi|Araly1|920676|scaffold_101957.1 2532 0.0
Ahg911565 jgi|Araly1|911565|Al_scaffold_0001_1819 1290 0.0
Ahg926642 jgi|Araly1|926642|scaffold_202203.1 981 0.0
> Ahg920676 jgi|Araly1|920676|scaffold_101957.1
Length=1588
Score = 2532 bits (1371), Expect = 0.0
Identities = 1515/1584 (96%), Gaps = 11/1584 (1%)
Strand=Plus/Plus
Query 538 GAAGCTGCATACCAGCTCATGGAAGAGATTTCACCTGCAGTTGCACTTACTTTGGGTTTA 597
||||| ||||| || |||||||||||||| ||||| ||||||||||| |||||| |||||
Sbjct 6 GAAGCAGCATAGCAACTCATGGAAGAGATCTCACCGGCAGTTGCACTGACTTTGAGTTTA 65
Query 598 GCTAATACGATGTGTGACTCTGGAATCTCATCTACTTTCGATATCTCCGAGCTGGAGAAT 657
||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||
Sbjct 66 GCTAATACGATGTGTGACTCTGGTATCTCATCCACTTTAGATATCTCCGAGCTGGAGAAT 125
Query 658 GTTACTGATGCAGCTGACATGTTGTGTAATCAGAAAAGACAAAGATATAGTAATGGAGTG 717
||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 126 GTTACTGATGCAGCTGACATGTTGTCTTATCAGAAAAGACAAAGATATAGTAATGGAGTT 185
Query 718 GTGGATTGTATTATGGGAAG-TGTTTCAGAAG----AG-A-AG---ACTTTATCTGAAGT 767
|| |||||||| ||||| || |||| |||||| || | || ||||||||| ||||
Sbjct 186 GTTGATTGTATGATGGG-AGATGTTCCAGAAGAACCAGAAGAGAAAACTTTATCTCAAGT 244
Query 768 GAGAAGTTTGTCTTCTGATTTTAGTGTAACTGTCCAGGAATCAGAAGAAGATGAGCCATT 827
|||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 245 GAGAAGCTTGTCTTCCGATTTTAGTGTAACTGTCCAAGAATCAGAAGAAGATGAGCCATT 304
Query 828 AGTATCTGATGCGACTATTATTAGCGAAGGTTTAATAGTTGTGGACGCTAGGTCTGAGAT 887
|||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 305 AGTATCTGATGCCACTATTATAAGCGAGGGTTTAATAGTTGTGGACGCTAGGTCTGAGAT 364
Query 888 AAGTTTGCCAGATACAGTTGAAACTGATAACGGGCGAGTTCTTGCTACGGCCATTATCCT 947
|||||||||||||||||||||||| |||||||| |||||||||||||| || || |||||
Sbjct 365 AAGTTTGCCAGATACAGTTGAAACAGATAACGGTCGAGTTCTTGCTACCGCGATCATCCT 424
Query 948 AAACGAGACAACCATAGAACAGGTTCCCACTGCAGAAGTCCTTATTGCGAGTCTGAATCA 1007
||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 425 AAACGAGACAACCATAGAACAGGTTCCCACTGCAGAAGTTCTTATTACGAGTCTGAATCA 484
Query 1008 CGATGTGAATATGGAGGTGGCAACTTCTGAGGTAGTCATTAGGTTACCTGAAGAAAATCC 1067
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 485 CGATGTGAATATGGAGGTGGCAACTTCTGAGGTAGTTATTAGGTTGCCTGAAGAAAATCC 544
Query 1068 TAATGTAGCAAGAGGAAGCAGGAGTGTTTATGAACTAGAGTGTATACCTCTTTGGGGCAC 1127
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 545 TAATGTAGCAAGAGGAAGCAGAAGTGTCTATGAACTAGAGTGTATACCTCTTTGGGGCAC 604
Query 1128 GATTTCAATTTGCGGTGGAAGATCTGAAATGGAGGATGCTGTTAGAGCTTTACCTCATTT 1187
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 605 GATTTCGATTTGCGGTGGAAGATCTGAAATGGAGGATGCTGTTAGAGCTTTACCTCATTT 664
Query 1188 TCTCAAAATACCCATCAAAATGCTTATGGGGGATCATGAAGGGATGAGTCCAAGTCTCCC 1247
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 665 TCTCAAGATACCCATCAAAATGCTTATGGGGGATCATGAAGGGATGAGTCCAAGTCTTCC 724
Query 1248 ATATCTCACTAGTCACTTCTTTGGTGTATATGATGGCCACGGAGGCGCTCAGGTTGCTGA 1307
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 725 ATATCTCACTAGTCACTTCTTTGGTGTATATGATGGCCACGGAGGTGCTCAGGTTGCTGA 784
Query 1308 CTATTGCCATGATAGAATCCACTCTGCTTTGGCTGAAGAAATCGAACGGATTAAAGAGGA 1367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 785 CTATTGCCATGATAGAATCCACTCTGCTTTGGCTGAAGAAATCGAACGGATTAAAGAGGA 844
Query 1368 ATTGTGTAGGAGGAACACTGGCGAGGGTAGGCAGGTCCAGTGGGAGAAAGTCTTTGTAGA 1427
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 845 ATTGTGTAGGAGGAACACTGGCGAGGGCAGGCAGGTCCAGTGGGAGAAAGTCTTTGTAGA 904
Query 1428 TTGTTACCTAAAAGTCGATGATGAGGTTAAAGGGAAAATCAACAGACCTGTTGTTGGTTC 1487
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 905 TTGTTACCTAAAGGTCGATGATGAGGTTAAAGGGAAAATCAACAGACCTGTTGTTGGTTC 964
Query 1488 TTCTGATAGGATGGTTCTTGAAGCTGTTTCCCCTGAAACCGTTGGATCGACTGCTGTGGT 1547
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 965 TTCTGATAGGATGGTTCTTGAAGCTGTTTCCCCTGAAACCGTCGGATCAACTGCTGTGGT 1024
Query 1548 TGCTTTGGTTTGTTCATCGCATATAATAGTCTCAAACTGTGGTGACTCAAGAGCAGTTTT 1607
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1025 TGCTTTGGTTTGTTCATCGCATATAATAGTCTCAAACTGTGGTGACTCTAGAGCAGTTTT 1084
Query 1608 ACTCCGAGGCAAAGACTCCATGCCTTTATCAGTTGATCACAAACCAGATAGAGAGGATGA 1667
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1085 ACTCCGAGGCAAAGACTCCATGCCTTTATCAGTTGATCACAAACCAGATAGAGAGGATGA 1144
Query 1668 GTATGCACGAATAGAGAAAGCTGGAGGAAAAGTTATACAATGGCAAGGCGCTCGTGTTTC 1727
||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1145 GTATGCAAGAATAGAAAAAGCTGGAGGAAAAGTTATACAATGGCAAGGCGCTCGTGTTTC 1204
Query 1728 TGGCGTTCTTGCCATGTCCAGGTCCATCGGTGATCAATATCTGGAGCCATTTGTAATACC 1787
|||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 1205 TGGCGTTCTTGCCATGTCCAGGTCCATCGGTGATGAATATCTGGAGCCATATGTAATACC 1264
Query 1788 AGATCCCGAAGTGACGTTTATGCCACGAGCTAGAGAAGACGAGTGTCTAATATTGGCCAG 1847
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1265 AGATCCCGAAGTGACGTTTATGCCACGAGCTAGAGAAGACGAGTGTCTTATATTGGCCAG 1324
Query 1848 TGATGGACTTTGGGACGTAATGAGTAACCAAGAAGCTTGCGATTTTGCGAGGAGGCGGAT 1907
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1325 TGATGGACTTTGGGACGTAATGAGTAACCAAGAAGCTTGTGATTTTGCGAGGAGGCGGAT 1384
Query 1908 CTTGGCTTGGCACAAGAAGAATGGAGCATTGCCTTTAGCTGAGAGAGGTGTAGGAGAAGA 1967
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 1385 CTTGGCTTGGCACAAGAAGAATGGAGCATTGCCTTTAGCCGAGAGAGGTGTAGGGGAAGA 1444
Query 1968 CCAAGCGTGTCAAGCTGCGGCTGAATATCTCTCCAAACTCGCTATTCAAATGGGAAGCAA 2027
||| ||||||||||| ||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 1445 CCATGCGTGTCAAGCCGCGGCTGAATATCTCTCCAAACTCGCTCTTCAAAAGGGAAGCAA 1504
Query 2028 AGACAATATCTCAATCATAGTGATCGACTTGAAAGCTCAAAGAAAGTTCAAGACCAGATC 2087
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1505 AGACAATATCTCAATCATAGTGGTCGACTTGAAAGCTCAAAGAAAGTTCAAGACCAGATC 1564
Query 2088 TTGAAACAGTGTATGCTCGAGCTC 2111
||||||||||||| |||| |||||
Sbjct 1565 TTGAAACAGTGTACGCTCAAGCTC 1588
> Ahg911565 jgi|Araly1|911565|Al_scaffold_0001_1819
Length=1119
Score = 1290 bits (698), Expect = 0.0
Identities = 931/1040 (90%), Gaps = 29/1040 (3%)
Strand=Plus/Plus
Query 1068 TAATGTAGCAAGAGG-A--AGCAGGAGTGTTTATGAACTAGAGTGTATACCTCTTTGGGG 1124
||||||||||||||| | || |||||||| ||||| |||||||||||||||||||||||
Sbjct 93 TAATGTAGCAAGAGGAAGGAGGAGGAGTGTCTATGAGCTAGAGTGTATACCTCTTTGGGG 152
Query 1125 CACGA-TTTCAATTTGCGGTGGAAGATCTGAAATGGAGGATGCTGTTAGAGCTTTACCTC 1183
||| | | ||||| ||||||| ||| |||||||||||||||||||||||||| |||||||
Sbjct 153 CAC-AGTGTCAATCTGCGGTGAAAGGTCTGAAATGGAGGATGCTGTTAGAGCATTACCTC 211
Query 1184 ATTTTCTCAAAATACCCATCAAAATGCTTATGGGGGATCATGAAGGGATGAGTCCAAGTC 1243
|||||||||||||||| |||| ||||||||||||||||||||||||||| | ||||| |
Sbjct 212 ATTTTCTCAAAATACCTATCAGAATGCTTATGGGGGATCATGAAGGGATTACTCCAA-CC 270
Query 1244 -TCCCATATCTCACTAGTCACTTCTTTGGTGTATATGATGGCCACGGAGGCGCTCAGGTT 1302
|| ||| ||| |||||||||||||| |||||||||||||||||| ||||| ||||||||
Sbjct 271 GTCACATGTCTTACTAGTCACTTCTTCGGTGTATATGATGGCCACAGAGGCACTCAGGTT 330
Query 1303 GCTGACTATTGCCATGATAGAATCCACTCTGCTTTGGCTGAAGAAATCGAACGGATTAAA 1362
|||||||||||||||| ||||||||| | |||||||| | | |||||||| |||
Sbjct 331 GCTGACTATTGCCATGCTAGAATCCATTTTGCTTTGG-T-------T-GAACGGATAAAA 381
Query 1363 GAGGAATTGTGTAGGAGGAACACTGGCGAG---GGTAGGCAGGTCCAGTGGGAGAAAGTC 1419
||||||||||| | |||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 382 GAGGAATTGTGCAAGAGGAACACTGGTGAGTATAGTAGGCAGGTCCAGTGGGAGAAAGTC 441
Query 1420 TTTGTAGATTGTTACCTAAAAGTCGATGATGAGGTTAAAGGGAAAATCAACAGACCTG-- 1477
|||||||||||||||||||| |||||||||||||| ||||||| ||||| |||||||
Sbjct 442 TTTGTAGATTGTTACCTAAAGGTCGATGATGAGGTCAAAGGGAGAATCAGGAGACCTGTT 501
Query 1478 T-T-G-T-TGGTTCTTCTGATAGGATGGTTCTTGAAGCTGTTTCCCCTGAAACCGTTGGA 1533
| | | | ||||||||||||||||||||||||| | |||||||||||||| ||||| |||
Sbjct 502 TCTGGTTCTGGTTCTTCTGATAGGATGGTTCTTCAGGCTGTTTCCCCTGAGACCGTAGGA 561
Query 1534 TCGACTGCTGTGGTTGCTTTGGTTTGTTCATCGCATATAATAGTCTCAAACTGTGGTGAC 1593
|| ||||||||||||||||||||||| ||||| ||||| ||||| || |||||||||||
Sbjct 562 TCAACTGCTGTGGTTGCTTTGGTTTGCTCATCACATATCATAGTTTCCAACTGTGGTGAT 621
Query 1594 TCAAGAGCAGTTTTACTCCGAGGCAAAGACTCCATGCCTTTATCAGTTGATCACAAACCA 1653
||||||| ||||||||||| |||||||| |||||||||||||| ||||||||||||||
Sbjct 622 TCAAGAGTGGTTTTACTCCGCGGCAAAGAATCCATGCCTTTATCCGTTGATCACAAACCT 681
Query 1654 GATAGAGAGGATGAGTATGCACGAATAGAGAAAGCTGGAGGAAAAGTTATACAATGGCAA 1713
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 682 GATAGAGAGGATGAGTATGCAAGAATAGAGAAAGCTGGAGGAAAAGTTATACAATGGCAA 741
Query 1714 GGCGCTCGTGTTTCTGGCGTTCTTGCCATGTCCAGGTCCATCGGTGATCAATATCTGGAG 1773
||||||||||||||||||||||| || ||||| ||||||||||||||| |||| ||||||
Sbjct 742 GGCGCTCGTGTTTCTGGCGTTCTCGCAATGTCTAGGTCCATCGGTGATGAATACCTGGAG 801
Query 1774 CCATTTGTAATACCAGATCCCGAAGTGACGTTTATGCCACGAGCTAGAGAAGACGAGTGT 1833
|||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 802 CCATATGTAATACCAGTTCCTGAAGTGACGTTTATGCCACGAGCTAGAGAAGACGAGTGT 861
Query 1834 CTAATATTGGCCAGTGATGGACTTTGGGACGTAATGAGTAACCAAGAAGCTTGCGATTTT 1893
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 862 CTTATATTGGCCAGTGATGGACTTTGGGACGTAATGAGTAACCAAGAAGCTTGCGAGTTA 921
Query 1894 GCGAGGAGGCGGATCTTGGCT-TGGCACAAGAAGAATGGAGCATTGCCTTTAGCTGAGAG 1952
|| |||| ||||||||| | |||||||||||||| ||| | ||||||||||| |||||
Sbjct 922 GCTAGGAAACGGATCTTGA-TGTGGCACAAGAAGAACGGATCTTTGCCTTTAGCCGAGAG 980
Query 1953 AGGTGTAGGAGAAGACCAAGCGTGTCAAGCTGCGGCTGAATATCTCTCCAAACTCGCTAT 2012
||||||||| |||||||| ||||||||||| ||||||| |||||||| ||||||||| |
Sbjct 981 AGGTGTAGGGGAAGACCATGCGTGTCAAGCCGCGGCTGCTTATCTCTCGAAACTCGCTCT 1040
Query 2013 TC-AAATGGGAAGCAAAGACAATATCTCAATCATAGTGATCGACTTGAAAGCTCAAAGAA 2071
|| ||| |||||||||||||||| |||| ||||||||| |||||||||||||||| ||||
Sbjct 1041 TCGAAA-GGGAAGCAAAGACAATGTCTCGATCATAGTGGTCGACTTGAAAGCTCAGAGAA 1099
Query 2072 AGTTCAAGACCAGATCTTGA 2091
||||||||||||||||||||
Sbjct 1100 AGTTCAAGACCAGATCTTGA 1119
> Ahg926642 jgi|Araly1|926642|scaffold_202203.1
Length=1584
Score = 981 bits (531), Expect = 0.0
Identities = 1033/1268 (81%), Gaps = 64/1268 (5%)
Strand=Plus/Plus
Query 863 TAGTTGTGGACGCTAGG-TCTGAGA-TAAGTTTGCCAGATACAG-T-T-GAAACT-GATA 916
||||||| || || ||| ||||| | |||| ||| | ||||||| | | |||| | ||||
Sbjct 322 TAGTTGTTGATGC-AGGCTCTGA-ATTAAGCTTGTCTGATACAGCTATGGAAA-TAGATA 378
Query 917 ACGGGCGAGTTCTTGCTACGGCCATTATCCTAAACGAGA-CAACCATAGAACAGGTTCCC 975
|||||||||| ||||| || || |||||| || ||| | ||| ||| || |||||||||
Sbjct 379 ACGGGCGAGTGCTTGCCACAGCGATTATCGTAGGCGA-ATCAAGCATCGAGCAGGTTCCC 437
Query 976 ACTGCAG-AAGTCCTTATTGCGAGTCTGAATC-----AC-GAT-GTGAATATGG---AGG 1024
||||| | |||| ||||| ||| || |||||| || || | ||| |||| |||
Sbjct 438 ACTGC-GCAAGTTCTTATCGCGGGTGTGAATCAGGATACAAATAGAGAAGATGGTCCAGG 496
Query 1025 TGGCAA---CTTCTGAGGTAGTCATTAGGTTACCTGAAGAAAATCCTAATGTAGCAAGAG 1081
| | || |||| ||||| |||||| | || || ||||||||| |||| | | | |
Sbjct 497 T-GTAACGGCTTCAGAGGTTGTCATTCGATTGCCAGAAGAAAATAGTAAT-CATCTGGTG 554
Query 1082 GAA-GCAGGAGTGTTTATGAACTAGAGTGTATACCTCTTTGGGGCACGATTTCAATTTGC 1140
|| | || ||||||||||||||||| |||||||| |||||||||||| ||||||||
Sbjct 555 AAAGGGAGAAGTGTTTATGAACTAGATTGTATACCGCTTTGGGGCACGGTTTCAATTCAA 614
Query 1141 GGTGGA-AGATCTGAAATGGAGGATGCTGTTAGAGC-T-TTACCTCATTTTCTCAAAATA 1197
||| | |||||||| |||||||||||| || | | | |||||||||||||| ||| ||
Sbjct 615 GGT-AATAGATCTGAGATGGAGGATGCT-TTTG-CCGTGTTACCTCATTTTCTGAAATTA 671
Query 1198 CCCATCAAAATGCTTATGGGGGATCATGAAGGG-ATGAGTCCAAGTCTCCCATATCTCAC 1256
|||||||||||||| |||||||| |||| |||| ||||||||||| ||| || | |||||
Sbjct 672 CCCATCAAAATGCTAATGGGGGACCATG-AGGGTATGAGTCCAAGCCTCACACACCTCAC 730
Query 1257 TAGTCACTTCTTT-GGTGTATATGATGGCCACGGAGGCGC-TCAGGTTGCTGACTATTGC 1314
|||| || ||| ||||| |||||||||||||||||| | | |||||||||||||||||
Sbjct 731 CGGTCA-TTTTTTCGGTGTTTATGATGGCCACGGAGGC-CATAAGGTTGCTGACTATTGC 788
Query 1315 C-ATGATAGAATCCACTCTGCTTTGGCTGAAGAAATCGAACGGATTAAAGAGGAATTGTG 1373
| | |||||| |||| | |||||||||||||||||| ||||| || ||||| ||||| ||
Sbjct 789 CGA-GATAGACTCCATTTTGCTTTGGCTGAAGAAATAGAACGTATAAAAGACGAATTATG 847
Query 1374 TAGGAGGAACACTGGCGAGGGTAGGCAGGTCCAGTGGGAGAAAGTCTT-TGTAGATTGTT 1432
| ||| ||||| || ||||||||||||||||||||||| |||||||| ||| |||||
Sbjct 848 CAAGAGAAACACAGGAGAGGGTAGGCAGGTCCAGTGGGATAAAGTCTTCACTAG-TTGTT 906
Query 1433 ACCTAAAAGTCGATGA-TGAGGTTAAAGGGAAAATCAACAGA-CCTGTTGTTGGTTCTTC 1490
|| | |||||| | |||| || |||| ||||| |||| || ||||||||||||||
Sbjct 907 TTCTTACCGTCGAT-AGTGAGATTGAAGGAAAAATTGGCAGAGCC-GTTGTTGGTTCTTC 964
Query 1491 TGATAGGATGGTTCTTGAAGCTGTTTCCCCTGAAACCGTTGGATCGACTGCTGTGGTTGC 1550
||||| | |||||| || |||||| || |||| ||||| ||||| ||||||||||||||
Sbjct 965 TGATA--A-GGTTCTCGAGGCTGTTGCCTCTGAGACCGTAGGATCAACTGCTGTGGTTGC 1021
Query 1551 TTTGGTTTGTTCATCGCATATAATAGTCTCAAACTGTGGTGACTCAAGAGCAGTTTTACT 1610
||||||||| ||||| |||||| |||| || ||||| ||||| ||||| || |||||| |
Sbjct 1022 TTTGGTTTGCTCATCACATATAGTAGTTTCTAACTGCGGTGATTCAAGGGCCGTTTTATT 1081
Query 1611 CCGAGGCAAAGACTCCATGCCTTTATCAGTTGATCACAAACCAGATAGAGAGGATGAGTA 1670
||| |||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 1082 CCGTGGCAAAGAAGCCATGCCCTTATCAGTTGATCACAAACCAGATAGAGAGGATGAATA 1141
Query 1671 TGCACGAATAGAGAAA-GCTGGAGGAAAAGTTATACAATGGCAAGGCGCTCGTGTTTCTG 1729
||| ||||||| ||| |||||||| ||||| ||||||||||||||||| ||||||| ||
Sbjct 1142 CGCAAGAATAGA-AAATGCTGGAGGCAAAGTCATACAATGGCAAGGCGCACGTGTTTTTG 1200
Query 1730 GCGTTCTTGCCATGTCCAGGTCCATCGGTGATCA-ATATCTGGAGCCATTTGTAATACCA 1788
| ||||| |||||||| |||||||||||||| || ||||||| |||||| ||| || |||
Sbjct 1201 GTGTTCTCGCCATGTCTAGGTCCATCGGTGA-CAGATATCTGAAGCCATATGTGATCCCA 1259
Query 1789 GATCCCGAAGTGACGTTTATGCCACGAG-CTAGAGAAGACGAGTGTCTAATATTGGCCAG 1847
|| || |||||||| || ||||| || | | ||||||||||||||||| ||| | |||||
Sbjct 1260 GAACCGGAAGTGACATTCATGCCTCG-GTCAAGAGAAGACGAGTGTCTGATACTAGCCAG 1318
Query 1848 TGATGGACTTTGGGACGTAATGAGTAACCAAGAAGCTTGCGATTTTGCGAGGAGGCGGAT 1907
||| || |||||||| |||||||| |||||||||| |||||| | || ||||| |||||
Sbjct 1319 TGACGGTCTTTGGGATGTAATGAGCAACCAAGAAGTTTGCGAAATAGCAAGGAGACGGAT 1378
Query 1908 CTTGGCT-TGGCACAAGAAGAATGGAGCATTGCCTTTAGCTGAGAGAGGTGTAGGAGA-A 1965
|||| | |||||||||||||| |||||| |||| || | |||||||| |||| | |
Sbjct 1379 CTTGA-TGTGGCACAAGAAGAACGGAGCACCGCCTCTATCAGAGAGAGGCAAAGGA-ACA 1436
Query 1966 GACCAAGCGTGTCAAGCTGCGGCTGAATATCTCTCCAAA-CTCGCTATTCAAATGGGAAG 2024
|||| ||| || ||||| |||||||| || ||||| || || ||| |||||| |||||
Sbjct 1437 GACCCAGCTTGCCAAGCCGCGGCTGACTACCTCTC-AATGCTTGCTCTTCAAAAAGGAAG 1495
Query 2025 CAAAGACAATATCTCAATCATAGTGATCGACTTGAAAGCTCAAAGAAAGTTCAAGACCAG 2084
|||||||| ||||| ||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 1496 TAAAGACAACATCTCCATCATTGTGATTGACTTGAAAGCTCAAAGAAAGTTCAAGACCAG 1555
Query 2085 ATCTTGAA 2092
| | ||||
Sbjct 1556 AACCTGAA 1563
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91987941675
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5