BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G17700.1
Length=807
Score E
Sequences producing significant alignments: (Bits) Value
Ahg920693 jgi|Araly1|920693|scaffold_101974.1 822 0.0
> Ahg920693 jgi|Araly1|920693|scaffold_101974.1
Length=583
Score = 822 bits (445), Expect = 0.0
Identities = 538/584 (92%), Gaps = 2/584 (0%)
Strand=Plus/Plus
Query 52 TCACGAAGGAGAAAAACAATATGACAACATATGGCACCAATCAGAAGTCGTCTAACGACT 111
|||| || |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1 TCACAAAAGAGAAAAACAATATGACAACATATGGCACCAATCCGAAGTCGTCTAACGACT 60
Query 112 TAGCCCCCAAGCTGGAGTACATCACCCGTGGCATCAACCAACACAAAAGATCCGGCCTCG 171
||||||| || || |||||||||||||| ||||| |||||||| ||||||||||| ||||
Sbjct 61 TAGCCCCAAAACTCGAGTACATCACCCGCGGCATTAACCAACAAAAAAGATCCGGTCTCG 120
Query 172 CCACGCGCCGCCCTTGGAAGCAAATGCTAGACCTCGGTTCCTTCAACTTCCCCCGCAAAC 231
|||||||||||||||||||||||||||| |||||||| || |||||||||||||||||||
Sbjct 121 CCACGCGCCGCCCTTGGAAGCAAATGCTCGACCTCGGCTCATTCAACTTCCCCCGCAAAC 180
Query 232 TAGCCACCGTGATCACTAGAATCAGAGCCAACACGGTCTATTTCCAGACCAATTACACCA 291
||||||||||||||| |||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 181 TAGCCACCGTGATCAGTAGAATCAGAGCCAACACCGTCTACTTCCAGACCAATTACACCA 240
Query 292 TTGTCGTCCTCTTCTCCGTATTTCTCAGCCTGATTTGGAATCCCTTCTCCCTCTTAGTTC 351
||||||||||||||||||||| |||||| |||||||||||||||||||||||| || | |
Sbjct 241 TTGTCGTCCTCTTCTCCGTATCTCTCAGTCTGATTTGGAATCCCTTCTCCCTCCTAATCC 300
Query 352 TACTCGCCCTACTCGGTGCATGGCTCTTCCTCTACTTCCTCCGTGATGAACCGCTCACTG 411
|| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 301 TAATCGCCCTACTCGGCGCATGGCTCTTCCTCTACTTCCTCCGTGATGAACCGCTCGCTG 360
Query 412 TTTTTGACCGCGAGATTGACCACCGTATCGTACTTATAATCATGTCTGTTATCACTCTTT 471
| |||||||| ||||| |||||||||||||||||||| ||||||| ||| |||||||||
Sbjct 361 TGTTTGACCGAGAGATCGACCACCGTATCGTACTTATCGTCATGTCCGTTCTCACTCTTT 420
Query 472 CCATCCtttttttAACTGATGCGAAGCTCAATATCGCGGTGGCCATCGTGGCAGGTGCCT 531
| |||||||| ||||| ||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 421 CGATCCTTTTCTTAACCGATGCTAAGCTCAATATTGCGGTGGCCATCGTGGCAGGTGCCG 480
Query 532 TGGCTGTGTTGTCTCATGCAGCTGTTAGGAAAACTGAAGATCTTTTCCAAACCGACGAAG 591
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 481 CGGCTGTGTTGTCTCATGCAGCTGTTAGGAAAACTGAAGATCTTTACCAAACCGACGAAG 540
Query 592 AAACCAGTCTTTTAAATCCGTAAAAAGTTTA-ATATCAACTGTT 634
||||||||||||||||||| ||| | |||| | ||||| ||||
Sbjct 541 AAACCAGTCTTTTAAATCCCTAATTATTTTACA-ATCAAATGTT 583
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29812121094
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5