BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G17640.1
Length=1110
Score E
Sequences producing significant alignments: (Bits) Value
Ahg335030 jgi|Araly1|335030|fgenesh1_pg.C_scaffold_1001595 1550 0.0
> Ahg335030 jgi|Araly1|335030|fgenesh1_pg.C_scaffold_1001595
Length=1065
Score = 1550 bits (839), Expect = 0.0
Identities = 986/1053 (94%), Gaps = 26/1053 (2%)
Strand=Plus/Plus
Query 58 GAACAATTACCACAATCGGATTTTGAAGTGGAGACCTTTGATGACCGGAGGAACGGTGGT 117
|||||||||| || |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 37 GAACAATTACAACCATCGGATTATGAAGTGGAGACCTTTGATGACCGGAGGAACGGTGGT 96
Query 118 GCAGCCGTTGATACTGGTGGGATTCAGATGAAGCATTCCGTTGACCATCGCCATTCTTCT 177
||||||||||||||||||||||||||||||||||||||| |||| ||||| |||| |||
Sbjct 97 GCAGCCGTTGATACTGGTGGGATTCAGATGAAGCATTCCATTGAGCATCGTTATTCGTCT 156
Query 178 TCGTCCATGTCTTCTCCTGGGAAACTGTTCGTAGGTGGAGTTTCTTGGGAAACAACTGCA 237
|| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |
Sbjct 157 TCATCCATGTCTTCTCCTGGGAAACTATTCGTAGGTGGAGTTTCGTGGGAAACAACTGAA 216
Query 238 GAAACTTTTGCGAATTACTTTGGAAAGTTTGGAGAAGTTGTCGACTCTGTAATCATGACA 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 217 GAAACTTTTGCGAATTACTTTGGAAAGTTTGGAGAAGTTGTCGACTCTGTAATCATGACA 276
Query 298 GATAGAATAACTGGGAACCCAAGGGGGTTTGGGTTTGTCACTTTTGCTGATTCAGCTGTT 357
|||||||||||||| || |||||||| |||||||||||||||||||||||||||||||||
Sbjct 277 GATAGAATAACTGGAAATCCAAGGGGATTTGGGTTTGTCACTTTTGCTGATTCAGCTGTT 336
Query 358 GCTGAGAAAGTTTTGGAGGAAGATCATGTAATAGATGACCGAAAGGTTGATCTGAAAAGG 417
|| |||||||||||||||||||| |||||||||||||| || ||||||||||||||||||
Sbjct 337 GCAGAGAAAGTTTTGGAGGAAGAGCATGTAATAGATGAGCGGAAGGTTGATCTGAAAAGG 396
Query 418 ACACTTCCTAGAGGGGACAAGGATACTGATATCAAAGCGGTATCAAAGACCAGGAAAATC 477
||| ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 397 ACAGTTCCTAGAGGGGACAGGGATACCGATATCAAAGCGGTATCAAAGACCAGGAAAATC 456
Query 478 TTTGTTGGTGGACTTCCACCACTTTTGGAAGAAGATGAACTGAAGAATTATTTCTGTGTA 537
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 457 TTTGTTGGTGGACTTCCACCACTTTTGGAAGAAGAGGAACTGAAAAATTATTTCTGTGTA 516
Query 538 TATGGTGACATAATTGAGCATCAGATCATGTATGACCACCACACGGGAAGGTCAAGGGGA 597
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 517 TATGGTGACATAATCGAGCATCAGATCATGTATGACCACCACACGGGAAGGTCGAGGGGA 576
Query 598 TTTGGTTTTGTAACCTTCCAGACCGAAGATTCTGTTGATAGACTTTTCTCCGATGGAAAA 657
||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||
Sbjct 577 TTTGGTTTTGTAACCTTTCAGACTGAAGATTCTGTTGACAGACTTTTCTCCGATGGAAAA 636
Query 658 GTTCACGAGCTCGGTGACAAACAGGTGGAAATAAAAAGGGCCGAACCAAAGAGAACCGGG 717
|| | | ||| | ||| || |||||||||||||||||||||||
Sbjct 637 GT----G-G-------ACA------T--AAA-AA---GGGCCGAACCAAAGAGAACCGGG 672
Query 718 AGAGATAACAGCTTTCGATCCTATGGTGCTAGTGGCAAGTATGATCAGGAAGATAGTTAT 777
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 673 AGAGATAACAGCTTTCGATCCTATGGTGCTAGTGGCAAGTATGATCAGGAAGATTGTTAT 732
Query 778 AGTGGGAAAGCTAATGAAGATTACAGTATGTATTCGGGTTATGGTGGTTATGGCGGTTAT 837
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 733 GGTGGGAAAGCTAATGAAGATTACAATATGTATTCGGGTTATGGTGGTTATGGCGGTTAT 792
Query 838 GGAGCCTACGCAGGGAACTCC-atggttaaccctgctggtttttatggttatggtggtgg 896
||||||||||||||||| ||| ||||||||| ||||||| ||||||||||| ||||||||
Sbjct 793 GGAGCCTACGCAGGGAA-TCCCATGGTTAACGCTGCTGGATTTTATGGTTACGGTGGTGG 851
Query 897 gtatggctatggttatggctatggAGGTCAAATGTTCAACATGGGCTATGGAGCTGGCGG 956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 852 GTATGGCTATGGTTATGGCTATGGAGGTCAAATGTTCAACATGGGCTATGGAGCTGGCGG 911
Query 957 TTATAGCCATATGGGTAGTGGCTATGGTGTTGCTGCGGCTGCTGCTTATGGAGGTGGAAA 1016
|||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 912 TTATAGCCATATGGGTGGTGGCTACGGTGTTGCTGCGGCTGCTGCTTATGGAGGTGGAAA 971
Query 1017 ATCTCATGGAAACGGAAATAACGGCTCAAGTAGTGGCAAAGGAAATGGGACTAATGGTTC 1076
| |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 972 AGCTCATGGAAACGGAAACAGCGGCTCAAGTAGTGGCAAAGGAAATGGGACTAATGGTTC 1031
Query 1077 TGGGCCAGATCGATACCATCCTTATCAAAAGTA 1109
|||||||| ||||||||||||||||||||||||
Sbjct 1032 TGGGCCAGCTCGATACCATCCTTATCAAAAGTA 1064
Score = 67.6 bits (36), Expect = 2e-10
Identities = 36/36 (100%), Gaps = 0/36 (0%)
Strand=Plus/Plus
Query 1 ATGGATTATAACTCAGATCGTGGTTATGATGACTCT 36
||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGATTATAACTCAGATCGTGGTTATGATGACTCT 36
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41363364945
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5