BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G17710.1
Length=1095
Score E
Sequences producing significant alignments: (Bits) Value
Ahg920694 jgi|Araly1|920694|scaffold_101975.1 1323 0.0
> Ahg920694 jgi|Araly1|920694|scaffold_101975.1
Length=901
Score = 1323 bits (716), Expect = 0.0
Identities = 847/906 (93%), Gaps = 25/906 (3%)
Strand=Plus/Plus
Query 26 TACCTATA-AAACA-TTGTATCTGATAGAATGGCTAAGA-ATAACAACATCGTGATCGTC 82
|||||||| ||| | || | |||| ||||||||||| | | ||||||||||||||||||
Sbjct 2 TACCTATAGAAA-AGTT-TCTCTG--AGAATGGCTAACAGA-AACAACATCGTGATCGTC 56
Query 83 TTCGATTTTGACAAGACAATCATCGATGTAGACAGCGATAATTGGGTCGTGGATGAACTT 142
|| |||||||||||||||||||||||||||||||| ||||||||||| || |||||||||
Sbjct 57 TTTGATTTTGACAAGACAATCATCGATGTAGACAGTGATAATTGGGTTGTCGATGAACTT 116
Query 143 GGTTTCACTGATTTGTTCAACCAGCTTCTCCCAACAATGCCTTGGAACTCTCTCATGAAT 202
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 117 GGTTTCACTGAATTGTTCAACCAGCTTCTCCCAACAATGCCTTGGAACTCTCTCATGAAT 176
Query 203 CGGATGATGAAGGAGCTTCATGATCATGGTAAAACCATTGAAGAAATCAAACAAGTCCTT 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 177 CGGATGATGAAGGAGCTTCATGATCATGGTAAAACCATTGAAGAAATCAAACAAGTCCTT 236
Query 263 AGGAGAATCCCAATTCATCCACGTGTCATCCCAGCCATCAAATCTGCTCATGCTTTAGGG 322
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 237 AGGAGAATCCCAATTCATCCACGTGTCATCCCTGCCATCAAATCTGCTCATGCTTTAGGG 296
Query 323 TGCGAGCTGAGAATAGTGAGCGACGCAAACACGTTGTTCATCGAAACAATCATTGAACAT 382
|| |||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 297 TGTGAGCTGAGGATAGTGAGCGACGCAAACACGTTATTCATCGAAACGATCATTGAACAT 356
Query 383 CTCGGGATTGGTGAGTTTTTCTCCGAGATTAACACAAATCCAGGACTTGTAGATGAACAA 442
|| |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 CTTGGGATTAGAGAGTTTTTCTCCGAGATTAACACAAATCCAGGACTTGTAGATGAACAA 416
Query 443 GGAAGATTAATAGTCTCTCCTTACCATGACTTCACCAAATCTTCTCATGGTTGCTCTCGT 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 GGAAGATTAATAGTCTCTCCTTACCATGACTTCACCAAATCTTCTCATGGTTGCTCTCGT 476
Query 503 TGCCCTCCTAACATGTGCAAGGGTTTAATAATCGATAGGATTCAAGCTTCTCTAACGAAA 562
|||||||||||||||||||||||||| |||||||| ||||||||||||||||| || |||
Sbjct 477 TGCCCTCCTAACATGTGCAAGGGTTTGATAATCGAAAGGATTCAAGCTTCTCTGACCAAA 536
Query 563 GAAGGGAAGACGAGCAAGATGATCTATCTTGGAGATGGTGCTGGTGATTACTGTCCCAGT 622
||||||| || || ||| ||||| |||||||||||||||||||||||||||||||| |||
Sbjct 537 GAAGGGAGGAAGACCAATATGATATATCTTGGAGATGGTGCTGGTGATTACTGTCCAAGT 596
Query 623 CTTGGACTCAAAGCTGAAGATTACATGATGCCAAGGAAGAATTTCCCGGTTTGGGATTTG 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 CTTGGACTCAAAGCTGAAGATTACATGATGCCAAGGAAGAATTTCCCGGTTTGGGATTTG 656
Query 683 ATTAGTCAAAATCCCATGTTGGTTAAGGCTACCGTTAGAGATTGGACCGATGGAGAAGAT 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 ATTAGTCAAAATCCCATGTTGGTTAAGGCTACCGTTAGAGATTGGACCGATGGAGAAGAT 716
Query 743 ATGGAGAGGATACTAATGGAAATAATCAACGAA-ATTATGTCATCAGAGGAAGGAGAGGA 801
|||||||||||||||||||||||||||||| || ||||| |||| |||||||| ||| ||
Sbjct 717 ATGGAGAGGATACTAATGGAAATAATCAAC-AAGATTATATCATTAGAGGAAGAAGATGA 775
Query 802 GAATGACAAGATGTTGAGCTCTGAAAACTGCAAGATATCTGTTGGGATTGTTCATGAACC 861
|| |||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 776 CAAGGACAAGATGTTGAGCTCTGATAATTGCAAGATATCTGTTGGGATTGTTCATGAACC 835
Query 862 TAT--T-C------------AAGTTCCTTTAAATTTGGTCAAGTGATTGATGAAAACAAG 906
||| | | ||||||||||||||||||| ||||||||||||||||||||
Sbjct 836 TATGGTGCCTCTTGCTCTTCAAGTTCCTTTAAATTTGGTTAAGTGATTGATGAAAACAAG 895
Query 907 AAATTG 912
||||||
Sbjct 896 AAATTG 901
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40791521190
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5