BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G17560.1

Length=880
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg911567 jgi|Araly1|911567|Al_scaffold_0001_1821                    420    1e-116


> Ahg911567 jgi|Araly1|911567|Al_scaffold_0001_1821
Length=552

 Score =  420 bits (227),  Expect = 1e-116
 Identities = 258/272 (95%), Gaps = 6/272 (2%)
 Strand=Plus/Plus

Query  119  ATGGCGACAGCTTTAGCTTCCAAGCTCTCC-AA--AGGACGTTCATTGCTTGGAGGTCTT  175
            ||||||||| |||||||||||| ||||||| ||  |||||||||||||||||||||||||
Sbjct  1    ATGGCGACAACTTTAGCTTCCAGGCTCTCCAAAGCAGGACGTTCATTGCTTGGAGGTCTT  60

Query  176  TGCAATGCTTTCTCTGGTTTGATGAATTCCTCCTCCAATGGAATGATGAATGGAAGCATC  235
            |||||||||||||||||||||||| | |   |||||||||||||||||||||||||||||
Sbjct  61   TGCAATGCTTTCTCTGGTTTGATG-AGT--GCCTCCAATGGAATGATGAATGGAAGCATC  117

Query  236  CTCTCTCAGCAACAACATAGGACATTCATTCAAATGGGGACGATTCTCAAATGCGTGGAT  295
            ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct  118  CTCTCTCAGCAACAACATAGGTCATTCATTCAAATGGGGACGATTCTCAAATCCGTGGAT  177

Query  296  AACTCGTGTGCTAAAGAGGTGATGTGCATTCAATCCCTGAGAGGTAAGAAAGGAGCAAGA  355
            |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct  178  AACTCGGGTGCTAAAGAGGTGATGTGCATTCAATCCCTGAAAGGTAAGAAAGGAGCAAGA  237

Query  356  CTTGGCGATATCATTGTTGGTTCAGTGAAAGA  387
            ||||||||||||||||||||||||||||||||
Sbjct  238  CTTGGCGATATCATTGTTGGTTCAGTGAAAGA  269


 Score =  409 bits (221),  Expect = 2e-113
 Identities = 270/293 (92%), Gaps = 5/293 (2%)
 Strand=Plus/Plus

Query  418  GAAAGACGCTATCCCAAAAGGTAAAGTGAAGAAAGGGATGGTCGTGTACGGTGTGGTTGT  477
            ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  264  GAAAGACGCCATACCAAAAGGTAAAGTGAAGAAAGGGATGGTCGTGTACGGTGTGGTTGT  323

Query  478  GCGTGCTGCGATGCCTAAAGGACGTGCTGATGGAAGCCAAGTCAAGTTTGATGACAATGC  537
            ||||||||||||||  |||||||||||||||||||||||||||| |||||||||||||||
Sbjct  324  GCGTGCTGCGATGCAGAAAGGACGTGCTGATGGAAGCCAAGTCAGGTTTGATGACAATGC  383

Query  538  CATTGTAGTTGTTGGCATTAAGGAAAAGAAAGGGCAGAATAATTCACATGGTTCCAAGAG  597
              |||||||||| ||||||||||||||||| |   |||| ||| |  |||||||||||||
Sbjct  384  GGTTGTAGTTGTGGGCATTAAGGAAAAGAA-GA--AGAAGAATACGGATGGTTCCAAGAG  440

Query  598  GAAAATG-GAGTACAACCAACCGACTGGTACCCGAGTGTTTGGTCCTGTCCCGCACGAGA  656
             |||||  ||||| ||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct  441  -AAAATTTGAGTATAACCAACCGACTGGTACTCGAGTGTTTGGTCCTGTCCCCCACGAGA  499

Query  657  TGCGCCTCAGGAAACAGCTCAAGATCCTTTCTTTGGCTCAGCACATTGTTTGA  709
            ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  500  TGCGCCTCAGGAAACAGCTCAAGATCCTTACTTTGGCTCAGCACATTGTTTGA  552



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 32595094035


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5