BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G17630.1
Length=2196
Score E
Sequences producing significant alignments: (Bits) Value
Ahg335029 jgi|Araly1|335029|fgenesh1_pg.C_scaffold_1001594 3301 0.0
> Ahg335029 jgi|Araly1|335029|fgenesh1_pg.C_scaffold_1001594
Length=2292
Score = 3301 bits (1787), Expect = 0.0
Identities = 2063/2198 (94%), Gaps = 12/2198 (1%)
Strand=Plus/Plus
Query 1 ATGGTTCACGCTTCTCTT-TGGC-AATTTCGCCTTCAA-ATTATCCCTTGGCGTCTTCGT 57
||||||||||| ||| || ||| || |||| |||||| | |||||||||| || ||||
Sbjct 1 ATGGTTCACGCATCT-TTGAGGCGAA-TTCGTCTTCAACA-AATCCCTTGGCATCGTCGT 57
Query 58 AATTTTTGCTTCCTCACTTCTCAATGTCCATACACATCGATTTCTTCTCCCGACACCGTT 117
||| ||| |||| ||||| |||||||| |||||||| || ||||||||| | | ||||
Sbjct 58 AATGGTTGGTTCCACACTTGTCAATGTCAATACACATGGACATCTTCTCCCAATATCGTT 117
Query 118 TCAGTTTCCTCGTACTACTCCCTTACGTCTAACAATGATCAATCCCTCTTCCATTACTTC 177
||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 118 TCAGTTTCCTCGTACTACTCCCTTACGACTAACAATGATCAATCCCTCTTCCATAACTTG 177
Query 178 GATCATCTTCTTGGATTATGCCTGACAGCTCAGCAATGCAGGCAAGTTCATGCCCAAGTA 237
|||||||||||| |||||||| |||| ||||||||||||| ||||||||| |||||||||
Sbjct 178 GATCATCTTCTTCGATTATGCTTGACGGCTCAGCAATGCAAGCAAGTTCACGCCCAAGTA 237
Query 238 CTTCTATCCGATTTCATCTTCCGTTCTGGGTCATTAGCTGCGAATCTCATATCGGTTTAC 297
||| ||||||||| ||||| ||||||||||||||||||||||||| || |||||||||||
Sbjct 238 CTTGTATCCGATTACATCTACCGTTCTGGGTCATTAGCTGCGAATTTCGTATCGGTTTAC 297
Query 298 GCTCGGTTAGGACTCCTTCTCGATGCCCGTAACGT-TTTCGAGACTGTTTCTCTTGTTTT 356
|||||||||||||||| ||||||||||||||||| ||| || |||||||| |||||| |
Sbjct 298 TCTCGGTTAGGACTCCTCCTCGATGCCCGTAACGTGTTT-GAAACTGTTTCGCTTGTTCT 356
Query 357 GTTGTCGGATTTGCGTTTGTGGAACTCGATTCTAAAAGCTAATGTGTCACATGGGTTATA 416
|| ||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct 357 GTGGTCGGATTTGCGTCTGTGGAACTCGATTCTAAAAGCTAATGTGTCTCATGGGTTATA 416
Query 417 CGAGAATGC-TCTTGAGCTTTACAGGGGAATGCGTCAACGAGGTCTCACAGGGGACGGAT 475
||||||||| | ||||||||||||| ||||||||| |||||||||||||||||||||| |
Sbjct 417 CGAGAATGCGT-TTGAGCTTTACAGAGGAATGCGTGAACGAGGTCTCACAGGGGACGGGT 475
Query 476 ATATTTTGCCCTTGATCCTTCGTGCTTGTAGGTACTTAGGTCGTTTTGGTTTGTGTCGGG 535
||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 476 ATATTCTGCCCTTGATCCTTCGAGCTTGTAGGTACTTAGGTCGTTTTGGTTTGTGTAGGG 535
Query 536 CTTTTCATACTCAAGTTATTCAGATTGGTTTGAAAGAGAATCTTCATGTGGTTAATGAGT 595
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 536 CTTTTCATAGTCAAGTTATTCAGATTGGTTTGAAAGAGAATCTTCATGTGGCTAACGAGT 595
Query 596 TGCTTACGTTGTATCCAAAGGCGGGAAGGATGGGAGATGCTTACAATCTGTTTGTTGAAA 655
|||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 596 TGCTTACGTTGTATCCAAAGGCGGCAAGGATAGGAGATGCTTACAATCTGTTTGTTGAAA 655
Query 656 TGCCTGTGAGAAACCGTATGTCATGGAATGTCATGATTAAAGGGTTTTCTCAAGAGTATG 715
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 656 TGCCTGTGAGAAACCGTATGTCGTGGAATGTCATGATTAAAGGTTTTTCTCAAGAGTATG 715
Query 716 ATTGTGAAAGTGCTGTTAAGATTTTTGAATGGATGCAACGTGAAGAGTTTAAACCAGATG 775
| |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 716 ACTGTGAAAGTGCTGTTAAGATTTTTGAATGGATGCAACGTGAAGATTTTAAACCTGATG 775
Query 776 AAGTGACTTGGACTTCGGTTTTGTCTTGTCATTCGCAGTGTGGGAAGTTTGAAGATGTTT 835
|||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 776 AAGTGACTTGGACTTCACTTTTATCTTGTCATTCGCAGTGTGGGAAGTTTGAAGATGTTA 835
Query 836 TAAAGTATTTTCATCTTATGAGGATGAGTGGAAATGCAGTTAGTGGTGAAGCTCTTGCTG 895
|||||||||||||| |||||||||||||||||| |||||||||||| |||||||||||||
Sbjct 836 TAAAGTATTTTCATGTTATGAGGATGAGTGGAAGTGCAGTTAGTGGCGAAGCTCTTGCTG 895
Query 896 TTTTCTTTTCTGTATGTGCTGAATTAGAAGCATTAAGTATTGCTGAGAAAGTTCATGGGT 955
||||||| ||||| ||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct 896 TTTTCTTCTCTGTGTGTGCTGAATTAGGAGCATTAAGTATCGCTGAGAAAGTTCATGGGT 955
Query 956 ATGTTATAAAAGGTGGATTTGAAGAGTATTTGCCCTCGAGGAACGCATTGATACACGTAT 1015
||||||||||||||| |||||||||| ||||||||| |||||||||||||||||||| |
Sbjct 956 TTGTTATAAAAGGTGGGTTTGAAGAGTGTTTGCCCTCCAGGAACGCATTGATACACGTGT 1015
Query 1016 ACGGGAAGCAAGGGAAAGTTAAAGATGCAGAACACTTGTTCCGGCAAATAAGAAACAAAG 1075
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1016 ACGGGAAGCAAGGGAAAGTTAAAGATGCAGAACAGTTGTTCCGGCAAATAAGAAACAAAG 1075
Query 1076 GTATAGAGAGCTGGAATTCTTTGATAACATCGTTTGTGGATGCTGGTAAACTCGACGAGG 1135
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1076 GTATAGGGAGCTGGAATTCTTTGATAACATCGTTTGTGGATGCTGGTAAACTCGACGAGG 1135
Query 1136 CTCTTTCATTGTTTTCTGAGTTGGAGGAAATGAATCATGTTTGTAACGTAAAGGCTAATG 1195
|||||||||||||| ||||||||||||||||| || |||||||||| || |||||||| |
Sbjct 1136 CTCTTTCATTGTTTACTGAGTTGGAGGAAATGGATGATGTTTGTAATGTCAAGGCTAACG 1195
Query 1196 TAGTTACATGGACCTCTGTTATTAAGGGTTGTAATGTCCAAGGAAGAGGAGACGATTCAC 1255
| |||||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||
Sbjct 1196 TTGTTACATGGACCTCTGTTATCAAGGGTTGTAACGTCCAAGGAAGAGGAGACTATTCAC 1255
Query 1256 TTGAATATTTCCGGCAAATGCAGTTTTCCAAAGTATTGGCTAATTCAGTGACAATTTGTT 1315
||||||||||||| | |||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 1256 TTGAATATTTCCGACGAATGCAGTTTTCCAAAGTATTGTCTAATTCAGTGACGATTTGTT 1315
Query 1316 GTATACTATCAATTTGTGCGGAGCTTCCAGCTTTGAATCTCGGAAGAGAGATCCATGGGC 1375
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1316 GTATACTATCAATATGTGCGGAGCTTCCAGCTTTGAATCTCGGAAGGGAGATCCATGGGC 1375
Query 1376 ATGTGATACGGACCTCGATGAGCGAGAACATTCTGGTTCAGAATGCATTGGTGAATATGT 1435
|||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1376 ATGTAATACGGACCTCAATGAGCGATAACATTCTGGTTCAGAATGCATTGGTGAATATGT 1435
Query 1436 ACGCAAAATGTGGGTTACTCAGTGAGGGGAGTCTAGTATTTGAAGCAATTAGGGATAAGG 1495
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1436 ACACAAAATGTGGGTTACTCAGTGAGGGGAGTCTAGTATTTGAAGCAATTAGGGATAAGG 1495
Query 1496 ATTTGATCTCATGGAACTCGATAATCAAAGGTTATGGTATGCATGGGTTTGCTGAGAAAG 1555
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1496 ATTTGATCTCATGGAACTCGATAATCAAAGGTTATGGTATGCATGGGTTTGGTGAGAAAG 1555
Query 1556 CTCTAAGTATGTTCGATCGAATGATAAGTTCTGGGTTTCATCCTGATGGGATCGCTTTGG 1615
||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 1556 CTCTAAGTATGTTTGATCGAATGATAAAATCTGGGTGTCATCCTGATGGGATCGCTTTGG 1615
Query 1616 TAGCTGTTCTTTCAGCCTGTAGTCATGCAGGGCTGGTTGAAAAGGGACGCGAAATTTTCT 1675
|||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1616 TAGCTGTTCTGTCAGCCTGTAGTCATGCAGGGCTGGTTGAAAAGGGACGCAAAATTTTCT 1675
Query 1676 ATTCCATGAGCAAGAGATTTGGATTAGAGCCCCAACAAGAGCACTATGCATGTATTGTTG 1735
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1676 ATTCGATGAGCAAGAGATTTGGATTAGAGCCCCAACAAGAGCACTATGCATGTATTGTTG 1735
Query 1736 ATCTCCTTGGTCGTGTAGGCTTTCTGAAAGAAGCGAGTGAGATTGTGAAGAACATGCCTA 1795
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 1736 ATCTCCTTGGTCGTGTAGGGTTTCTGAAAGAAGCGAGTGAGATTGTGAACAACATGCCTA 1795
Query 1796 TGGAGCCCAAGGTCTGTGTGTTGGGAGCTCTGTTGAATTCTTGCCGGATGCATAAAAACG 1855
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1796 TGGAGCCCAAGGTCTGTGTGTTGGGAGCTCTGTTAAATTCTTGCCGGATGCATAAAAACA 1855
Query 1856 TGGACATTGCAGAGGGTATAGCATCACAACTTAGTGTTCTTGAACCGGAGAGGACAGGAA 1915
|||||||||||||| |||||||||||||||||| ||||| ||||||||||||||||| |
Sbjct 1856 TGGACATTGCAGAGATTATAGCATCACAACTTAGGGTTCTAGAACCGGAGAGGACAGGCA 1915
Query 1916 GCTATATGTTGCTTTCCAACATCTACTCTGCTGGTGGAAGATGGGAAGAATCTGCAAATG 1975
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1916 GCTATATGTTGCTTTCTAACATCTACTCTGCTGGTGGAAGATGGGAAGAATCTGCAAAGG 1975
Query 1976 TAAGGGCTTTAGCCAAGAAAAAGGATTTGAAGAAAGTTTCTGGAAGCAGTTGGATTGAAG 2035
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1976 TTAGGGCTTTAGCCAAGAAAAAGGATTTGAAGAAAGTTTCTGGAAGCAGTTGGATTGAAT 2035
Query 2036 TGAAGAAGAAAAAGTACAAATTCTCGTCAGGATCAATAGTACAGAGCGAGTTTGAGACCA 2095
|||||||||||| |||||||||||||||||||||||||||||||| ||||||| || ||
Sbjct 2036 TGAAGAAGAAAATCTACAAATTCTCGTCAGGATCAATAGTACAGAGTGAGTTTGCGAGCA 2095
Query 2096 TCTACCCGGTTCTTGAAGATTTGGTTAGTCATATGTTGAAAAAAGGCCCTACACATGATG 2155
|||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2096 TCTACCCGGTTCTTGAGGATTTGGTTAGTCATATGGTGAAAAAAGGCCCTACACATGATG 2155
Query 2156 GGAACAATTATGAGGATGATCTAGAC-CTATGGACAGC 2192
|||||||| | ||||||||||||||| | |||||||||
Sbjct 2156 GGAACAATGACGAGGATGATCTAGACTC-ATGGACAGC 2192
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82655831650
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5