BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G17650.1
Length=1242
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471975 jgi|Araly1|471975|fgenesh2_kg.1__1929__AT1G17650.1 1842 0.0
> Ahg471975 jgi|Araly1|471975|fgenesh2_kg.1__1929__AT1G17650.1
Length=1143
Score = 1842 bits (997), Expect = 0.0
Identities = 1096/1144 (96%), Gaps = 6/1144 (1%)
Strand=Plus/Plus
Query 1 TGAGAATTTCGGCCACAGTCTACTAAACAAACGCACTGGCCAGTGGCTATGCC-TTTGGT 59
|||||||||||||||||||||||| ||||||||||||||||| |||| ||||| ||||||
Sbjct 1 TGAGAATTTCGGCCACAGTCTACTTAACAAACGCACTGGCCAATGGCCATGCCTTTTGGT 60
Query 60 TTCATTATCTTTTGCTTCATCTTCTTCAAAAGCCATGGCTTTGTGCTCTA---TCTGTCC 116
|||||||||||||||||| |||||||||| |||||||||||||||||||| |||| ||
Sbjct 61 TTCATTATCTTTTGCTTCTTCTTCTTCAAGAGCCATGGCTTTGTGCTCTATCTTCTGCCC 120
Query 117 TCGCATCCCTCTTCGATTCAGGCCAAAACCCATTTCCCCTTTTCTCTCAAAACCTCAAAT 176
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCGTATCCCTCTTCGATTCAGGCCAAAACCCATTTCCCCTTTTCTCTCAAAACCTCAAAT 180
Query 177 TTGTCTCGCTTACAGGGTTTACTCTTCCCTGCAATCTACTACTCCCTCTACCAGAGATGA 236
||||||| |||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 181 TTGTCTCTCTTATAGGGTTTACTCTTCCCTGCAATCTACTACTCCCTCTACCAAAGATGA 240
Query 237 ACTTGGAACTGTTAGCATTGGGTTTCTGGGTATGGGAATCATGGGTTCTCCAATGGCACA 296
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 241 ACTTGGCACTGTTAGCATTGGGTTTCTTGGTATGGGAATCATGGGTTCTCCAATGGCACA 300
Query 297 GAACCTCATCAAAGCTGGGTGTGATGTGACTGTATGGAATCGAACTAAGAGCAAATGTGA 356
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AAACCTCATCAAAGCTGGGTGTGATGTGACTGTATGGAATCGAACTAAGAGCAAATGTGA 360
Query 357 TCCTCTCGTTGGATTAGGAGCAAAGTACAAGTCTTCTCCTGAAGAAGTGACTGCAACTTG 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TCCTCTCGTTGGATTAGGAGCAAAGTACAAGTCTTCTCCTGAAGAAGTGACTGCAACTTG 420
Query 417 TGATCTCACATTTGCAATGCTTGCTGATCCTGAAAGTGCAATTGATGTTGCATGTGGAAA 476
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 421 TGATCTCACATTTGCAATGCTTGCTGATCCTGAAAGTGCAATTGATGTTGCCTGTGGAAA 480
Query 477 GAATGGAGCCATATTTGGGATTAGTTCAGGAAAAGGGTATGTTGATGTCTCAACCGTTGA 536
||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TAATGGAGCCGTATTTGGAATTAGTTCAGGAAAAGGGTATGTTGATGTCTCAACCGTTGA 540
Query 537 TG-TGGCCTCATCAATACTAATCAGCAAGCAAATAAAGGATACCGGAGCCTTGTTCTTGG 595
|| || ||||||| || |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 541 TGCTG-CCTCATCGATTCTAATCAGCAAGCAAATAAAGGATACCGGAGCATTGTTCTTGG 599
Query 596 AGGCACCAGTTTCAGGTTCCAAAAAGCCTGCCGAAGATGGGCAGTTAATATTTCTCACTG 655
|||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
Sbjct 600 AGGCACCAGTTTCAGGTTCCAAAAAGCCTGCCGAAGATGGGCAGTTGATATTCCTCACAG 659
Query 656 CAGGTGACAAGCCGCTATACGAAAAAGCTGCTCCTTTCTTAGACATCATGGGAAAGTCAA 715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 CAGGTGACAAGCCGCTATACGAAAAAGCTGCTCCTTTCTTAGACATCATGGGAAAGTCAA 719
Query 716 AATTCTATTTGGGTGAAGTTGGTAATGGAGCAGCAATGAAACTTGTCGTCAACATGATCA 775
||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 720 GATTCTATTTGGGTGAAGTTGGTAATGGAGCAGCAATGAAACTTGTTGTCAATATGATCA 779
Query 776 TGGGAAGTATGATGGCATCATTCGCGGAGGGAATACTTCTAAGCCAGAAAGTTGGACTCG 835
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 780 TGGGAAGCATGATGGCATCATTCGCTGAGGGAATACTTCTAAGCCAGAAAGTTGGACTCG 839
Query 836 ATCCAAATGTACTTGTCGAGGTTGTCTCACAGGGAGCTATCAATGCGCCAATGTACTCAC 895
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 840 ATCCAAATGTACTGGTCGAGGTTGTCTCACAGGGAGCTATCAATGCGCCAATGTACTCGC 899
Query 896 TAAAGGGTCCTTCAATGATCAAGTCAGTGTACCCGACGGCTTTTCCATTAAAGCATCAGC 955
|||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||
Sbjct 900 TAAAGGGTCCTTCAATGATCAAGTCAGTTTACCCGACGGCTTTTCCATTAAAACACCAGC 959
Query 956 AGAAGGATATGAGACTCGCACTTGGACTAGCGGAATCCGTATCGCAATCTACTCCGATTG 1015
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 960 AGAAGGATATGAGACTCGCACTTGGACTAGCGGAATCCGTATCTCAATCTACTCCGATTG 1019
Query 1016 CAGCCGCTGCGAACGAGCTTTACAAGGTTGCAAAATCTTATGGGTTGAGCGATGAAGATT 1075
|||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 1020 CAGCGGCTGCGAACGAGCTTTACAAGGTCGCAAAATCTTATGGGTTGAGTGATGAAGATT 1079
Query 1076 TCTCTGCAGTAATTGAAGCACTAAAAGCTGCAAAATCCCGAGAAGCTTAGCTAAAGATTT 1135
|||||||||| ||||||||||| |||||||| |||||| ||||||||||||| |||||||
Sbjct 1080 TCTCTGCAGTTATTGAAGCACTGAAAGCTGCGAAATCCTGAGAAGCTTAGCTGAAGATTT 1139
Query 1136 GTTC 1139
||||
Sbjct 1140 GTTC 1143
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46395589989
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5