BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G17620.1
Length=1076
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471972 jgi|Araly1|471972|fgenesh2_kg.1__1926__AT1G17620.1 1531 0.0
> Ahg471972 jgi|Araly1|471972|fgenesh2_kg.1__1926__AT1G17620.1
Length=1052
Score = 1531 bits (829), Expect = 0.0
Identities = 986/1060 (93%), Gaps = 17/1060 (2%)
Strand=Plus/Plus
Query 4 TATAAAGAAGACACACATCTCCTAAATCTTACCCTTATTATTATTCATtctctctaatca 63
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 1 TATAAAGAAGACACACATCTCCTAAATCTTACCC---TTATTATT-ATTCTCTCTAATCA 56
Query 64 aatc--c-tcttctctctcaaatctcaatctcCGATTATGACAGACGACAGAGTTTACCC 120
| || | ||||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct 57 AGTCTTCTTCTTCTCTCTC-AATCTCAATCTCCGATTATGACGGACGACAGAGTTTACCC 115
Query 121 TGCATCAAAACCTCCCGCCATCGTCGGTGGC---GGTGCCCCAACCACCAATCCAACTTT 177
||| ||||||||||||||||||||||| ||| |||| | ||||||| |||||||||||
Sbjct 116 TGCTTCAAAACCTCCCGCCATCGTCGGCGGCGGAGGTGGCGCAACCACAAATCCAACTTT 175
Query 178 CCCGGCGAACAAAGCTCAGCTCTACAACGCAAATCGTCCCGCTTACCGTCCACCAGCTGG 237
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 176 TCCAGCGAACAAAGCTCAGCTCTACAACGCAAATCGTCCCGCTTACCGTCCACCAGCTGG 235
Query 238 TCGTCGTCGTACTAGCCATACCCGTGGATGTTGCTGCCGTTGCTGTTGCTGGACGATATT 297
|||||| |||| |||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 236 TCGTCGCCGTAGTAGCCATAGCCGTGGATGTTGCTGCCGTTGCTGTTGCTGGACGATTTT 295
Query 298 CGTAATCATCCTCTTACTCCTCATCGTCGCCGCCGCATCAGCCGTCGTATACCTAATCTA 357
|||||||||||||||| ||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 296 CGTAATCATCCTCTTAATCCTCATCGCCGCCGCCGCATCAGCCGTCGTTTACCTAATCTA 355
Query 358 CCGTCCTCAACGACCTAGCTTCACCGTCTCTGAACTCAAAATCTCCACTCTCAACTTCAC 417
|||||||||||| || |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 356 CCGTCCTCAACGGCCGAGCTTCACCGTCTCTGAACTCAAAATCTCCACTCTCAATTTCAC 415
Query 418 ATCCGCCGTTCGCCTCACCACCGCCATTTCCCTCTCCGTCATCGCCAGAAACCCTAACAA 477
||||||| || |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 416 ATCCGCCACTCACCTCACTACCGCCATTTCCCTCTCCGTCATCGCCAGAAACCCTAACAA 475
Query 478 AAACGTTGGATTCATCTACGACGTCACCGACATCACACTCTACAAAGCATCCACCGGAGG 537
|||||| || |||| |||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 476 AAACGTCGGGTTCAGCTACGACGCCACCGACATCACACTCTACAAAGTATCCACCGGAGG 535
Query 538 AGATGATGACGTAGTCATTGGTAAAGGAACGATCGCGGCGTTT-TCTCACGGGAAGAAGA 596
||||||||| |||||||| ||||||||||||||| || ||||| | ||||||||||||||
Sbjct 536 AGATGATGATGTAGTCATCGGTAAAGGAACGATCTCGTCGTTTGT-TCACGGGAAGAAGA 594
Query 597 ACACGACTACGCTTAGAAGTACGATCGGAAGTCCTCCGGATGAACTCGATGAGATCTCGG 656
|||| |||||||||||| |||||||||||||||||| || || | ||||||||| ||||
Sbjct 595 ACACCACTACGCTTAGATCTACGATCGGAAGTCCTCCCGAAGATCCCGATGAGATATCGG 654
Query 657 CGGGTAAGCTGAAAGGAGATCTGAAGGCGAAGAAAGCAGTGGCGATTAAGATTGTTTTGA 716
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 655 CGGGTAAGCTTAAAGGAGATCTGAAGGCGAAGAAAGCAGTAGCGATTAAGATTGTTTTGA 714
Query 717 ACTCGAAGGTGAAAGTGAAGATGGGAGCTCTAAAAACTCCTAAATCAGGAATTAGGGTTA 776
| || ||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||
Sbjct 715 ATTCCAAGGTGAAAGTGAAGATGGGATCTCTGAAAACTCCTAAGTCAGGAATTAGGGTTA 774
Query 777 CTTGTGAAGGGATTAAAGTGGTGGCTCCGACGGGAAAGAAGGCGACGACGGCTACGACTT 836
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 775 CTTGTGAAGGGATTAAAGTGGTGGCTCCGACGGGAAAGAAGGCGACGACGGCTACTACCT 834
Query 837 CCGCCGCTAAGTGTAAGGTTGATCCAAGATTTAAGATCTGGAAAATTACTTTCTAAATAT 896
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 835 CCGCCGCTAAGTGTAAGGTTGATCCAAGATTTAAGATTTGGAAAATTACTTTCTAAATAT 894
Query 897 AGTAAACAAAATAATGGAATCAcattcttagttttttcttcattttctttttattactcc 956
|| ||||| | |||||||||||||||||||||||||| || |||| ||||||||| |||
Sbjct 895 AGAAAACATA-TAATGGAATCACATTCTTAGTTTTTTTTTTTTTTT-TTTTTATTAATCC 952
Query 957 att-gtttcaattttcatttctttttaaatttgatttcatATACAGTTCTTTGATTCCTG 1015
||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 953 ATTTGTTTCAATTTTCGTTTCTTTTTAAATTTGATTTCATATACAGTTCTTTGATTCCTG 1012
Query 1016 TAAGACTTTAtttttttGGTTT-ATGTAAATGAAGATATA 1054
|||||||||||||||||||||| |||||||||||||||||
Sbjct 1013 TAAGACTTTATTTTTTTGGTTTTATGTAAATGAAGATATA 1052
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40067185767
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5