BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G17615.1
Length=1143
Score E
Sequences producing significant alignments: (Bits) Value
Ahg911573 jgi|Araly1|911573|Al_scaffold_0001_1827 1703 0.0
> Ahg911573 jgi|Araly1|911573|Al_scaffold_0001_1827
Length=1143
Score = 1703 bits (922), Expect = 0.0
Identities = 1069/1140 (94%), Gaps = 9/1140 (1%)
Strand=Plus/Plus
Query 10 TCATCGTCTTCTTCTTCAGCTACTCCACAAAAGTTCGACGTCTTTCTGAGTTTCAGAGGC 69
|||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct 7 TCATCGTCTTCTTCTTCAACTACTCCACAAAAGTTCGATGTCTTTCTGAGTTTCAGAGGC 66
Query 70 AAGGACACTCGCAGGACCTTCATTAGCTTTCTTTACAAAGAACTCATTGAAATGGGTATT 129
||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |||||
Sbjct 67 AAGGACACTCGCAGGACCTTCATCAGCTTTCTTTACAAAGAACTCATTGGAATGAGTATT 126
Query 130 CGAACTTTCAAAGACGACGTTGAACTCCAGAGTGGTCGTCGGATTGCTTCAGATCTCCTC 189
|||||||||||||||||||| |||||| ||||||| |||||||||||||| |||||||||
Sbjct 127 CGAACTTTCAAAGACGACGTCGAACTCAAGAGTGGCCGTCGGATTGCTTCTGATCTCCTC 186
Query 190 GCCGCGATCGAAAACTCCAAAATCGCCGTTGTGATTATCTCAAAGAATTACT-CTGCGTC 248
|| |||||||| ||||||||||||||||||||| ||||||||||||| | |||||||
Sbjct 187 ATGGCTATCGAAAATTCCAAAATCGCCGTTGTGATTGTCTCAAAGAATTA-TCCTGCGTC 245
Query 249 TCCCTGGTGTCTCCAAGAGCTAGTGATGATCATGGATGTCGAAAAGAAGGGTTCCATCAT 308
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 246 TCCCTGGTGTCTCCAAGAGCTAGAGATGATCATGGATGTCGAAAAGAAGGGTTCCCTCAT 305
Query 309 CGTTATGCCAATCTTTTACAACGTCGAGCCTGCTCATGTGAGAAGACAAATCGAACAGGT 368
||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 306 CGTTATGCCTATCTTTTACAACGTCGAGCCTGCTCATGTGAGGCGACAAATCGAAAAGGT 365
Query 369 CGCTAAACAGTTTAGGAAACATGAAGGA-AGGGAAAATTATGAGACTGTGGTGTCATGGA 427
|||| |||||||||||||||||||| | ||||||||||||||||||||||| |||||||
Sbjct 366 CGCTCAACAGTTTAGGAAACATGAA-AATAGGGAAAATTATGAGACTGTGGTATCATGGA 424
Query 428 GACAAGCTCTGACCAATTTGGCCAGTATCTCCGGCCATTGTTCTCGTGATTGCGAAGATG 487
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 425 GACAAGCTCTGACCAATTTGGCCAGTATCTCCGGCCATTGTTCTCGTGATTGTGAAGATG 484
Query 488 ACTCGAAGCTACTCGATGAGATAACCAAGAGAATTTCTGACA---TGTTATTCTCGGTAA 544
|||| ||||||||||| ||||| |||||||||||| |||||| |||||||||| | ||
Sbjct 485 ACTCCAAGCTACTCGACGAGATCACCAAGAGAATTACTGACATGTTGTTATTCTCTGCAA 544
Query 545 CACCACCAAGTGAGAGCATCAATAACCAACTTGGATTTGATGCACGCATGAAAGAGTTGT 604
||||||||||| | ||||||| ||||||| ||||||||||||||| ||||||||||||||
Sbjct 545 CACCACCAAGTCATAGCATCAGTAACCAATTTGGATTTGATGCACACATGAAAGAGTTGT 604
Query 605 ATCCATTGTTGGATTTGGA-TTCTAATGAAGGTGTGAGAGTGGTTGGAATTTGGGCAAGA 663
|||||||||| || || || |||||||||||||||||||||| |||||||||||||||||
Sbjct 605 ATCCATTGTTAGAATT-GACTTCTAATGAAGGTGTGAGAGTGATTGGAATTTGGGCAAGA 663
Query 664 GGAGGTAATGGAAGATCAGCTCTAGCTAGATACGTTTATCAAAAGATCTTTAAGAAATTC 723
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 664 GGAGGTAATGGAAGATCAGCTCTAGCTAGATATGTTTATCAAAAGATCTTTAAGAAATTC 723
Query 724 CAAAGTCATTGTTTTCTCGAAAACGTCAAAGGGATCCCTCACGATTGTCAAATGTCGAAT 783
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 724 CAAAGTCATTGTTTTCTCGAAAACGTCAAAGGGATTCCTCACGATTGTCAAATGTCCAAT 783
Query 784 CTAAGAGACGAGTTTCTTATCAGGATTCAAGGAGGGTACTCGAGGATGAAGACCTCAGGG 843
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 784 CTAAGAGACGAGTTTCTTATCAGGATTCAAGGAGGGTACTCGAAGATGAAGACCTCAGGG 843
Query 844 TTGATaaaaaaaaGGCTCATGAGTCAGAAAGTTCTACTTGTGGCTAACAATGTCGACAAA 903
|| || |||| ||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 844 TTAATCAAAACAAGGCTCATGAGTCAGAAAGTACTACTTGTAGCTAACAATGTCGACAAA 903
Query 904 CTCGAACAGTTAGATGCTCTTGCAGAATATTTTAACTGTTTTGGTCCAGGGAGCATAGTG 963
||||||||||| ||||||||| ||||| |||||||||||||||||||||| ||| |||||
Sbjct 904 CTCGAACAGTTGGATGCTCTTTCAGAAGATTTTAACTGTTTTGGTCCAGGTAGCCTAGTG 963
Query 964 CTCATAACTACACAAGACAAACAACTTCTTGTTGCGTTTGGGATAAAGGTTGTGTATGAA 1023
||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct 964 ATCATAACTACACAAGACAAACAACTTCTTCTTGCGTTTGGGATAAAAGTTGTGTATGAA 1023
Query 1024 GTTGAGTGCTTGAGATGCTTTGAAGTTCGTCAACTGTTTCGTCAAATCGGCTTTAGGGAA 1083
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1024 GTTGAGTGCTTGAGATGCTTTGAAGTTCGTCAACTGTTTCGTCAAATCGGCTTTAGAGAG 1083
Query 1084 AGAGATCTTAATGTCGGTTCCGAGTTGTCTTCACCTATATCCGGGACTGAATCTTCTTGA 1143
||||||||| |||| ||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 1084 AGAGATCTTTATGTTGGTTCCGAGTTGTCTTCGCCTATATCAGGGACTGAATCTTCTTGA 1143
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42621421206
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5