BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G17590.1
Length=1452
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471968 jgi|Araly1|471968|fgenesh2_kg.1__1922__AT1G17590.3 1679 0.0
> Ahg471968 jgi|Araly1|471968|fgenesh2_kg.1__1922__AT1G17590.3
Length=1672
Score = 1679 bits (909), Expect = 0.0
Identities = 1171/1292 (91%), Gaps = 40/1292 (3%)
Strand=Plus/Plus
Query 177 agagagagCTAATTG-TTGCCTCTGAGTCACATGGATAAGAAAGTTTCATTTACTAGCTC 235
||||||||||||||| |||||||||||||||||||| ||||||| || || | |
Sbjct 404 AGAGAGAGCTAATTGTTTGCCTCTGAGTCACATGGAAAAGAAAG-----GTT-CT-G--C 454
Query 236 TGTGGCACATTCAACTCCACCATACCTTAGTACTTCCATCTCATGGGGACTTCCAACCAA 295
||||||| |||||||| ||| | ||| ||||||||||||||||||||| ||||| |
Sbjct 455 ---GGCACATGCAACTCCATCATTCGTTAACACTTCCATCTCATGGGGACTTTCAACCGA 511
Query 296 ATCCAA--T-GG-TGTGACTGAATCACTGAGTTTGAAGGTGGTAGATGCAAGACCAGAAC 351
||| || | || || ||| | | || ||||||| ||||||||||||||||||||
Sbjct 512 ATCGAATGTCGGCGGT-TCTG-CT-A-TGCGTTTGAA---GGTAGATGCAAGACCAGAAC 564
Query 352 GTCTTATAAACACAAAGAATATCAGTTTCCAGGACCAGGATTCATCTTCAACTCTGTCCT 411
||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 565 GTCTTTTAAACACAAATAATTTCAGTTTCCAGGACCAGGATTCATCTTCAACTCTGTCCA 624
Query 412 CTGCTCAATCTTCTAACGATGTTACAAGTAGTGGAGATGATAACCCCTCAAGACAAATCT 471
||||||||||||||| | ||||| | | ||||||||||||| ||||||| ||||| ||||
Sbjct 625 CTGCTCAATCTTCTACCCATGTTGCTACTAGTGGAGATGATGACCCCTCCAGACATATCT 684
Query 472 CATTTTTAGCACATTCAGATGTTTGTAAAGGATTTGAAGAAACTCAAAGGAAGCGATTTG 531
|||||| ||||||||| ||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 685 CATTTTCAGCACATTCTGATATTTGTAAAGGATTTGAAGAAACTCAAAGGAAGCAATTTG 744
Query 532 -----CA-ATTAAATCAGGCTCCTCCACGGCAGGAATCGCTGATATTCACTCTTCTCCTT 585
|| ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 745 CAAATCATATTAAATCAGGCTCCTCCACGGCAGGAATCGCTGATATTCACTTTTCTCCTT 804
Query 586 CCAAGGCTAACTTCTCATTTCACTATGCCGATCCACATTTTGGTGGTTTAATGCCTGCGG 645
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 805 CCAAGGCTAACTTCTCATTTCACTATGCCGATCCACATTTTGGTGGTGTAATGCCTGCGG 864
Query 646 CTTACCTACCACAGGCAACAATATGGAATCCCCAAA---TGACTCGAGTTCCGCTACCAT 702
||||||||| |||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 865 CTTACCTACAACAGGCAACAATATGGAATCCCCAAATGGTGAGTCGAGTTCCGCTACCAT 924
Query 703 TCGATCTCATAGAGAATGAGCCTGTCTTTGTCAATGCAAAGCAATTCCATGCAATTATGA 762
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 925 TCGACCTCATAGAAAATGAGCCTGTCTTTGTCAATGCAAAGCAATTCCATGCAATTATGA 984
Query 763 GGAGGAGGCAACAGCGTGCTAAGCTAGAGGCGCAAAACAAACTAATCAAAGCCCGTAAGC 822
||||||||||||| ||||| ||||||||||||||||||||| |||||| |||||||||||
Sbjct 985 GGAGGAGGCAACAACGTGCAAAGCTAGAGGCGCAAAACAAATTAATCAGAGCCCGTAAGC 1044
Query 823 CGTATCTTCATGAATCTCGACATGTTCACGCTCTTAAACGACCTAGAGGATCTGGTGGAA 882
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1045 CGTATCTTCATGAATCTCGACATGTTCACGCTCTTAAACGACCTAGAGGATCTGGTGGAA 1104
Query 883 GATTCCTAAACACCAAAAAGCTTCAAGAATCTACAGATCCAAAACAAGACATGCCAATCC 942
||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1105 GATTCCTAAACACCAGAAAGCTTCAAGAATCTACAGACCCAAAACAAGACATGCCAATCC 1164
Query 943 AACAGCAACACGCAACGGGAAACATGTCAAGATTTGTG-CTTTATCAGTTGCAGAACAGC 1001
||||||||||||||| ||||||||||||| |||| ||| || | ||| |||||| ||||
Sbjct 1165 AACAGCAACACGCAAAGGGAAACATGTCACGATTCGTGGCTC-ACCAGCTGCAGACCAGC 1223
Query 1002 AATGACTGTGATTGTTCAACCACTTCTCGCTCTGACATCACATCTGCTTCTGACAGCGTT 1061
|| ||| ||| |||||||||||||||| ||||||||||||| |||||||||||| |||||
Sbjct 1224 AAGGACCGTGGTTGTTCAACCACTTCTGGCTCTGACATCACCTCTGCTTCTGACGGCGTT 1283
Query 1062 AATCTCTTTGGACACTCTGAATTTCTGATATCAGATTGCCCATCTCAGACAAACCCAACA 1121
|||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct 1284 GATCTCTTTGGACACTCTGAATTTCAGATATCAGATCACCCATCTCAGACAAACCCAACA 1343
Query 1122 ATGTATGTTCATGGTCAATCAAATGACATGCATGGAGGTAGGAACACACACCATTTCTCT 1181
||||||||||||||||||||||||||||||||||||||| ||||||| || |||||||||
Sbjct 1344 ATGTATGTTCATGGTCAATCAAATGACATGCATGGAGGTGGGAACACTCATCATTTCTCT 1403
Query 1182 GTCCATATCTGAGCCGGTGGAATCTGGTAATGTGTACGTTCCTACaaaaaaaGGGAAGTC 1241
||||||||||||| | ||||||| |||| ||||||| |||| |||||||||||||||||
Sbjct 1404 GTCCATATCTGAGACAGTGGAATTTGGTGATGTGTATTTTCCCACAAAAAAAGGGAAGTC 1463
Query 1242 ATCCTTGGCTGCTACTTCGCTTA-TTAGCTAGTTCTTATTTCACACGCTTTGTCCAGATA 1300
||||||||||||||| ||||| | || |||||||||||||||| ||||||||||||||||
Sbjct 1464 ATCCTTGGCTGCTACCTCGCT-ACTTCGCTAGTTCTTATTTCAAACGCTTTGTCCAGATA 1522
Query 1301 TCATTTGAATGACCAAAAACCTTCAAGCTTCAACTCTTTACTTTTCGTCTGTCGTTTGTA 1360
|||||||||||||||||| ||||||||||||||||||||| || ||||||||||||||||
Sbjct 1523 TCATTTGAATGACCAAAA-CCTTCAAGCTTCAACTCTTTAGTTCTCGTCTGTCGTTTGTA 1581
Query 1361 CCATGGATCATCGTGTGTTAAGTCAGTGATTGGATTGGAGTGATGAATGTAAATGTAAAT 1420
|||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 1582 CCATGGATCATCGTGTGTTAAGTCAGTGATTGGATTGGAGTGTTAAATGTAAATGTAAAT 1641
Query 1421 CTGA-TAACCGATAAGTCTCTGCTCTTTGCTT 1451
| | || | | ||||||||||||||||||||
Sbjct 1642 GTAAATA-CTGTTAAGTCTCTGCTCTTTGCTT 1672
Score = 108 bits (58), Expect = 1e-22
Identities = 115/140 (82%), Gaps = 13/140 (9%)
Strand=Plus/Plus
Query 10 ATacacacacacaca-tacacacTGTT-GAGTATCTATCTGAGAGAATAAGCAAAAGAGA 67
||||||||||||||| | ||| ||||| | | ||||||||||||||||||||||||||||
Sbjct 40 ATACACACACACACACT-CACGCTGTTGGGGAATCTATCTGAGAGAATAAGCAAAAGAGA 98
Query 68 AAAGA-GATTTA-CTTTGTTTTGAT-A-G--GCATCCC-T--TGAGTTCCTGTTCTTCAT 118
||| | |||||| ||| |||||||| | | | | | | |||||| | ||||| |||
Sbjct 99 AAAAAAGATTTAACTT-GTTTTGATGATGTAGAAAGGCATGCTGAGTTACGGTTCTCCAT 157
Query 119 CTCTTCCTTGAATCCGTAAG 138
|||||||| |||||||||||
Sbjct 158 CTCTTCCTCGAATCCGTAAG 177
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54316689370
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5