BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G17610.1
Length=1463
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471970 jgi|Araly1|471970|fgenesh2_kg.1__1924__AT1G17610.1 979 0.0
> Ahg471970 jgi|Araly1|471970|fgenesh2_kg.1__1924__AT1G17610.1
Length=1137
Score = 979 bits (530), Expect = 0.0
Identities = 597/630 (95%), Gaps = 2/630 (0%)
Strand=Plus/Plus
Query 1 ATGTCTACTTCTTATTCTTTTTTGTTGGCTGGAAGAGAGTTGGATGTGTTCTTGAGTTTC 60
|||||| | |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 ATGTCTTCCTCTTATTCTTTTTTGTTGGCCGGAAGAGAGTTGGATGTGTTCTTGAGTTTC 60
Query 61 AGCGGTAAGATAGCTCTTGACGTTGATTTTGGTTATGATTTGTCACGAAATGGTATCAAA 120
|||||||||||||||||||||||| |||| || ||||||||||| || ||||| ||||||
Sbjct 61 AGCGGTAAGATAGCTCTTGACGTTAATTTCGGCTATGATTTGTCTCGGAATGGCATCAAA 120
Query 121 GCTTTTAAATCCGAAAGCTGGAAGGAGAGTAGCTTCAAACCAATTGATCTACGAACGCTT 180
||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct 121 GCTTTTAAATCCGAAAGCTGGAAGGAGAGTAGCTTCAAACCAATTGATCAACGAACACTT 180
Query 181 GAGGCTTTGACAGAGTCCAAAGTTGCAGTTGTCATGACGTCTGATGAAGAAGTTTCTTCA 240
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 181 GAGGCTTTGACAGAGTCCAAAGTTGCAGTTGTCATGACGTCTGATGAAGAAGCTTCTTCA 240
Query 241 GTTGGGTTCCTTGAAGAGCTCATTGTAATAATTGAGTTTCAAGAGAAACGTTCACTCACT 300
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 241 GTTGGGTTCCTTGAAGAGCTCATTGTAATAGTTGAGTTTCAAGAGAAACGTTCACTCACT 300
Query 301 GTCATACCAGTCTTCCTCACAAAACACCCTTTGGATGTGGAAAAAGTCTCTCAAATATTT 360
||||||||| |||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 301 GTCATACCAATCTTCCTCACAAAACACCCTTTGGATGTGGAACAAGTCTCTCAGATATTT 360
Query 361 CCTGAGAGAGCCAAAATTTGGAGGACTGCAATTGCCAAACTGGACAACATAGCTGCACAG 420
|| ||||| |||| |||||||| ||||||||||||||||||||| | ||||||| |||||
Sbjct 361 CCGGAGAGGGCCATAATTTGGAAGACTGCAATTGCCAAACTGGAGAGCATAGCTTCACAG 420
Query 421 TACTCGTTTTCTCGGAATCTTGCGGTGATGCACGGAACACACCGGATCAAGCAGATTGCT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 421 TACTCGTTTTCTCGGAATCTTGCGGTGATGCACGGAACACACCGGATCAAGCAAATTGCT 480
Query 481 GATGACATTAGGCTTATGTTTCTGTCCTCTGCATCAAGCGATTTCAAAGGCCTTGCAGGA 540
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 481 GATGACATTAGGCTTATGTTTCTGTCCTCTGCATCAAGCGATTTCAAAGGACTTGCAGGA 540
Query 541 ATGGACCGTCACATGAAAGCATTGTATGCGTTGTTGGCTTTAGAATCTGACGAAA-AGGT 599
||||| ||||||||||||||||| ||||||||||||||||| ||||||||| ||| ||||
Sbjct 541 ATGGATCGTCACATGAAAGCATTTTATGCGTTGTTGGCTTTGGAATCTGAC-AAAGAGGT 599
Query 600 TCGTACCATTGGTATTTGGGGTAGTTCAGG 629
||||||| |||| |||||||||||| ||||
Sbjct 600 TCGTACCGTTGGCATTTGGGGTAGTGCAGG 629
Score = 773 bits (418), Expect = 0.0
Identities = 480/511 (94%), Gaps = 0/511 (0%)
Strand=Plus/Plus
Query 753 AGGGGAAGATCTTAGAAGTGTGAATCATGAGATGAATGAAATGGCGGAAGCAAAGCAAAA 812
||||||| |||||| |||| || |||||||||||||||||||||| ||||||||| ||||
Sbjct 627 AGGGGAACATCTTACAAGTTTGGATCATGAGATGAATGAAATGGCCGAAGCAAAGAAAAA 686
Query 813 ACACCGGAAAGTTCTTTTGATAGCTGATGGTGTGAACAACATTGAACAAGGAAAGTGGAT 872
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 687 ACACCGGAAAGTTCTTTTGATAGCTGATGGTGTGAATAACATTGAACAAGGGAAGTGGAT 746
Query 873 CGCGGAGAACGCCAACTGGTTTGCTCCAGGAAGTAGAGTCATTCTAATCACTCAAGAAAA 932
||| ||| ||||||| ||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 747 CGCTGAGTACGCCAAGTGGTTTGCTCCAGGAAGCAGAGTCATTCTAATCGCTCAAGAAAA 806
Query 933 AAGTTTGCTTGTGCAATCAGGAGTGAATCATGTGTATGAAGTTGGTTCTCTAAGATATGA 992
||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 807 AAGTTTGCTTGTGGAATCTGGAGTGAATCATGTGTATGAAGTTGGTTCTCTAAGATACGA 866
Query 993 TGAAGCTCTCCAACTCTTCTCACGTTTTGCTTTCAAGCAGCCATATCCTTCTCCTGATTT 1052
||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||
Sbjct 867 TGAAGCTCTCCAACTCTTCTCACGTTTTGCTTTCACGCAGTCATATCCTCCTCCTGATTT 926
Query 1053 TGAACGCCTCTCAGTTCGTGCTGTTCAGCTTGCAGGGTTTCTTCCTGTGACCATTAGACT 1112
||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 927 CGAACGCCTCTCGGTTCGTGCTGTCCAGCTTGCAGGGTTTCTTCCTGTGGCCATTAGACT 986
Query 1113 GTTTGGTTCGTTTTTAACTGGTAGAGATAAAGAGGAGTGGGAAGCTACACTGCTTAAACT 1172
||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct 987 GTTTGGTTCGTTTTTAAATGGTAGAGATAAAGAGGAATGGGAAGCTACACTGCTTAAACT 1046
Query 1173 CAATGCAAAGCAAGGTAAAGACATAAAGGAAGTTTGGAAGATTATGGAAGCATTAGAAGA 1232
|||||||||||||||||||||||||| |||||| |||||||||||||| |||||||||||
Sbjct 1047 CAATGCAAAGCAAGGTAAAGACATAACGGAAGTGTGGAAGATTATGGAGGCATTAGAAGA 1106
Query 1233 TAAAGATATCGTGGAAGCATCCCAAAGATAA 1263
||||||||||||||||||||| ||| ||||
Sbjct 1107 TAAAGATATCGTGGAAGCATCAGAAACATAA 1137
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54735682065
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5