BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G17600.1
Length=3332
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471969 jgi|Araly1|471969|fgenesh2_kg.1__1923__AT1G17600.1 3256 0.0
Ahg947767 jgi|Araly1|947767|scaffold_703996.1 989 0.0
Ahg908894 jgi|Araly1|908894|Al_scaffold_0002_1975 283 5e-75
Ahg908896 jgi|Araly1|908896|Al_scaffold_0002_1977 147 7e-34
> Ahg471969 jgi|Araly1|471969|fgenesh2_kg.1__1923__AT1G17600.1
Length=2892
Score = 3256 bits (1763), Expect = 0.0
Identities = 1964/2061 (95%), Gaps = 13/2061 (1%)
Strand=Plus/Plus
Query 93 ATGGTGTCCTCCTCTGCACCTCGTGTATCGAAGTACGACGTCTTCCTCAGCTTCCGTGGA 152
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1 ATGGCGTCCTCCTCTGCACCTCGTGTATCGAAGTACGACGTCTTCCTCAGCTTCCGAGGA 60
Query 153 GAAGACACCCGCAAAACCATCGTCAGTCATTTATATGCAGCACTTGATAGCAGAGGCATT 212
||||||||||| ||||| ||||| ||||||||||| |||||||||||||||||||| |||
Sbjct 61 GAAGACACCCGAAAAACAATCGTTAGTCATTTATACGCAGCACTTGATAGCAGAGGAATT 120
Query 213 GTTACTTTCAAAGATGACCAAAGGCTTGAGATAGGCGATCACATTTCCGATGAACTCCAC 272
|||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||| |
Sbjct 121 GTTACTTTCAAAGACGACCAAAGGCTTGAGATAGGAGATCACATTTCTGATGAACTCCGC 180
Query 273 AGAGCACTAGGGAGTTCGAGTTTCGCTGTTGTTGTTCTCTCCGAGAACTACGCTACTTCG 332
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 181 AGAGCACTAGGGAGTTCGAGTTTCGCTGTTGTGGTTCTCTCCGAGAACTACGCTACTTCC 240
Query 333 AGATGGTGCTTATTGGAACTTCAACTGATAATGGAGCTTATGAAGGAGGGAAGACTTGAA 392
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 241 AGGTGGTGCTTATTGGAACTTCAACTGATAATGGAGCTTATGAAAGAGGGAAGACTTGAA 300
Query 393 GTCTTTCCCATCTTCTATGGAGTAGATCCTTCCGTGGTGAGGCATCAGCTAGGAAGTTTC 452
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GTATTTCCCATCTTCTATGGAGTAGATCCTTCCGTGGTGAGGCATCAGCTAGGAAGTTTC 360
Query 453 TCTTTAGTAAAGTACCAAGGTCTTGAAATGGTGGATAAGGTTCTCAGGTGGAGAGAAGCT 512
|||||| |||||| ||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 361 GCTTTAGAAAAGTATCAAGGTCCTGAAATGGCGGATAAGGTTCTCAGGTGGAGAGAAGCT 420
Query 513 CTTAACCTAATCGCCAATCTTTCAGGCGTGGTTTCAAGCCACTGTGTTGATGAGGCTATA 572
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 421 CTTAACCTAATCGCCAATCTTTCAGGCGTGGTTTCAAGCCACTGCGTTGATGAGGCTATA 480
Query 573 ATGGTTGGAGAAATTGCTAGAGATATTTCAAGACGTGTGACATTGATGCATAAAATAGAC 632
||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct 481 ATGGTTGGAGAAATTGCCAGAGATATTTCAAGACGTGTGACATTGTTGCATAAAATAGAC 540
Query 633 TCTGGAAATATTGTTGGGATGAAAGCTCACATGGAAGGTCTTAATCATCTCTTGGATCAG 692
||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 541 TCTGGCAATATTGTTGGGATGAAAGCTCACATGGAAGGTCTTAATCATCGCTTGGATCTG 600
Query 693 GAATCCAATGAGGTTCTCCTGGTAGGAATCTGGGGAATGGGAGGAATTGGGAAAACCTCC 752
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GAATCCAATGAGGTTCTCATGGTAGGAATCTGGGGAATGGGAGGAATTGGGAAAACCTCC 660
Query 753 ATTGTTAAGTGTCTCTATGACCAGCTCTCACCTAAATTTCCAGCTCATTGTTTCATAGAA 812
|||| ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 661 ATTGCTAAGTGTCTCTATGACCAGCTTTCACCTAAATTTCCAGCTCATTGTTTCACAGAA 720
Query 813 AACATTAAGAGTGTTAGTAAAGACAATGGCCATGATCTAAAGCATTTGCAAAAAGAATTG 872
||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||| ||
Sbjct 721 AACATTAAGAGTGTTAGTAAAGATATTGGCCATGATCTAAAGCGTTTGCAAAAAGAAATG 780
Query 873 CTCTCCAGTATCCTCTGTGATGATATTAGGTTATGGAGCGTGGAAGCTGGATGCCAAGAG 932
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 CTCTGCAATATCCTCTGTGATGATATTAGGTTATGGAGCGTGGAAGCTGGATGCCAAGAG 840
Query 933 ATAAAAAAGAGACTTGGGAATCAAAAGGTTTTTCTTGTGCTTGATGGTGTGGATAAAGTG 992
||||| ||||||||||||||||| | |||||||||||||||||| |||||||||||||||
Sbjct 841 ATAAAGAAGAGACTTGGGAATCAGAGGGTTTTTCTTGTGCTTGACGGTGTGGATAAAGTG 900
Query 993 GCGCAGGTGCATGCTTTGGCAAAAGAGAAAAACTGGTTTGGTCCTGGGAGCCGAATTATC 1052
| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 901 TCACAGGTGCATGCTTTGGCAAAAGATAAAAACTGGTTTGGTCCTGGGAGCCGAATTATC 960
Query 1053 ATAACCACTCGAGATATGGGCTTGCTCAATACCTGTGGAGTAGAAGTCGTTTATGAGGTT 1112
||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 961 ATAACTACTCGAGATATGGGCTTGCTCAATACCTGTGGAGTAGAAATCGTTTATGAGGTT 1020
Query 1113 AAGTGCTTGGATGATAAGGATGCCCTCCAGATGTTTAAACAGATTGCTTTTGAAGGAGGA 1172
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1021 AAGTGCTTGGATGATAAGGATGCCCTCCACATGTTTAAACAGATTGCTTTTGAAGGAGGA 1080
Query 1173 CTTCCTCCTTGTGAGGGTTTTGACCAACTCTCAATCCGAGCTTCTAAGCTTGCTCACGGG 1232
|||||||| ||| ||||||| ||||||||| ||||||||||| |||||||||||||
Sbjct 1081 CTTCCTCC---TGATAGTTTTGAGCAACTCTCACTCCGAGCTTCTCGGCTTGCTCACGGG 1137
Query 1233 CTTCCTTCTGCCATTCAAGCCTATGCATTATTTCTCCGTGGAAGGACAGCGAGTCCTGA- 1291
|||||||||||||||||||| ||||| |||||||||||||||||||| |||| ||||||
Sbjct 1138 CTTCCTTCTGCCATTCAAGCTTATGCCTTATTTCTCCGTGGAAGGACCGCGACTCCTGAT 1197
Query 1292 GGAGTGGGAAGAAGCACTGGGTGCACTTGAAAGCAGTCTTGACGAGAATATAATGGAAAT 1351
|| ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 GG-GTGGGAAGAAGCATTGAGTGCACTTGAAAGCAGTCTTGACGAGAATATAATGGAAAT 1256
Query 1352 CTTGAAAATTAGCTACGAGGGCTTACCAAAACCACATCAGAATGTATTCCTTCATGTTGT 1411
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1257 CTTGAAAATCAGCTACGAGGGCTTACCAAAACCACATCAGAATGTATTCCTTCATGTTGT 1316
Query 1412 CTGTCTCTTCAATGGAGACACTCTCCAGCGAATCACTTCCCTTCTTCATGGCCCCATACC 1471
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1317 CTGTCTCTTCAATGGAGACACTCTCCAGCGTATCACTTCCCTTCTTCATGGCCCCATACC 1376
Query 1472 TCAGAGCAGCCTGTGGATAAGAGTTTTAGCAGAGAAATCTCTCATCAAAATATCAACTAA 1531
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1377 TCAGAGTAGCCTGTGGATAAGAGTTTTAGCAGAGAAATCTCTCATCAAAATATCAACTAA 1436
Query 1532 TGGATCTGTTATCATGCACAAGTTGGTCGAACAAATGGGAAGAGAAATTATCCGCGACGA 1591
||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||| |
Sbjct 1437 TGGATCTGTAATCATGCACAAGTTGGTAGAACAAATGGGTAGAGAAATTATCCGCGACAA 1496
Query 1592 CATGTCTTTGGCTCGAAAGTTCCTCAGGGATCCTATGGAAATTCGCGTTGCCCTGGCTTT 1651
||||||||||||||||| |||||||||||||||||||||||||| | |||| |||||||
Sbjct 1497 TATGTCTTTGGCTCGAAAATTCCTCAGGGATCCTATGGAAATTCGTGATGCCTTGGCTTT 1556
Query 1652 CAGAGACGGAGGAGAACAAACTGAATGCATGTGCCTACACACGTGTGA-TATGACCTGTG 1710
|||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 1557 CAGAGACGCAGGAGAACAAACTGAATGCATGTGCCTACACACGTGTGAGT-TGACCTGTG 1615
Query 1711 TGTTATCCATGGAGGCCAGTGTTGTTGGCCGTATGCATAATCTCAAGTTTCTCAAGGTTT 1770
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1616 TGTTGTCCATGGAGGCCAGTGTTGTTGGCCGTATGCATAATCTCAAGTTTCTCAAGGTTT 1675
Query 1771 ACAAGCATGTAGATTACAGAGAGTCGAATCTGCAACTCATTCCAGACCAACCGTTCCTGC 1830
|||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct 1676 ACAAGCATGTAGATTACAGAGAGTCGAAGCTGCAACTCATTCCAGACCAACAGTTCCTGC 1735
Query 1831 CTCGTAGCCTACGGCTATTCCATTGGGATGCATTTCCATTGAGAGCCCTGCCTTCCGGTT 1890
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1736 CTCGTAGCCTACGGCTATTCCATTGGGATGCATTTCCATTGAGAGCCCTGCCTTCCGGCT 1795
Query 1891 CTGATCCATGTTTTCTTGTTGAACTCAATCTGCGTCACAGTGATTTAGAAACTCTCTGGA 1950
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1796 CTGATCCATGTTTTCTTGTTGAACTCAATCTGCGTCACAGTGATTTAGAAACTCTCAGGA 1855
Query 1951 GTGGAACACCGATGTTGAAGAGTTTGAAGAGACTAGATGTGACGGGATCTAAGCATCTCA 2010
| | | ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1856 CTTGTA------TGTTGAAGAGTTTGAAGAGACTAGATGTGACGGGATCTAAGTATCTCA 1909
Query 2011 AGCAACTTCCAGATCTTTCAAGTATCACGAGTCTTGAGGAATTGCTTCTGGAACAATGCA 2070
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1910 AGCAACTTCCAGATCTTTCAAGTATCACGAGTCTTGAGGAATTGCTTCTGGAACAATGCA 1969
Query 2071 CGAGACTGGAGGGCATTCCAGAGTGTATTGGAAAAAGGTCTACCTTAAAGAAGCTTAAGC 2130
|||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1970 CGAGACTGGATGGCATTCCAGAGTGTATTGGAAAAAGGTCTACCCTAAAGAAGCTTAAGC 2029
Query 2131 TATCCTACCGTGGAGGGCGTA 2151
||||||||||||| |||||||
Sbjct 2030 TATCCTACCGTGGTGGGCGTA 2050
Score = 808 bits (437), Expect = 0.0
Identities = 491/518 (95%), Gaps = 0/518 (0%)
Strand=Plus/Plus
Query 2189 GCAGCAACATATTGGATTGGAGTTCCCAGACGCAAAAGTGAAAATGGATGCACTTATAAA 2248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2055 GCAGCAACATATTGGATTGGAGTTCCCAGACGCAAAAGTGAAAATGGATGCACTTATAAA 2114
Query 2249 CATATCGATTGGGGGAGACATTACTTTTGAGTTTCGTTCAAAATTTAGAGGATATGCTGA 2308
|||||||||||| |||||||| | |||||||||| | |||||||||||||||||||||||
Sbjct 2115 CATATCGATTGGTGGAGACATAAGTTTTGAGTTTTGCTCAAAATTTAGAGGATATGCTGA 2174
Query 2309 ATACGTCTCTTTTAATTCTGAGCAACAGATACCCATTATATCGGCGATGAGTCTGCAACA 2368
|||||||||||| |||||||||||||||||||| |||||||| |||||| |||||||||
Sbjct 2175 ATACGTCTCTTTCAATTCTGAGCAACAGATACCTGTTATATCGACGATGATTCTGCAACA 2234
Query 2369 AGCACCTTGGGTCATCTCAGAGTGCAACAGATTCAATTCCCTCCGCATCATGAGGTTCAG 2428
||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct 2235 AGCACCTTGGGTCATCTCAGAGTGCAATAGATTCAATTCCCTCAGCATCATGAGGTTCAG 2294
Query 2429 CCACAAAGAAAACGGTGAATCTTTCTCCTTTGACGTCTTTCCAGATTTTCCCGACCTGAA 2488
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2295 CCACAAAGAAAACGGTGAATCTTTCTCCTTTGACATCTTTCCAGATTTTCCCGACCTGAA 2354
Query 2489 AGAGCTAAAACTAGTGAACTTAAACATCAGGAAAATCCCATCTGGGATTTGTCACCTGGA 2548
|||||| ||||||||||||||||||||| ||| |||||||||||||||||||||| ||||
Sbjct 2355 AGAGCTTAAACTAGTGAACTTAAACATCCGGAGAATCCCATCTGGGATTTGTCACTTGGA 2414
Query 2549 TTTACTAGAGAAGCTGGACCTCAGCGGAAATGATTTTGAGAACTTACCAGAAGCTATGAG 2608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2415 GTTACTAGAGAAGCTGGACCTCAGCGGAAATGATTTTGAGAACTTACCAGAAGCTATGAA 2474
Query 2609 TAGCCTTTCCCGGTTAAAAACTCTCTGGCTTCAAAACTGCTTTAAGCTCCAGGAGTTGCC 2668
|||||||||||| | |||||||||||||||| ||||||||| || ||| ||||||||||
Sbjct 2475 CAGCCTTTCCCGGCTGAAAACTCTCTGGCTTCGAAACTGCTTCAAACTCGAGGAGTTGCC 2534
Query 2669 AAAGCTAACTCAGGTGCAGACACTTACACTTACCAACT 2706
|||||||||||||||||||||||| |||||||||||||
Sbjct 2535 AAAGCTAACTCAGGTGCAGACACTGACACTTACCAACT 2572
Score = 318 bits (172), Expect = 1e-85
Identities = 268/309 (87%), Gaps = 28/309 (9%)
Strand=Plus/Plus
Query 2747 TCAAGATGAGGGAAGATACTGTTTGCTTGAGCTTTGCCTTGAAAATTGCAAGAGTGTTGA 2806
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2573 TCAAGATGAGGGAAGATACTGTTTGCTTGAGCTTTGCCTTGAAAACTGCAAGAGTGTTGA 2632
Query 2807 ATCATTGTCAGATCAGCTTAGTCATTTCACCAAGTTGACATGTTTAGATCTCAGCAACCA 2866
||||||||||||| | || | || || | |||| || ||| |||
Sbjct 2633 ATCATTGTCAGAT---C--AG-C--TT-----AG-T--CATG---AG----CAG---CCA 2666
Query 2867 TGATTTTGAGACATTGCCATCAAGCATCAGAGATCTTACCTCATTGGTAACACTTTGCCT 2926
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2667 TGATTTTGAGACATTGCCACCAAGCATCAGAGATCTTACCTCATTGGTAACACTTTGCCT 2726
Query 2927 CAATAACTGCAAGAAACTCAAATCGGTGGAAA-AACTTCCCTTGTCTCTCCAATTTCTCG 2985
||||||||||||||||||||||| ||||||| || | ||| ||||||||||||||| |
Sbjct 2727 TAATAACTGCAAGAAACTCAAATCAGTGGAAAGAA-TCCCCACGTCTCTCCAATTTCTGG 2785
Query 2986 ATGCACACGGCTGTGATTCTCTCGAAGCTGGTTCTGCAGAACATTTTGAGGACATACCAA 3045
||||||||||||||||||| ||||||||||||| || |||||||||| ||||||||||||
Sbjct 2786 ATGCACACGGCTGTGATTCCCTCGAAGCTGGTTGTGTAGAACATTTTAAGGACATACCAA 2845
Query 3046 ACAAGGAGG 3054
|||| ||||
Sbjct 2846 ACAAAGAGG 2854
> Ahg947767 jgi|Araly1|947767|scaffold_703996.1
Length=3002
Score = 989 bits (535), Expect = 0.0
Identities = 1109/1377 (81%), Gaps = 75/1377 (5%)
Strand=Plus/Plus
Query 83 TTTTTCAACAATGG-TGTCCTCCTCTGCACCTCGTGTATCGAAGTACGACGTCTTCCTCA 141
|||||| ||||||| | ||||| ||||| |||||| ||| || || || |||||||| |
Sbjct 16 TTTTTCGACAATGGCT-TCCTCATCTGCTTCTCGTGCATCCAACTATGATGTCTTCCTAA 74
Query 142 GCTTCCGTGGAGAAGACACCCGCA-AAACCATCGTCAGTCATTTATATGCAGCACTTGA- 199
| |||||||| |||||||| || | | | |||||||| ||||| || | ||||||| |
Sbjct 75 GTTTCCGTGGGGAAGACACTCG-ACATTCTATCGTCAGCCATTTGTACGAAGCACTT-AC 132
Query 200 TAGCAGAGGCATTGTTACTTTCAAAGATGACCAAAGGCTTGAGATAGGCGATCACATTTC 259
|||||||| |||| ||| |||||||| ||| ||||||||||| ||||||||||||||||
Sbjct 133 CAGCAGAGGAATTGCTACATTCAAAGACGACAAAAGGCTTGAGCTAGGCGATCACATTTC 192
Query 260 CGATGAACTCCACAGAG-CACTAG-GGAGTTCGAG-TTTCGCTGTTGTTGTTCTCTCCGA 316
|| |||||||| |||| || | | || |||| || ||||||||| || |||||||| ||
Sbjct 193 TGAAGAACTCCAAAGAGCCA-TTGAGG-GTTC-AGATTTCGCTGTCGTGGTTCTCTCAGA 249
Query 317 GAACTACGCTACTTCGAGATGGTGCTTATTGGAACTTCAACT-GATAATGGAGCTT-ATG 374
||||||| ||||||| || ||||||||| |||| || ||| | ||||||| ||||| | |
Sbjct 250 GAACTACCCTACTTCTAGGTGGTGCTTAATGGAGCTCCAA-TCGATAATGAAGCTTCA-G 307
Query 375 AAGGAGGGAAGACTTGAAGTCTTTCCCATCTTCTATGGAGTAGATCCTTCCGTGGTGAGG 434
|||||||||||||| ||||||||| ||||||| | ||||| || || | ||||||
Sbjct 308 GTGGAGGGAAGACTTGGTGTCTTTCCCGTCTTCTACAGTGTAGAACCCTCTGCCGTGAGG 367
Query 435 CATCAGCTAGGAAGTTTC--TCTTTAGTAA-AGTACCAA-G-G-TCTTGAAA-TGGTGGA 487
||||||||||||||||| || || | || |||||||| | | || ||| ||| |||
Sbjct 368 TATCAGCTAGGAAGTTTCGATC-TT-G-AAGAGTACCAACGTGATC-CAAAACTGGCGGA 423
Query 488 TAAGGTTCTCAGGTGGAGAGAAGCTCTTAACCTAATCGCCAATCTTTCAGGCGTGGTTTC 547
| ||||| || ||||||| |||||||||| || || || ||||||||||||||| ||
Sbjct 424 TGTGGTTCCCAAGTGGAGACAAGCTCTTAAACTGATTGCTGATCTTTCAGGCGTGGCATC 483
Query 548 AAGCCACTGTGTTGATGAGGCTA-TAATGGTT-GGAGAAATTGCTAG-AGATATTTCAAG 604
| || || |||||||||| | | |||||| ||| |||||| | | ||||||||||||
Sbjct 484 CGGACAGTGCATTGATGAGGCAACT-ATGGTTCGGA-AAATTG-TCGAAGATATTTCAAG 540
Query 605 ACGTGTGACATTGATGCATAAAATAGAC-TCTGGAAATATTGTTGGGAT-GAAAGCTCAC 662
|| |||||||| |||||| |||||| || |||||||||||||| | || | |||||
Sbjct 541 GCGCAAGACATTGAAGCATAAGATAGACTTC-AGAAATATTGTTGGGGTGGATA-CTCAC 598
Query 663 ATGGAAGGTCTTAATCAT-CTCTTGGATCA-GGAATCC----A--ATGAGGTTC-TCCTG 713
||| ||||||| || | |||||||| || ||| ||| | ||||||||| | ||
Sbjct 599 ATGCAAGGTCTCAA-GTTGCTCTTGGA-CATGGACTCCAATAATGATGAGGTTCGT-ATG 655
Query 714 GTAGGAATCTGGGGAATGGGAGGAATTGGGAAAACCTCCATTGTTAAGTGTCTCTATGAC 773
| |||||||||||||||||||| ||||| |||||| |||| | |||||||| ||||||
Sbjct 656 ATTGGAATCTGGGGAATGGGAGGCATTGGAAAAACCACCATCGCCAAGTGTCTTTATGAC 715
Query 774 CAGCTCTCACCTAAATTTCCAGCTCA-TTGTTTCATAGAAAACATTAAGAGTGTTAGTAA 832
||||||||| || ||||| || || | || ||||| | || |||||||| | | || |
Sbjct 716 CAGCTCTCATCTCAATTTACAACT-AGTTATTTCACACAAGACATTAAG-G-G-TA-TTC 770
Query 833 AGACAATGGCCATGATCTAAAGCATTTGCAAAA-AGAA-TTGCTCTCCAGTATCCTCT-G 889
| | || | || ||||||| |||||||||||| | || || |||| || || ||| | |
Sbjct 771 ATA-AA-GACCTTGATCTACTGCATTTGCAAAACA-AACTT-CTCTACAATACCCT-TGG 825
Query 890 TGATGATATTAGGTTATGGAGCGTGGAAGCTGGATGCCAAGAGATA-AAAAAGAGACTTG 948
||||||||||||| |||||||||||||||||| || | | ||| | |||||||
Sbjct 826 TGATGATATTAGGCCGTGGAGCGTGGAAGCTGGACGCGAGGTCATAGCGTCA-AGACTTG 884
Query 949 GGAATCAAAAGGTTTTTCTTGTGCTTGATGGTGTGGATAAAGTGGCGCAGGTGCATGCTT 1008
|||| || |||||| ||||||| |||||||||||||||||| |||| ||| | ||||||
Sbjct 885 GGAACCACAAGGTTCTTCTTGTACTTGATGGTGTGGATAAATTGGCCCAGATCCATGCTC 944
Query 1009 TGGCAAAAGAGA-AAAACTGGTTTGGTCCTGGGAGCCGAATTATCATAACCACTCGAGAT 1067
|||||||||||| | |||||||||| | ||||||||| ||||||||||| ||||||
Sbjct 945 TGGCAAAAGAGACGGGA-TGGTTTGGTCGTCAGAGCCGAATCATCATAACCACCCGAGAT 1003
Query 1068 ATGGGCTTGCTCAATACCTGTGGAGTAGAAGTCGTTTATGAGGTTAAGTGCTTGGATGAT 1127
| |||||||||||||| ||||||||| || | ||||||| ||||| |||||||| |||
Sbjct 1004 AAGGGCTTGCTCAATAGTTGTGGAGTAAAAACCATTTATGATGTTAAATGCTTGGACGAT 1063
Query 1128 AAGGATGCCCTCCAGATGTTTAAACAGATTGCTTTTGAAGGAGGAC-TTCCTCCTTGTGA 1186
|||||| || | |||||||||||||||||||||||||||||||| | |||||||| ||
Sbjct 1064 AAGGATTCCTTGCAGATGTTTAAACAGATTGCTTTTGAAGGAGG-CAGTCCTCCTTCTGT 1122
Query 1187 GGGTTTTGACCAACTCTCAATCCGAGCTTCTAAGCTTGCTCACGGGCTTCCTTCTGCCAT 1246
| |||||| ||||||||||||||||| || ||||||||||||||||||||||||| |
Sbjct 1123 TGATTTTGAACAACTCTCAATCCGAGCAGCTCGGCTTGCTCACGGGCTTCCTTCTGCCCT 1182
Query 1247 TCAAGCCTATGCATTATTTCTCCGTGGAA-GGACAGCGAGTCCTGAGGAGTGGGAAGAAG 1305
|||||||||||| ||||||||||| ||| || || | ||||||||| ||||||||||
Sbjct 1183 TCAAGCCTATGCCTTATTTCTCCGCAGAAGGGCCAAC-TCTCCTGAGGAATGGGAAGAAG 1241
Query 1306 CACTGGGTGCACTTGAAAGCAGTCTTGACGAGAATATAATGGAAATCTTGAAAATTAGCT 1365
|| | ||| ||||||||| | || |||||| ||||||||||||||||||||||||||||
Sbjct 1242 CAGTATGTGGACTTGAAAGTACTCCTGACGACAATATAATGGAAATCTTGAAAATTAGCT 1301
Query 1366 ACGAGGGCTTACCAAAACCACATCAGAATG-TATTCCTTCATGTTGTC-TGTCTCTT 1420
||||||||||| ||||| |||||||||||| | ||| | ||||||| | ||||||||
Sbjct 1302 ACGAGGGCTTAGCAAAAGCACATCAGAATGCTTTTC-TCCATGTTG-CATGTCTCTT 1356
Score = 501 bits (271), Expect = 1e-140
Identities = 658/839 (78%), Gaps = 49/839 (6%)
Strand=Plus/Plus
Query 1973 TTTGAAGAGACTAGATGTGACGGGATCTAAGCATCTCAAGCAACTTCCAGATCTTTCAAG 2032
|||||||| |||||||||||||||||||||| ||||||| |||||||||||||||||| |
Sbjct 1804 TTTGAAGAAACTAGATGTGACGGGATCTAAGAATCTCAAACAACTTCCAGATCTTTCATG 1863
Query 2033 T-ATCACG-AGTCTTGAGGAATTGCTTCTGGAACAATGCACGAGACTGGAGGGCATTCCA 2090
| | || | || ||||| || ||| |||| |||||||||| |||||| | || ||||||
Sbjct 1864 TAACCA-GAAG-CTTGACGAGTTGATTCTAGAACAATGCAAGAGACTAAAAGGAATTCCA 1921
Query 2091 GAGTGTATTGGAAAAAGGTCTACCTTAAAG-AAGCTTAAGCTATCCTACCGTGGAGGGCG 2149
|||| |||||| ||||||||||||| | | | |||||| ||||| ||| || ||||
Sbjct 1922 GAGTCAATTGGAGAAAGGTCTACCTT-AGGCAGGCTTAACCTATCATACTACGGTGGGCC 1980
Query 2150 T-AGAAGTGCCC-TGCGGT-TTTTTCTAC-GAAA--ATCTACAAGGCAGCAACATATTGG 2203
| || ||| ||| || ||| || || ||| |||| ||| | || | ||||| ||||
Sbjct 1981 TAAG-AGT-CCCATG-GGTGTTGTTATACGGAAAGTGTCT-C-AGAC-GCAACGTATTAC 2034
Query 2204 ATTGGAGTTCCCAGAC-GCAAAAGTGAAAATGGATGCACTTATAAACATATCGATTGGGG 2262
||||||||||||| || |||| ||| ||||| | |||||| || || || || ||
Sbjct 2035 ATTGGAGTTCCCA-ACTGCAAGCGTGGAAATGCA---ACTTATGAATATGTCAATCATGG 2090
Query 2263 GAGACATTACTTTTGAGT-TTCGTTCA-AAATTTAG-AGGATATGCTGAATACGTCTCTT 2319
||||||||| ||| || || |||| | |||| | |||||||||||||||| |||| |
Sbjct 2091 GAGACATTAAGTTT-CGTATT--TTCACAGATTTTGAAGGATATGCTGAATACTTCTCCT 2147
Query 2320 TTAATTCTGAGCAACAGATACCCAT--TATATCGG-CGA-TGAGTCTGCAACAAGCACCT 2375
||| | |||||||| |||| |||| || | || | | | ||| | || ||||| |||
Sbjct 2148 TTAGTACTGAGCAAAAGAT--CCATGCTACA-AGGAC-AGTAAGTGTCCACCAAGCTCCT 2203
Query 2376 TGGGTCATCTCAGAG-TGCAACAGATTC-AATTCCCTCCGCATCATGAGGTTCAGCCACA 2433
|| || |||| ||| | ||||| | || | ||| ||| |||| |||||||||| |||
Sbjct 2204 CGGCTCGTCTCGGAGCT-CAACA-AATCTACTTCGCTCAATATCAGGAGGTTCAGCTACA 2261
Query 2434 AAGAAAACGGT-GAATCTTTCTCCTTTGAC-GTCTTTCCAGATTTTCCCGACCTGAAAGA 2491
|||| ||| | | | || || ||||| || || |||||| || | || | |||| ||||
Sbjct 2262 AAGAGAACATTCG-ACCTGTCACCTTTCACAGT-TTTCCATATATACCTGCCCTGGAAGA 2319
Query 2492 GCTAAAACTAGTGAACTTAAACAT-CAGGAAAA-TCCCATCTGGGATTTGTCACCTGGAT 2549
|||||||||||| |||||||| || || |||| | || ||||||| ||||| ||||
Sbjct 2320 GCTAAAACTAGTCAACTTAAATATCCA--AAAACTATCAGATGGGATTGGTCACTTGGAA 2377
Query 2550 TTACTAGAGAAGCTGGACCTCAGCGGAAATGATTTTGAGAACTTACCAGAAGCTATGAGT 2609
| ||||| || |||||| ||||||||||||||||||||||||||||||||| ||||| |
Sbjct 2378 CTCCTAGAAAAACTGGACTTCAGCGGAAATGATTTTGAGAACTTACCAGAAGATATGAAT 2437
Query 2610 AGCCTTTCCCGGTTAAAAACTCTCTGGCTTCAAAACTGCTTTAAGCTCCAGGAGTTGCCA 2669
|| ||||| ||| ||||||||||||| |||| |||||| || ||| |||| |||| |
Sbjct 2438 AGACTTTCTCGGCTAAAAACTCTCTGTCTTCGAAACTGGAGCAAACTCAAGGAATTGCTA 2497
Query 2670 AAGCTAACTCAGGTGCAGACACTTACACTTACCAACTGTAGGAACCTTAGATCATTGGCG 2729
||||||||||||||||| |||| || ||| |||||||||||| ||| |||||||||| |
Sbjct 2498 GAGCTAACTCAGGTGCAGTCACTCACTCTTTCCAACTGTAGGAGCCTCAGATCATTGGTG 2557
Query 2730 AAACTATCTAACACAAGTCAAGATGAGGGAAGATACTGTTTGCTTGAGCTTTGCCTTGA 2788
|||| ||| | ||||||||||| ||| | |||||||||||||||||||||||||||
Sbjct 2558 AAACCCTCTGATGCAAGTCAAGATCCGGGCATATACTGTTTGCTTGAGCTTTGCCTTGA 2616
Score = 233 bits (126), Expect = 5e-60
Identities = 239/291 (82%), Gaps = 17/291 (6%)
Strand=Plus/Plus
Query 2854 ATCTCAGCAACCATGATTTTGAGACATTGCCATCAAGCATCAGAGATCTTACCTCATTGG 2913
||||||||| |||||| ||| ||||| ||||| |||||||||||||||||||||||||||
Sbjct 2622 ATCTCAGCAGCCATGACTTTAAGACACTGCCAGCAAGCATCAGAGATCTTACCTCATTGG 2681
Query 2914 TAACACTTTGCCTCAATAACTGCAAGAAACTCAAATCGGTGGAAAAACTTCC-CTT-GTC 2971
|||| || |||||||||||||||||||||||||||||||||||| ||||||| || | |
Sbjct 2682 TAACTCTCTGCCTCAATAACTGCAAGAAACTCAAATCGGTGGAAGAACTTCCACTGAGCC 2741
Query 2972 TCTCCAATTTCTCGATGCACACGGCTGTGATTCTCTCGAAGCTGGTTCTGCAGAACATTT 3031
| || ||||||| |||||||| || ||||||||||| ||||||| | || |||||||||
Sbjct 2742 T-TC-AATTTCTAGATGCACAGGGTTGTGATTCTCTTGAAGCTGATGCTTTAGAACATTT 2799
Query 3032 TGAGGACATACCAAACAAGGAGGCAC-AT-ACA-C-GAA-A-TGACTA-CTTCCAAGAAA 3084
| | || | || |||||| |||| || | ||| | || | || || |||||||||||
Sbjct 2800 TAAAGAGAGACTAAACAAAGAGGTACCAGCACATCCGAGTAGTG-CTCGCTTCCAAGAAA 2858
Query 3085 CTG-AGATGTCGAGTTATGTACTGAAA-ACTCAAGCCACAAGAAA-TCGCC 3132
| | ||||| ||||||| | || | | || |||||||||| ||| |||||
Sbjct 2859 C-GCAGATGACGAGTTACGAACAGGATCAC-CAAGCCACAAAAAAGTCGCC 2907
> Ahg908894 jgi|Araly1|908894|Al_scaffold_0002_1975
Length=2781
Score = 283 bits (153), Expect = 5e-75
Identities = 430/559 (77%), Gaps = 37/559 (7%)
Strand=Plus/Plus
Query 703 AGGTTCTCCTGGTAGGAATCTGGGGAATGGGAGGAATTGGGAAAACCTCCATTGTTAAGT 762
|||||||| | ||||||| ||||| |||||||| || || |||||| |||||| || |
Sbjct 626 AGGTTCTCTTTATAGGAATATGGGGTATGGGAGGCATAGGCAAAACCACCATTGCCAATT 685
Query 763 GTCTCTATGACCAG-CTCTCACCTAAATTTC-CAGCTCATTGTTTCATAGAAAACATTAA 820
|||| ||||||| | | ||| | || ||| |||||| || |||||| ||| |||||||
Sbjct 686 GTCTATATGACC-GATTTTCAAGTCAA-TTCTCAGCTCGTTATTTCATTGAAGACATTAA 743
Query 821 GAGTGTTAGTAAAGACAATGGCCATGAT-CTAAAGCATTTGCA-AAAAGAATTGCTCTCC 878
|| | || |||| ||||| | | | | || | | || || |||| ||| ||||||
Sbjct 744 GAATATTTGTAAGGACAA--G--A-G-TCCT-GCGTACTTACAGGAAAG-ATTCCTCTCC 795
Query 879 AGTATCCTCT-GT-G-AT-GATATTAGGTTAT-GGAG-CGTGGAAGCTGGATGC-CAAGA 931
|| || | | || | | |||||| |||| | | || | | ||||| ||| | || ||
Sbjct 796 AGAAT-TTGTGGTGGTTTAGATATT-GGTTTTCGAAGCCAT-GAAGCAAGAT-CGCAGGA 851
Query 932 GATAA-AAAAGAGACTTGGGAATCAAAAGGTTTTTCTTGTGCTTGATGGTGTGGATAAAG 990
||||| | ||||| ||| | ||||| | || ||||||||||||||||||||||||
Sbjct 852 GATAATCGCA-AGACTCGGGCACCAAAAAATACTTATTGTGCTTGATGGTGTGGATAAAG 910
Query 991 TGGCGCAGGTGCATGCTTTGGCAAAAGAGAAAAACTGGTTTGGTCCTGGGAGCCGAATTA 1050
||| |||| | ||||| ||||||||||| | | |||||||||||| ||||||||||| |
Sbjct 911 TGGAGCAGTTACATGCCTTGGCAAAAGACACGAGCTGGTTTGGTCCAGGGAGCCGAATCA 970
Query 1051 TCATAACCACTCGAGATATGGGCTTGCTCAATACCTGTGGAGTAGA-AGTCGTTTATGAG 1109
|||||||||| ||||| | |||| |||||||| ||||||||||| | | | || ||||||
Sbjct 971 TCATAACCACACGAGACAGGGGCCTGCTCAATTCCTGTGGAGTAAACAAT-GTATATGAG 1029
Query 1110 GTTAAGTGCTTGGATGATAAGGATGCCCTCCAGATGTTTAAACAGATT--GCTTTTGA-A 1166
||||||||||||||||||||||||||||||||| | |||||| | || ||||| || |
Sbjct 1030 GTTAAGTGCTTGGATGATAAGGATGCCCTCCAGGTATTTAAA-AT-TTCAGCTTT-GAGA 1086
Query 1167 GGAGGACTTCCTCCTTGTGAGGGTTTTGACCAACTCT-CAATCCGAGCTTCTAAGCTTGC 1225
||| | | || |||| || || ||||| ||||||| || || |||||||| ||| ||
Sbjct 1087 GGAAGCCCGCCACCTTCAGATGGATTTGAGCAACTCTTCA-TCAGAGCTTCTCGGCTGGC 1145
Query 1226 TCACGGGCTTCCTTCTGCC 1244
||||| ||||| ||||||
Sbjct 1146 ACACGGTCTTCCCTCTGCC 1164
> Ahg908896 jgi|Araly1|908896|Al_scaffold_0002_1977
Length=3510
Score = 147 bits (79), Expect = 7e-34
Identities = 396/544 (73%), Gaps = 42/544 (8%)
Strand=Plus/Plus
Query 2489 AGAGCTAAAACTAGTGAACTTAAACAT-CAGGAAAATCCCA-TCTGGGATTTGTC-ACCT 2545
|||| | || ||| | |||||||| || || |||||||||| || | ||| ||| | |
Sbjct 2433 AGAGTTGAATCTAATCAACTTAAATATCCA-GAAAATCCCAGTC-GACATTGGTCTA-AT 2489
Query 2546 GGATTTACTAGAGAAGCTGGACCTCAGCGGAAATGATTTTGA-GAACTTACCAGAAGCTA 2604
| | | ||||||||| |||||||||||||||||||| ||| | || ||||| | | | |
Sbjct 2490 GCAGTCACTAGAGAAACTGGACCTCAGCGGAAATGA-TTTCAGGAGTTTACCCGCATCAA 2548
Query 2605 TG-AGTAGCCTTTCCCGGTT-AAAAACTCTCTGGCTTC-AAAACTGCTTTAAGCTCCAGG 2661
| || | |||||| ||| ||| || | ||| || || ||| | || || || |
Sbjct 2549 CGAAG-AACCTTTCGAAGTTGAAATAC-GTGAGGC-TCTTTAATTGCATCAAACT-CAAG 2604
Query 2662 A-GTTGCCAAAGCTAACTCAGGTGCAGACACTTACA-CTTACCAACTGTAGGAACCTTAG 2719
| || ||| || | ||| || ||||||| || | | ||| || |||| |||| | |
Sbjct 2605 ACATTTCCAGAGTTGACTGAGTTGCAGACGCTCA-AGCTTTCCGGCTGTTCCAACC-TCG 2662
Query 2720 -ATCATTGGC-GAAACTAT-CTAACACAAG-TCAAGATGAGGGAAGATACTGTTTGCTTG 2775
|||| | || | |||| | || | || ||||||||| || |||| ||||||||| |
Sbjct 2663 AATCACT-GCTGGAACT-TCCTTGTGC-AGTTCAAGATGAAGGCAGATTCTGTTTGCTAG 2719
Query 2776 AGCTTTG-CCTTGAAAATTGCAAGAGTGTTGAATCATTGTCAGATCAGCTTAGTCATTTC 2834
||| ||| ||||| || ||||||| | | || |||||||||| |||||||| | ||||
Sbjct 2720 AGC-TTGAGCTTGATAACTGCAAGAATCTCCAAGCATTGTCAGAACAGCTTAGCCGTTTC 2778
Query 2835 ACCAAGTTGACATGTTTAGATCTCAGCAACCATGATTTTGA-GACATTGCCAT-CAAGCA 2892
||||| || | | || || || |||| ||| || ||||| | || | || | |||||
Sbjct 2779 ACCAATTTAATACACTTGGACCTAAGCAGCCACGACTTTGACG-CAAT-CCCTGAAAGCA 2836
Query 2893 TC-AGAGATCT-TACCTCATTGGTAACACTTTGCCTCAATAACTGCAAGAAACTCAAATC 2950
|| || || || | | || |||||||| || |||||||||||||||||||||||||||||
Sbjct 2837 TCAAG-GAGCTGT-CATCTTTGGTAACTCTGTGCCTCAATAACTGCAAGAAACTCAAATC 2894
Query 2951 GGTGGAAAAACTTCC-CTT-GTCTCTCCAATT-TCTCGATGCACACGGCTGTGATTCTCT 3007
|||||| | ||||| | | | ||| || |||| | ||||||||||| ||||| ||
Sbjct 2895 AGTGGAAGAGCTTCCACAAAG-C-CTC-AAGCATCTCTACGCACACGGCTGCGATTCCCT 2951
Query 3008 CGAA 3011
|||
Sbjct 2952 GGAA 2955
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 125780278765
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5