BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G17665.1
Length=1196
Score E
Sequences producing significant alignments: (Bits) Value
Ahg911578 jgi|Araly1|911578|Al_scaffold_0001_1832 1463 0.0
> Ahg911578 jgi|Araly1|911578|Al_scaffold_0001_1832
Length=972
Score = 1463 bits (792), Expect = 0.0
Identities = 924/985 (94%), Gaps = 20/985 (2%)
Strand=Plus/Plus
Query 1 ATGGCGGCTCCGCATTTCACACAACTCAAAATTACACTAAACCCTCTCATGTATCCCTTT 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1 ATGGCGGCTCCGCATTTCACACAACTCAAAATTACACTAAACCCTCTCATGTATTCCTTT 60
Query 61 CTCGTCTTATCTCTACTAACTCTCGCCCTCTTCTCATTCGTCTCCGCCATCTTCTTTCTC 120
||| |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 61 CTCATCTTATCTCTACTAACTCTCGCCCTCCTCTTATTCGTCTCCGCCATCTTCTTTCTC 120
Query 121 CTCAAAGCTTCCCGCAGCAGAGCTGCTTTGTACAGCCAGAAACTCTTATCCGAATCCGAA 180
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 121 CTCAAAGCTTCCCGCAGCAGAGCTGCTTCGTACAGCCAGAAACTCTTATCCGAATCCGAA 180
Query 181 ACCAAACTCCAACCAGAATCGTCTCTATCGGAGATTTCCGACGAAGCCCAGTACCAAACC 240
||||||||| ||||||||||||||| | | ||||||| ||||||||||||||||
Sbjct 181 ACCAAACTCGAACCAGAATCGTCTC---C----A--TCCGACGGAGCCCAGTACCAAACC 231
Query 241 CATGAAAATGAACCGACCCATTTGACGAATTCGCGACTCTATGAGTTACTGCTCTCCGAT 300
||||||||||| |||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 232 CATGAAAATGACCCGACCCATTTGACGAATTCGCGAGTCTACGAGTTACTGCTCTCCGAT 291
Query 301 AAGAAGGAGGATGATTCGGATTGGGAAGGAGATCATGTGAAAaag-a-a-gaagaagaag 357
||||| | || ||||||||||||||||||||||||||||||||| | | ||||||||||
Sbjct 292 AAGAA--A-GAGGATTCGGATTGGGAAGGAGATCATGTGAAAAAGAAGACGAAGAAGAAG 348
Query 358 aagaagaatcgaggtaagaagaagaaatcagacataagaggagaTGAATCCGGCGGCGAA 417
|||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 349 AAGAAGAAGCGAGGTAAGAAGAAGAAATCAGACCTAAGAGGAGATGAATCCGGCGGCGAA 408
Query 418 AAGCAGCTCGGTGAGGGAGAAGATGGGCTTGTTTTGAATCCGAGGACAGACTCGATTTCG 477
||||||||||| || || ||||||| ||||| ||||||||||||| | ||||||||||
Sbjct 409 AAGCAGCTCGGCGA---AGGAGATGGGGTTGTTATGAATCCGAGGACTGGCTCGATTTCG 465
Query 478 ATATCGGAAAACAAACCGGAGTTTGTTTGTTTATATCCTTTTACATCGACGAGCAGTGCT 537
||||||||||| ||||| |||||||||||||| || || ||||| |||||||||||||||
Sbjct 466 ATATCGGAAAAGAAACCAGAGTTTGTTTGTTTGTACCCATTTACCTCGACGAGCAGTGCT 525
Query 538 ACGCAGAGGAAGATTAAGCAGCAATACGATCAGCTTGTTAAATGCAATAATGCCAAAGGA 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 526 ACGCAGAGGAAGATTAAGCAGCAATACGATCAGCTTGTTAAATGCAATAATGCCAAAGGA 585
Query 598 TTGACACTAGCTCAGGTTGGGGAGTTTGCTAATTGTTTGATAGAAGCCAAAAATGAACTA 657
|||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||
Sbjct 586 TTGACACTAGCTCAGGTTGGAGAGTTTGCTAATTGTTTGATACAAGCCAAAAATGAGCTA 645
Query 658 CAACACAAGTCAGAAGTAATCAAGCGCAAGTTTTCAATAACAAAAGCCCTTCTCTTT-AA 716
|| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||
Sbjct 646 CAGCACAAGTCAGAAGTAATCAAGCGCAAGTTTTCAATAACCAAAGCCCTTCT-TTTCAA 704
Query 717 GGCTGATAGATCTTCCTTTGACCGACTTCGTCAACAGATCTATAAGCTGGAGATGGAACA 776
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 705 GGCTGATAGATCTTCCTTTGACCGACTTCGTCAACAGATCTATAAGCTAGAGATGGAACA 764
Query 777 AAAAAGAGTAGAAGAAGATGCACTTGTATATAATTGGCTCCAGCAACAGCTTAAACTCTC 836
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 765 AAAAAGAGTAGAAGAAGATGCACTTGTATATAATTGGCTCCAGCAACAGCTAAAACTTTC 824
Query 837 ACCTGCATACAAAAAGGTTCTTGAAATAAGCGCTTCCATGGAACTCAAAGACAAATCGAG 896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 825 ACCTGCATACAAAAAGGTTCTTGAAATAAGCGCTTCCATGGAACTCAAAGACAAATCGAG 884
Query 897 CACAGAGTTAGACAATCCAGATGATGAATTTTCAGACATTTCCTTCGAAGAGCTATTGGA 956
| ||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||
Sbjct 885 TATAGAGTTAGACAATCCTGATGATGAATTTTCAGACATCTCCTTCGAAGAGCTACTGGA 944
Query 957 ACAGGAAAAGAAAGACTCGTTTTGG 981
|||||| |||||||| || ||||||
Sbjct 945 ACAGGAGAAGAAAGATTCCTTTTGG 969
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44641935807
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5