BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G17690.1
Length=2571
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471979 jgi|Araly1|471979|fgenesh2_kg.1__1933__AT1G17690.1 3544 0.0
> Ahg471979 jgi|Araly1|471979|fgenesh2_kg.1__1933__AT1G17690.1
Length=2487
Score = 3544 bits (1919), Expect = 0.0
Identities = 2258/2414 (94%), Gaps = 53/2414 (2%)
Strand=Plus/Plus
Query 130 CAAGGCTCAACATCTCCTATAATCTCTTTCTCTGCACCAGTTAACTTCC-CTAAGATGGC 188
||| ||||||||||||| ||||||||||||||||||||| ||| ||||| | |||||||
Sbjct 89 CAA-GCTCAACATCTCCCATAATCTCTTTCTCTGCACCACTTAGCTTCCAC-AAGATGGA 146
Query 189 TCCAAACGCTACTGGAGTCTTGAAGAGGCACAGGTCCCATGAGAAATTCGATAAGAAACG 248
|||||||||| |||||||| ||||||| |||||||| ||||||||||||||||||||| |
Sbjct 147 TCCAAACGCTGCTGGAGTCATGAAGAGACACAGGTCACATGAGAAATTCGATAAGAAAAG 206
Query 249 AGATACGAAGAAGCACAAACATGTTGAAAAGAC-GATTGTTTCCAATCCTTC-----A-- 300
|||||||||||||||||||||||||||||| | | |||||||||||||||| |
Sbjct 207 GGATACGAAGAAGCACAAACATGTTGAAAAGGCTG-TTGTTTCCAATCCTTCAATAGAGG 265
Query 301 A--CAGATTCACCTGAAGAATCCTCTATAGAGGCTGAATCGGAAGCAATGGTTTACAGAG 358
| ||||||||||||||||| | | || ||| ||||||||||||||||| ||| |||||
Sbjct 266 ATCCAGATTCACCTGAAGAAGACACCATTGAGACTGAATCGGAAGCAATGCTTTTCAGAG 325
Query 359 AACCGACACAGTACCAAAATTTGCTGG-TGTCTCTTGGTTCATCTAACAAGGTTGTTGCT 417
||||||||||||||||| ||||||||| | ||||||||||||||||||||||||||||||
Sbjct 326 AACCGACACAGTACCAACATTTGCTGGCT-TCTCTTGGTTCATCTAACAAGGTTGTTGCT 384
Query 418 GATATGAACAAAAGAAGGCAGAGAGAGGAAGAAGGTAAAAGTGACACAGAAGAAGATGAG 477
||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 385 GATATGAACAAAAGAAGGCAGAGAGAGGAGGAAGGTAAAAGTGACAC-----------A- 432
Query 478 GACGATGAAGATGAGGATGAGGAGGAAAACAGTGGGTCTGACGATTTAAGCTCTACTGAT 537
|| | ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 433 GA--A-GAAGATGAGGATGAGGAGGAAAACAGTGGGTCTGAGGATTTAAGCTCTATTGAT 489
Query 538 GGGGAGGATGATAAGAGTCAAGGGGATGATCAGGAAACTCTCGGAGGTCTTACGGACGAC 597
|||||||||||||||| ||||||||||||||||||||||||| ||||||||| || |
Sbjct 490 GGGGAGGATGATAAGATTCAAGGGGATGATCAGGAAACTCTCAGAGGTCTTA-TGATG-- 546
Query 598 ACGCAGGAAGACAATGATAATCAGAGTGAGGAAGAAGATCCTGACGACTATGAAACGGAT 657
| | || ||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 547 --G-A--AA-ACAATGATAATCAAAGTGAAGAAGAAGATCCTGACGACTATGAAACGGAT 600
Query 658 GAGGAGGTGCATGAGTTGAGTACCAATGGCCAATCCTTTGTAGATGCTTCTTCATCTATT 717
||||| |||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 601 GAGGA---GCATGACTTGAGTACCAATGGCCAATCCTTTGTAGATGCTTCTTCATCTGTT 657
Query 718 AGTGCATTTAGTGAGCACCTTAGCCACAAATTATCCAGTGAAGAAGTGGAA-ACTTTACC 776
||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 658 AGTGCATTTAGTGAGCACCTTAGCCACAAATTATCCAGTGAAGAAGT-GAACACTTTACC 716
Query 777 AAAAGGCAAGTGGAAGTTTAAATGGGAATCACCTGCCTTTGACATGCCAAATTGCAAATG 836
||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 717 AAAAGGCAAGTGGAAATTTAAATGGGAATCACCTGCCTTTGACATGCCAAATTGCAGATG 776
Query 837 GAAAGGAACGAGTGAAAATTTTCTTGATGGTATTCAGAGTGATGCACCTTACGGCCTCAA 896
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 777 GAAAGGAACGAGTGAAAATTTTCTTGATGGTATTCAGAGTGATGCAACTTACGGCCTCAA 836
Query 897 GCCGAAGTTATATAATCACTGGCTGCAATTGTACAAAAAATGTGGAGGCAAAGATTTGGA 956
||| ||||||||||| |||||||| ||||| |||||||||| ||||||||||||||||||
Sbjct 837 GCCTAAGTTATATAAGCACTGGCTTCAATTATACAAAAAATCTGGAGGCAAAGATTTGGA 896
Query 957 CTCATCTAAGAGGAGAAAATTCTTCTCTATTTGCAACAGCTATCTGGATATATTGCATTC 1016
||||||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 897 CTCATCTAAAAGGAGAAAATTCTTCTCCATTTGCAACAACTATCTGGATATATTGCATTC 956
Query 1017 TAACAAGAAACCCTTTTACCATTGTGGCTCTGACGAAGACTCAAGTGCCATGGATGCGTA 1076
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 957 TAACAAGAAACCCTTTTACCATAGTGGCTCTGACGAAGACTCAAGTGCCATGGATGCGTA 1016
Query 1077 CCTTATGCATTCTTTGAATCACATCTTTAAAACTAGAGATCTAGTGAAGAAGAATGAAAG 1136
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1017 CCTTATGCATTCTTTGAATCACATCTTTAAAACTAGAGATCTTGTGAAGAAGAATGAAAG 1076
Query 1137 TAAAATCGCCAAGCATCGAGAGACCTCCGAAGAAGAAATTCTTTCTGATGATGGATTTCT 1196
|||||| |||||||||||||||||||| ||||| |||||||| |||||||||||||||||
Sbjct 1077 TAAAATTGCCAAGCATCGAGAGACCTCTGAAGAGGAAATTCTCTCTGATGATGGATTTCT 1136
Query 1197 GGACCAAGGATTTACTCGTCCAAAGGTCCTGATTCTATTACCATTGAGGAGCATTGCCTT 1256
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 1137 GGACCAAGGATTTACTCGTCCAAAGGTACTGATTCTATTACCGTTGAGGAGCATTGCCTT 1196
Query 1257 TCGCGTTGTTAAGAGGCTCATACAACTAACTCCGGAATCTCAAAGGGTTAATGTAGAACA 1316
||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 1197 TCGCGTTGTTAAGAGGCTCATCCAACTAACTCCGGAATCTCAAAGGGTTAGTGTAGAACA 1256
Query 1317 CCTTGACCGGTTTAATGATGAGTTTGGATGTGAAGAGGATACTGATGACTGTGATGGT-G 1375
||||||||||||||| |||||||||||||||||||||| |||||||||| ||||| || |
Sbjct 1257 CCTTGACCGGTTTAACGATGAGTTTGGATGTGAAGAGGCTACTGATGACGGTGAT-GTGG 1315
Query 1376 AAAAGACTACATCGAAAAATGGAAACTCAATCAAACAAAAGTCTTCAAAACCTTCTGACT 1435
|||||| |||||| |||||||||||||||| || ||| |||||||||||||||||||| |
Sbjct 1316 AAAAGAATACATCAAAAAATGGAAACTCAACCACACAGAAGTCTTCAAAACCTTCTGATT 1375
Query 1436 GGCAAGCCCTTTTTGGTGCGAATAACAACGATGATGAGTTTATGTTAGGCATTAAACATA 1495
||||| |||| |||||||||| |||||||||||||||||| ||| |||||||||| ||||
Sbjct 1376 GGCAATCCCTCTTTGGTGCGAGTAACAACGATGATGAGTTCATGCTAGGCATTAAGCATA 1435
Query 1496 CAAGGAAGAGTATTAGGCTATATGGTGATTTTTATTCCTCAGACATTATAGTTGCTTCCC 1555
|||||||||| |||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct 1436 CAAGGAAGAGCATTAGGCTGTATGGTGATTTTTATTCCTCAGACATTATAATTGCTTCCC 1495
Query 1556 CTCTCAAGTTACATATGGCCATTGGTGC-AGCAGAAGAAAACAAGGAACGGGATGTTGAT 1614
||||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 1496 CTCTCAAGTTACAAATGGCCATTGGT-CAAGCAGAAGAAAACAAGGAACGGGATGTTGAT 1554
Query 1615 TATCTTTCTTCCATAGAGGTTTTGGTTATCGATCATGCAGACATAATATCTATGCAGAAT 1674
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 TATCTTTCCTCCATAGAGGTTTTGGTTATCGATCATGCAGACATAATATCTATGCAGAAT 1614
Query 1675 TGGTCGTTCCTTGCTACAGTCGTTGACT-ACTTAAATAGATTGCCAACAAAACAACATGG 1733
||||| |||||||||||||||||||| | ||||||||||||||||| |||||||||||||
Sbjct 1615 TGGTCATTCCTTGCTACAGTCGTTGA-TCACTTAAATAGATTGCCATCAAAACAACATGG 1673
Query 1734 AACCAATGTCATGCGAATTCGGCCGTTGTATCTGGATGGACATGCAAGGTTTTATCGCCA 1793
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1674 AACCAATGTCATGCGAATTCGGCCGTTGTATCTGGATGGACATGCAAGGTTTTATCGCCA 1733
Query 1794 GTCAATAATTCTAAGTTCTTATTTAACTCCGGAGATGAATTCTCTATTCGGTCGCCACTG 1853
||||||||||||||||||||||||||| || |||||||||||||||||| |||||||||
Sbjct 1734 GTCAATAATTCTAAGTTCTTATTTAACCCCAGAGATGAATTCTCTATTCAATCGCCACTG 1793
Query 1854 CTTGAACTATAAGGGAAAGATGAAGATGGCGTGTGAATACAAGGGTGTTCTTGAGAAAGT 1913
|||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1794 CTTGAACTATAAAGGAAAGATGAAGCTGGCGTGTGAATACAAGGGTGTTCTTGAGAAAGT 1853
Query 1914 GTTGCTCCCTGTCCGTCAGATTTATGAAAGATTTGATGCAGCCTCCATAACCCAAGTGGA 1973
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1854 GTTGCTCCCTGTCCGTCAGATTTATGAAAGATTTGATGCAGACTCCATAACCCAAGTGGA 1913
Query 1974 CGATGCACGTCTTGAATATTTTACCAAAAAGATTTTCCCAAAGATTAAAGATTCTGTTCA 2033
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1914 CGATGCACGTCTTGAATATTTTACCAAAAAGATTTTCCCAAAGATTAGAGATTCTGTTCA 1973
Query 2034 GGGAGGAGTAATGATCTTTATCCATTCTTACTTCGAGTTCGTCAGGCTTAGAAACTTTTT 2093
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1974 GGGAGGAGTAATGATCTTTATCCATTCTTACTTCGAGTTCGTCAGGCTTAGAAACTTTTT 2033
Query 2094 GAATACGCAGAATACCTCTTTCTGTCTTCTTGGAGATTATGCAAAAAATGCAGATATATC 2153
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2034 AAATACGCAGAATACCTCTTTCTGTCTTCTTGGAGATTATGCAAAAAATGCTGATATATC 2093
Query 2154 CCGAGCAAGAGAACAGTTTTTTGTAGGGAGCCGAAAGATCATGCTTTACACTGAGAGAGC 2213
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2094 CCGAGCAAGAGAACGGTTTTTTGTAGGGAGCCGAAAGATCATGCTTTACACTGAGAGAGC 2153
Query 2214 ATACTTTTATAAGAGATACAAGATCCGTGGTATAAAGAACTTAATCTTATATTCTCTTCC 2273
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2154 ATACTTTTATAAGAGATACAAGATCCGTGGTATAAAGAACTTAATCTTCTATTCTCTTCC 2213
Query 2274 GGAGCGGAAGGAGTTTTACCCTGAGATAATGAACATGCTTGAAGAAGGATCACATGACAT 2333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2214 GGAGCGGAAGGAGTTTTACCCTGAGATAATGAACATGCTTGAAGAAGGATCACATGAGAT 2273
Query 2334 GATGTCCACTGCACTTTTTTCTCGTTTTGATATGCTCCAGCTGGAAAGGATCGTTGGCTC 2393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2274 GATGTCCACTGCACTTTTTTCTCGTTTTGATATGCTCCAGCTGGAAAGGATCGTTGGCTC 2333
Query 2394 TACTTCCGCAAAGAGAATGATCACTTCTGAGAAGAACATGTTTGCTTTCTGTTAAGAAAC 2453
||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 2334 TACTTCCGCAACGAGAATGATCAGTTCTGAGAAGAACATGTTTGCTTTTTGTTAAGAAAC 2393
Query 2454 AAAATAGTCGATATCTATTTGTTT-GGTGATCTTGATCGCCCAGTTTTGATTATGCTATT 2512
||||||| | ||||| | ||| ||||||||| ||||||||||||||||| | | |||
Sbjct 2394 TAAATAGTTTAG-TCTATCTATTTTGGTGATCTTAATCGCCCAGTTTTGATTCTACCATT 2452
Query 2513 TTCTTTGTTCAGAC 2526
||| ||||||||
Sbjct 2453 TTCAGAGTTCAGAC 2466
Score = 132 bits (71), Expect = 2e-29
Identities = 83/88 (94%), Gaps = 3/88 (3%)
Strand=Plus/Plus
Query 9 GGGTTTTAATCTGCTCGGCCGCCGCTTTATTTTTCAGACCAAACCTACGAACTTCGTTTT 68
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1 GGGTTTTAATCTGCTCGGCCGCCGCTTTA-TTTTCAGACCAAACCTATGAACTTCGTTTT 59
Query 69 GAGGCAGTTTTTTCTGACAGCTAAAATC 96
||||||||||||| | ||| ||||||||
Sbjct 60 GAGGCAGTTTTTT-T-ACAACTAAAATC 85
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96939673525
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5