BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G17690.1 Length=2571 Score E Sequences producing significant alignments: (Bits) Value Ahg471979 jgi|Araly1|471979|fgenesh2_kg.1__1933__AT1G17690.1 3544 0.0 > Ahg471979 jgi|Araly1|471979|fgenesh2_kg.1__1933__AT1G17690.1 Length=2487 Score = 3544 bits (1919), Expect = 0.0 Identities = 2258/2414 (94%), Gaps = 53/2414 (2%) Strand=Plus/Plus Query 130 CAAGGCTCAACATCTCCTATAATCTCTTTCTCTGCACCAGTTAACTTCC-CTAAGATGGC 188 ||| ||||||||||||| ||||||||||||||||||||| ||| ||||| | ||||||| Sbjct 89 CAA-GCTCAACATCTCCCATAATCTCTTTCTCTGCACCACTTAGCTTCCAC-AAGATGGA 146 Query 189 TCCAAACGCTACTGGAGTCTTGAAGAGGCACAGGTCCCATGAGAAATTCGATAAGAAACG 248 |||||||||| |||||||| ||||||| |||||||| ||||||||||||||||||||| | Sbjct 147 TCCAAACGCTGCTGGAGTCATGAAGAGACACAGGTCACATGAGAAATTCGATAAGAAAAG 206 Query 249 AGATACGAAGAAGCACAAACATGTTGAAAAGAC-GATTGTTTCCAATCCTTC-----A-- 300 |||||||||||||||||||||||||||||| | | |||||||||||||||| | Sbjct 207 GGATACGAAGAAGCACAAACATGTTGAAAAGGCTG-TTGTTTCCAATCCTTCAATAGAGG 265 Query 301 A--CAGATTCACCTGAAGAATCCTCTATAGAGGCTGAATCGGAAGCAATGGTTTACAGAG 358 | ||||||||||||||||| | | || ||| ||||||||||||||||| ||| ||||| Sbjct 266 ATCCAGATTCACCTGAAGAAGACACCATTGAGACTGAATCGGAAGCAATGCTTTTCAGAG 325 Query 359 AACCGACACAGTACCAAAATTTGCTGG-TGTCTCTTGGTTCATCTAACAAGGTTGTTGCT 417 ||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||| Sbjct 326 AACCGACACAGTACCAACATTTGCTGGCT-TCTCTTGGTTCATCTAACAAGGTTGTTGCT 384 Query 418 GATATGAACAAAAGAAGGCAGAGAGAGGAAGAAGGTAAAAGTGACACAGAAGAAGATGAG 477 ||||||||||||||||||||||||||||| ||||||||||||||||| | Sbjct 385 GATATGAACAAAAGAAGGCAGAGAGAGGAGGAAGGTAAAAGTGACAC-----------A- 432 Query 478 GACGATGAAGATGAGGATGAGGAGGAAAACAGTGGGTCTGACGATTTAAGCTCTACTGAT 537 || | ||||||||||||||||||||||||||||||||||| ||||||||||||| |||| Sbjct 433 GA--A-GAAGATGAGGATGAGGAGGAAAACAGTGGGTCTGAGGATTTAAGCTCTATTGAT 489 Query 538 GGGGAGGATGATAAGAGTCAAGGGGATGATCAGGAAACTCTCGGAGGTCTTACGGACGAC 597 |||||||||||||||| ||||||||||||||||||||||||| ||||||||| || | Sbjct 490 GGGGAGGATGATAAGATTCAAGGGGATGATCAGGAAACTCTCAGAGGTCTTA-TGATG-- 546 Query 598 ACGCAGGAAGACAATGATAATCAGAGTGAGGAAGAAGATCCTGACGACTATGAAACGGAT 657 | | || ||||||||||||| ||||| |||||||||||||||||||||||||||||| Sbjct 547 --G-A--AA-ACAATGATAATCAAAGTGAAGAAGAAGATCCTGACGACTATGAAACGGAT 600 Query 658 GAGGAGGTGCATGAGTTGAGTACCAATGGCCAATCCTTTGTAGATGCTTCTTCATCTATT 717 ||||| |||||| |||||||||||||||||||||||||||||||||||||||||| || Sbjct 601 GAGGA---GCATGACTTGAGTACCAATGGCCAATCCTTTGTAGATGCTTCTTCATCTGTT 657 Query 718 AGTGCATTTAGTGAGCACCTTAGCCACAAATTATCCAGTGAAGAAGTGGAA-ACTTTACC 776 ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| Sbjct 658 AGTGCATTTAGTGAGCACCTTAGCCACAAATTATCCAGTGAAGAAGT-GAACACTTTACC 716 Query 777 AAAAGGCAAGTGGAAGTTTAAATGGGAATCACCTGCCTTTGACATGCCAAATTGCAAATG 836 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| Sbjct 717 AAAAGGCAAGTGGAAATTTAAATGGGAATCACCTGCCTTTGACATGCCAAATTGCAGATG 776 Query 837 GAAAGGAACGAGTGAAAATTTTCTTGATGGTATTCAGAGTGATGCACCTTACGGCCTCAA 896 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 777 GAAAGGAACGAGTGAAAATTTTCTTGATGGTATTCAGAGTGATGCAACTTACGGCCTCAA 836 Query 897 GCCGAAGTTATATAATCACTGGCTGCAATTGTACAAAAAATGTGGAGGCAAAGATTTGGA 956 ||| ||||||||||| |||||||| ||||| |||||||||| |||||||||||||||||| Sbjct 837 GCCTAAGTTATATAAGCACTGGCTTCAATTATACAAAAAATCTGGAGGCAAAGATTTGGA 896 Query 957 CTCATCTAAGAGGAGAAAATTCTTCTCTATTTGCAACAGCTATCTGGATATATTGCATTC 1016 ||||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||| Sbjct 897 CTCATCTAAAAGGAGAAAATTCTTCTCCATTTGCAACAACTATCTGGATATATTGCATTC 956 Query 1017 TAACAAGAAACCCTTTTACCATTGTGGCTCTGACGAAGACTCAAGTGCCATGGATGCGTA 1076 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 957 TAACAAGAAACCCTTTTACCATAGTGGCTCTGACGAAGACTCAAGTGCCATGGATGCGTA 1016 Query 1077 CCTTATGCATTCTTTGAATCACATCTTTAAAACTAGAGATCTAGTGAAGAAGAATGAAAG 1136 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1017 CCTTATGCATTCTTTGAATCACATCTTTAAAACTAGAGATCTTGTGAAGAAGAATGAAAG 1076 Query 1137 TAAAATCGCCAAGCATCGAGAGACCTCCGAAGAAGAAATTCTTTCTGATGATGGATTTCT 1196 |||||| |||||||||||||||||||| ||||| |||||||| ||||||||||||||||| Sbjct 1077 TAAAATTGCCAAGCATCGAGAGACCTCTGAAGAGGAAATTCTCTCTGATGATGGATTTCT 1136 Query 1197 GGACCAAGGATTTACTCGTCCAAAGGTCCTGATTCTATTACCATTGAGGAGCATTGCCTT 1256 ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| Sbjct 1137 GGACCAAGGATTTACTCGTCCAAAGGTACTGATTCTATTACCGTTGAGGAGCATTGCCTT 1196 Query 1257 TCGCGTTGTTAAGAGGCTCATACAACTAACTCCGGAATCTCAAAGGGTTAATGTAGAACA 1316 ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| Sbjct 1197 TCGCGTTGTTAAGAGGCTCATCCAACTAACTCCGGAATCTCAAAGGGTTAGTGTAGAACA 1256 Query 1317 CCTTGACCGGTTTAATGATGAGTTTGGATGTGAAGAGGATACTGATGACTGTGATGGT-G 1375 ||||||||||||||| |||||||||||||||||||||| |||||||||| ||||| || | Sbjct 1257 CCTTGACCGGTTTAACGATGAGTTTGGATGTGAAGAGGCTACTGATGACGGTGAT-GTGG 1315 Query 1376 AAAAGACTACATCGAAAAATGGAAACTCAATCAAACAAAAGTCTTCAAAACCTTCTGACT 1435 |||||| |||||| |||||||||||||||| || ||| |||||||||||||||||||| | Sbjct 1316 AAAAGAATACATCAAAAAATGGAAACTCAACCACACAGAAGTCTTCAAAACCTTCTGATT 1375 Query 1436 GGCAAGCCCTTTTTGGTGCGAATAACAACGATGATGAGTTTATGTTAGGCATTAAACATA 1495 ||||| |||| |||||||||| |||||||||||||||||| ||| |||||||||| |||| Sbjct 1376 GGCAATCCCTCTTTGGTGCGAGTAACAACGATGATGAGTTCATGCTAGGCATTAAGCATA 1435 Query 1496 CAAGGAAGAGTATTAGGCTATATGGTGATTTTTATTCCTCAGACATTATAGTTGCTTCCC 1555 |||||||||| |||||||| |||||||||||||||||||||||||||||| ||||||||| Sbjct 1436 CAAGGAAGAGCATTAGGCTGTATGGTGATTTTTATTCCTCAGACATTATAATTGCTTCCC 1495 Query 1556 CTCTCAAGTTACATATGGCCATTGGTGC-AGCAGAAGAAAACAAGGAACGGGATGTTGAT 1614 ||||||||||||| |||||||||||| | ||||||||||||||||||||||||||||||| Sbjct 1496 CTCTCAAGTTACAAATGGCCATTGGT-CAAGCAGAAGAAAACAAGGAACGGGATGTTGAT 1554 Query 1615 TATCTTTCTTCCATAGAGGTTTTGGTTATCGATCATGCAGACATAATATCTATGCAGAAT 1674 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1555 TATCTTTCCTCCATAGAGGTTTTGGTTATCGATCATGCAGACATAATATCTATGCAGAAT 1614 Query 1675 TGGTCGTTCCTTGCTACAGTCGTTGACT-ACTTAAATAGATTGCCAACAAAACAACATGG 1733 ||||| |||||||||||||||||||| | ||||||||||||||||| ||||||||||||| Sbjct 1615 TGGTCATTCCTTGCTACAGTCGTTGA-TCACTTAAATAGATTGCCATCAAAACAACATGG 1673 Query 1734 AACCAATGTCATGCGAATTCGGCCGTTGTATCTGGATGGACATGCAAGGTTTTATCGCCA 1793 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1674 AACCAATGTCATGCGAATTCGGCCGTTGTATCTGGATGGACATGCAAGGTTTTATCGCCA 1733 Query 1794 GTCAATAATTCTAAGTTCTTATTTAACTCCGGAGATGAATTCTCTATTCGGTCGCCACTG 1853 ||||||||||||||||||||||||||| || |||||||||||||||||| ||||||||| Sbjct 1734 GTCAATAATTCTAAGTTCTTATTTAACCCCAGAGATGAATTCTCTATTCAATCGCCACTG 1793 Query 1854 CTTGAACTATAAGGGAAAGATGAAGATGGCGTGTGAATACAAGGGTGTTCTTGAGAAAGT 1913 |||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1794 CTTGAACTATAAAGGAAAGATGAAGCTGGCGTGTGAATACAAGGGTGTTCTTGAGAAAGT 1853 Query 1914 GTTGCTCCCTGTCCGTCAGATTTATGAAAGATTTGATGCAGCCTCCATAACCCAAGTGGA 1973 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1854 GTTGCTCCCTGTCCGTCAGATTTATGAAAGATTTGATGCAGACTCCATAACCCAAGTGGA 1913 Query 1974 CGATGCACGTCTTGAATATTTTACCAAAAAGATTTTCCCAAAGATTAAAGATTCTGTTCA 2033 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1914 CGATGCACGTCTTGAATATTTTACCAAAAAGATTTTCCCAAAGATTAGAGATTCTGTTCA 1973 Query 2034 GGGAGGAGTAATGATCTTTATCCATTCTTACTTCGAGTTCGTCAGGCTTAGAAACTTTTT 2093 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1974 GGGAGGAGTAATGATCTTTATCCATTCTTACTTCGAGTTCGTCAGGCTTAGAAACTTTTT 2033 Query 2094 GAATACGCAGAATACCTCTTTCTGTCTTCTTGGAGATTATGCAAAAAATGCAGATATATC 2153 |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 2034 AAATACGCAGAATACCTCTTTCTGTCTTCTTGGAGATTATGCAAAAAATGCTGATATATC 2093 Query 2154 CCGAGCAAGAGAACAGTTTTTTGTAGGGAGCCGAAAGATCATGCTTTACACTGAGAGAGC 2213 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2094 CCGAGCAAGAGAACGGTTTTTTGTAGGGAGCCGAAAGATCATGCTTTACACTGAGAGAGC 2153 Query 2214 ATACTTTTATAAGAGATACAAGATCCGTGGTATAAAGAACTTAATCTTATATTCTCTTCC 2273 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 2154 ATACTTTTATAAGAGATACAAGATCCGTGGTATAAAGAACTTAATCTTCTATTCTCTTCC 2213 Query 2274 GGAGCGGAAGGAGTTTTACCCTGAGATAATGAACATGCTTGAAGAAGGATCACATGACAT 2333 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 2214 GGAGCGGAAGGAGTTTTACCCTGAGATAATGAACATGCTTGAAGAAGGATCACATGAGAT 2273 Query 2334 GATGTCCACTGCACTTTTTTCTCGTTTTGATATGCTCCAGCTGGAAAGGATCGTTGGCTC 2393 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2274 GATGTCCACTGCACTTTTTTCTCGTTTTGATATGCTCCAGCTGGAAAGGATCGTTGGCTC 2333 Query 2394 TACTTCCGCAAAGAGAATGATCACTTCTGAGAAGAACATGTTTGCTTTCTGTTAAGAAAC 2453 ||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||||| Sbjct 2334 TACTTCCGCAACGAGAATGATCAGTTCTGAGAAGAACATGTTTGCTTTTTGTTAAGAAAC 2393 Query 2454 AAAATAGTCGATATCTATTTGTTT-GGTGATCTTGATCGCCCAGTTTTGATTATGCTATT 2512 ||||||| | ||||| | ||| ||||||||| ||||||||||||||||| | | ||| Sbjct 2394 TAAATAGTTTAG-TCTATCTATTTTGGTGATCTTAATCGCCCAGTTTTGATTCTACCATT 2452 Query 2513 TTCTTTGTTCAGAC 2526 ||| |||||||| Sbjct 2453 TTCAGAGTTCAGAC 2466 Score = 132 bits (71), Expect = 2e-29 Identities = 83/88 (94%), Gaps = 3/88 (3%) Strand=Plus/Plus Query 9 GGGTTTTAATCTGCTCGGCCGCCGCTTTATTTTTCAGACCAAACCTACGAACTTCGTTTT 68 ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| Sbjct 1 GGGTTTTAATCTGCTCGGCCGCCGCTTTA-TTTTCAGACCAAACCTATGAACTTCGTTTT 59 Query 69 GAGGCAGTTTTTTCTGACAGCTAAAATC 96 ||||||||||||| | ||| |||||||| Sbjct 60 GAGGCAGTTTTTT-T-ACAACTAAAATC 85 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 96939673525 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5