BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G17720.1 Length=2565 Score E Sequences producing significant alignments: (Bits) Value Ahg471984 jgi|Araly1|471984|fgenesh2_kg.1__1938__AT1G17720.1 3374 0.0 Ahg474285 jgi|Araly1|474285|fgenesh2_kg.1__4239__AT1G51690.1 392 6e-108 Ahg930082 jgi|Araly1|930082|scaffold_302539.1 344 2e-93 > Ahg471984 jgi|Araly1|471984|fgenesh2_kg.1__1938__AT1G17720.1 Length=2440 Score = 3374 bits (1827), Expect = 0.0 Identities = 2313/2523 (92%), Gaps = 132/2523 (5%) Strand=Plus/Plus Query 16 TTTTTCTTCTCTCGTTCCTCCATTTTCTACAGAGAGATATATCAAAAATTCCATTTTCTA 75 |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| Sbjct 1 TTTTTCTTCTCTCGTTCCTCCATTTTCTTCAGAGAGATATATC-AAAATTCCATTTTCTA 59 Query 76 CagagagagagagagagagagagagagagagagGGACGAAATATTAATCATCGATCAAGT 135 | |||||||||||||||| || ||||||| ||||||||||||||| Sbjct 60 C------------AGAGAGAGAGAGAGAG-GA---ACGAAAT-TTAATCATCGATCAA-- 100 Query 136 TGCTTCAATCGCGAAAAAATCCATGAATAAAACTATGGAATGGAATGTGAATCAAAGGAT 195 | | | ||| ||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 101 -G--T---T-GCG-AAAAATCCATGAATAAAACTATGGAATGGAATGTGAATCAATGGAT 152 Query 196 TTGGTTATGGTGATGA-CGCGATCTTCGATTCGATTCGGTGATTAAAAGATTTGGAAGCT 254 ||||| |||||||||| ||||||||||||||||||| ||||||||||||||||||||||| Sbjct 153 TTGGTGATGGTGATGACCGCGATCTTCGATTCGATTTGGTGATTAAAAGATTTGGAAGCT 212 Query 255 CAGATCTCAAGCTCGGATTTCTAATTTTTGTTGGATTATCTAACCCAAAAGCCaaaaaaa 314 ||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||| Sbjct 213 CAGATTTCAAGCTCGGATTTCTAATTTTTGTTGGATTATCTAACCCAAAA-CC--AAAAA 269 Query 315 aaaaaTGAACGGTGGTGACGA----------T--GCCGCTACTAGTGGTCCTCCTCCGTC 362 |||||||||||||||||||| | |||||||||||||||||||||||||| Sbjct 270 GAAAATGAACGGTGGTGACGATGCCTCTTCCTCCGCCGCTACTAGTGGTCCTCCTCCGTC 329 Query 363 TTTAGAGTGGAGATTCTCTCAGGTCTTCGGTGAGCGAACCGCCGGAGAAGAAGTTCAGGA 422 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 330 TTTAGAGTGGAGATTCTCTCAGGTCTTCGGCGAGCGAACCGCCGGAGAAGAAGTTCAGGA 389 Query 423 AGTTGACATCATTTCAGCCATCGAATTTGATAAAAGTGGAGACCATCTCGCAACTGGTGA 482 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 390 AGTTGACATCATTTCAGCCATCGAATTTGATAAAAGTGGAGACCATCTTGCAACTGGTGA 449 Query 483 CCGTGGGGGCCGAGTAGTTCTTTTTGAAAGGACAGATACTAAAGATCATGGAGGGTCCAG 542 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 450 CCGTGGGGGCCGAGTAGTTCTTTTCGAAAGGACAGATACTAAAGATCATGGAGGGTCCAG 509 Query 543 GAAGGATCTTGAGCAGACGGATTACCCAGTTAGGCATCCTGAGTTTCGATATAAAACAGA 602 ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 510 GAAGGATCTTGAGGAGACGGATTACCCAGTTAGGCATCCTGAGTTTAGATATAAAACAGA 569 Query 603 ATTTCAGAGTCATGAACCAGAGTTTGACTATCTCAAGAGTTTGGAGATAGAGGAGAAAAT 662 |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 570 GTTTCAGAGTCATGAGCCAGAGTTTGACTATCTCAAGAGTTTGGAGATAGAGGAGAAAAT 629 Query 663 CAACAAAATCAGATGGTGTCAGCCAGCTAATGGTGCATTGTTTCTGCTTTCTACAAACGA 722 ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| Sbjct 630 CAACAAAATCAGATGGTGTCAGCCAGCAAATGGTGCATTGTTTCTGCTTTCCACAAACGA 689 Query 723 TAAAACCATCAAATATTGGAAGGTACAAGAGAAGAAGATCAAGAAAATTAGTGAAATGAA 782 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 690 TAAAACCATCAAATATTGGAAGGTACAAGAGAAGAAGATCAAGAAAATTAGTGAAATGAA 749 Query 783 TATTGATCCGTC---AG-A--AAGTTCAAATATCCCTCCTCAATTAGTTACTAATGGATT 836 |||||||||||| || | |||||||| |||||||||||||||||||||||||||||| Sbjct 750 TATTGATCCGTCGAGAGAAGGAAGTTCAAGTATCCCTCCTCAATTAGTTACTAATGGATT 809 Query 837 ACCTGCTGATAAAGGGCATGA-CTACCTGAGCAAGGACTTTTCTTTCCCGCCAGGAGGCA 895 |||||| ||||||| ||| | |||||||||||| || | |||||||||||||||||||| Sbjct 810 ACCTGCCGATAAAGCACAT-AGCTACCTGAGCAATGAATATTCTTTCCCGCCAGGAGGCA 868 Query 896 TTCCATCTCTGCGTTTGCCTGTGGTAGTTACCAGCCAGGAGACTAACCTTGTGGCTAGAT 955 |||||||||||||||| ||||| | ||||| ||||||||||| |||||||||||||||| Sbjct 869 TTCCATCTCTGCGTTTACCTGT-G--GTTACAAGCCAGGAGACCAACCTTGTGGCTAGAT 925 Query 956 GCCGAAGAGTGTATGCCCATGCTCATGATTACCATATTAATTCAATCTCCAATAGCAGTG 1015 |||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||| | Sbjct 926 GCCGAAGAGTATATGCTCATGCTCATGATTACCATATTAATTCAATCTCAAATAGCAGCG 985 Query 1016 ACGGAGAAACCTTTATTTCGGCTGATGATCTGCGAGTAAATCTCTGGAATTTGGAAATTA 1075 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 986 ATGGAGAAACCTTTATTTCGGCTGATGATCTGCGAGTAAATCTCTGGAATTTGGAAATTA 1045 Query 1076 GCAACCAGAGTTTCAATATTGTTGATGTTAAGCCCACAAACATGGAGGACTTAACTGAGG 1135 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1046 GCAACCAGAGTTTCAATATTGTTGATGTTAAGCCCACAAACATGGAGGACTTAACTGAGG 1105 Query 1136 TTATTACATCAGCTGAGTTTCATCCTATCCATTGTAATATGCTCGCATATAGTAGTTCAA 1195 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1106 TTATTACATCAGCTGAGTTTCATCCTATCCATTGTAATATGCTCGCATATAGTAGTTCAA 1165 Query 1196 AAGGCTCCATTCGTTTGATTGATATGCGTCAATCAGCTCTGTGTGATTCTCATACGAAAT 1255 ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1166 AAGGCTCAATTCGTTTGATTGATATGCGTCAATCAGCTCTGTGTGATTCTCATACAAAAT 1225 Query 1256 TATTTGAAGAACCGGAAGCACCTGGTTCAAGATCATTTTTCACAGAGATAATTGCCTCAA 1315 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1226 TATTTGAAGAACCGGAAGCACCTGGTTCAAGATCATTTTTCACAGAGATAATTGCCTCAA 1285 Query 1316 TTTCAGATATTAAATTCTCAAAGGATGGGAGATACATACTTAGTCGCGATTACATGACGC 1375 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1286 TTTCAGATATTAAATTCTCAAAGGATGGGAGATACATACTTAGTCGCGATTACATGACGC 1345 Query 1376 TCAAGCTGTGGGACATAAACATGGATTCTGGTCCGGTCGCATCTTACCAGGTTCATGAAC 1435 |||||||||||||||||||||||||||||||||| || |||||||||||||||||||| | Sbjct 1346 TCAAGCTGTGGGACATAAACATGGATTCTGGTCCAGTTGCATCTTACCAGGTTCATGAGC 1405 Query 1436 ATCTGAGACCCAGGCTATGCGATCTATATGAAAATGACTCCATCTTTGATAAATTTGAGT 1495 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1406 ATCTGAGACCCAGGCTATGCGATCTATATGAAAATGACTCCATCTTTGATAAATTTGAGT 1465 Query 1496 GTTGTCTGAGTGGCGATGGATTGAGGGTAGCAACAGGTTCTTACAGCAATCTATTCCGCG 1555 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1466 GTTGTCTGAGTGGCGATGGATTGAGGGTAGCAACAGGTTCTTACAGCAATCTATTCCGCG 1525 Query 1556 TATTTGGAGCGTCTCAAGGAAGTACTGAAGCTGCGACTTTGGAAGCTAGCAAAAACCCGA 1615 ||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||| Sbjct 1526 TATTTGGAGCGTCTCAAGGTAGTACCGAAGCTGCAACTTTGGAAGCTAGCAAAAACCCGA 1585 Query 1616 TGAGGAGGCAAATCCAGACACCTGCAAGACCATCCAGATCTATAGGCAGTATGACACGCG 1675 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | Sbjct 1586 TGAGGAGGCAAATCCAGACACCTGCAAGACCTTCCAGATCTATAGGCAGTATGACACGTG 1645 Query 1676 TGGTTAGACGAGGATCAGAGAGTCCCGGAACAGAGGCAAATGGGAACGCCTACGATTTCA 1735 ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| Sbjct 1646 TGGTTAGACGAGGATCAGAGAGTCCCGGAACAGAGGCAAATGGGAACGCATATGATTTCA 1705 Query 1736 CAACAAAGTTGCTGCATATGGCTTGGCACCCAACAGAGAACTCAATTGCTTGTGCAGCAG 1795 |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1706 CAACTAAGTTGCTGCATATGGCATGGCACCCAACAGAGAACTCAATTGCTTGTGCAGCAG 1765 Query 1796 CAAACAGCTTGTACATGTACTATGCATGAGTTGG-GA-AGAGAGAGAGA-A-GACATAA- 1850 ||||||||||||||||||||||||||||| |||| || ||||||||||| | |||| || Sbjct 1766 CAAACAGCTTGTACATGTACTATGCATGAATTGGAGAGAGAGAGAGAGAGAAGACA-AAC 1824 Query 1851 ACATGGAATCAGCTTGCTCCAATTTAActttccctttcttcttttcccgggtctctctct 1910 |||||||| |||||||||||||||||||||| || || || | ||||||||| Sbjct 1825 ACATGGAACCAGCTTGCTCCAATTTAACTTTTCCAGGCT-CT---C-----TCTCTCTCT 1875 Query 1911 cactctctttctctctttcttttAACAACCAAAGTCATGATGTAACCAGAAAAGGTGTAG 1970 || ||||||||| | ||| ||||||||||||||||||||||||||||||||||||| Sbjct 1876 CATTCTCTTTCT-T-TTT-----AACAACCAAAGTCATGATGTAACCAGAAAAGGTGTAG 1928 Query 1971 TAGTAACAGAGTAATGCTGTGACCAAGACCAAAGCCTGACCAGTCA--CCGCGACGAGTC 2028 |||||||| || |||||||| |||||||||||| ||||||||||| |||||||||||| Sbjct 1929 TAGTAACATTGTTATGCTGTGTCCAAGACCAAAGGCTGACCAGTCATACCGCGACGAGTC 1988 Query 2029 AACGGAAGAAGCAGCAACAGTAATCTTTCAGGAGTTAGTAAGGTAAAAA-GTGTTGGGTT 2087 ||| ||||||||| | ||||||||||||||||||||| |||||||||| || ||||||| Sbjct 1989 AACAGAAGAAGCA--A-CAGTAATCTTTCAGGAGTTAG-AAGGTAAAAAAGTATTGGGTT 2044 Query 2088 GGGAAAGAAAACAAGAAGA-GGCCTTTTGTTTACCTGAAGAAGGGTAATGTCTTAAATAT 2146 |||||| | || ||||| || || | ||| | | || |||||| Sbjct 2045 GGGAAATTTACCA-GAAGAAGGG-TTGTCTTTT--T---------T--TG----AAATAT 2085 Query 2147 CCGAACCACCCCTCCTACTTAGGTTGTCttttttttGGGTTGCTGCACTAAGGATAAatt 2206 ||||||||||||||||||||||||||||||||||| ||||||| || ||||||| ||| Sbjct 2086 CCGAACCACCCCTCCTACTTAGGTTGTCTTTTTTT-GGGTTGC---AC-AAGGATACATT 2140 Query 2207 ttattttatttt-tt-t-agtatcgattctattaccttt-tttt-tttCAATTAAGAAAC 2261 |||||||||||| || | ||| ||||||||||||| ||| |||| |||| ||||||||| Sbjct 2141 TTATTTTATTTTCTTATTAGTTTCGATTCTATTAC-TTTCTTTTCTTTC--TTAAGAAAC 2197 Query 2262 AAATTATGGTGTGTGGGATTTTTT-AGTATGAGACGATTGGGAGGGATGTGCTTCAAAAT 2320 | ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| Sbjct 2198 AGATTATGGTGTGTGCGATTTTTTTAGTATGAGACGATTGGGAGGGATGTGCTTCAAAAT 2257 Query 2321 TTGTTTATTGATTCTTTTGTCATATCTTCTTCTTCTTCTT------GAACACCACATCCA 2374 |||||||||||||||||||||||||||||||||||||||| ||||||||||| || Sbjct 2258 TTGTTTATTGATTCTTTTGTCATATCTTCTTCTTCTTCTTCTTCTTGAACACCACATACA 2317 Query 2375 TTC-TGt---tttttt---gctatttgtctatttttcaattgtattttcagacacctctt 2427 | | ||| |||||| ||||||||||||||||||||||||||| ||||||||||||| Sbjct 2318 TACGTGTGGCTTTTTTTTTGCTATTTGTCTATTTTTCAATTGTATTGTCAGACACCTCTT 2377 Query 2428 ttgtgtttt-ttacttttACCCACAATAAAAAGTAGCTTTCTCCTCCATTCCTCGTAGAT 2486 |||||||| |||||||||||||||||||||||||| ||||||||| ||||||| | ||| Sbjct 2378 CTGTGTTTTCTTACTTTTACCCACAATAAAAAGTAGTTTTCTCCTCAATTCCTCATGGAT 2437 Query 2487 TCT 2489 ||| Sbjct 2438 TCT 2440 > Ahg474285 jgi|Araly1|474285|fgenesh2_kg.1__4239__AT1G51690.1 Length=3341 Score = 392 bits (212), Expect = 6e-108 Identities = 371/446 (83%), Gaps = 17/446 (4%) Strand=Plus/Plus Query 362 CTTTAGAGTGGAGATTCTCTCAGGTCTTCGGTGAGCGAACCGCCGGAGAAGAAGTTCAGG 421 |||| || |||||||||||||||||||||||||| |||| ||| || ||||||||||| | Sbjct 1407 CTTTGGAATGGAGATTCTCTCAGGTCTTCGGTGAACGAAGCGCTGGTGAAGAAGTTCAAG 1466 Query 422 AAGTTGACATCATTTCAGCCATCGAATTTGATAAAAGTGGAGACCATCTCGCAACTGGTG 481 ||||||| || |||||||| |||||||||||||| |||| ||||||| || ||||| | Sbjct 1467 AAGTTGATATAATTTCAGCGATCGAATTTGATAATTCTGGAAACCATCTTGCTACTGGGG 1526 Query 482 ACCGTGGGGGCCGAGTAGTTCTTTTTGAAAGGA-CAGATACTAA-AGATCATGGAG-GG- 537 ||||||| || || || |||||||| || |||| || |||| || | || | | || || Sbjct 1527 ACCGTGGAGGACGTGTTGTTCTTTTCGAGAGGACCA-ATACCAATA-AT-A-GCAGTGGA 1582 Query 538 TCCAGGAAG-GATCTTG-AGCAGACGGATTACCCAGTTAGGCATCCTGAGTTTCGATATA 595 ||||| || || |||| || || | ||||| ||| | |||||||| |||||||| |||| Sbjct 1583 ACCAGG-AGAGAGCTTGAAGAAG-CTGATTATCCACTGAGGCATCCAGAGTTTCGTTATA 1640 Query 596 AAACAGAATTTCAGAGTCATGAACCAGAGTTTGACTATCTCAAGAGTTTGGAGATAGAGG 655 ||||||| |||||||||||||| || |||||||| || |||||||||||||||||||||| Sbjct 1641 AAACAGAGTTTCAGAGTCATGACCCTGAGTTTGATTACCTCAAGAGTTTGGAGATAGAGG 1700 Query 656 AGAAAATCAACAAAATCAGATGGTGTCAGCCAGCTAATGGTGCA-TTGTTTCTGCTTTCT 714 ||||||| |||||||| ||||||||||| |||| |||||||| || ||||| || || Sbjct 1701 AGAAAATTAACAAAATTAGATGGTGTCAAACAGCAAATGGTGCTCTT-TTTCTCCTATCG 1759 Query 715 ACAAACGATAAAACCATCAAATATTGGAAGGTACAAGAGAAGAAGATCAAGAAAATTAGT 774 || || |||||||||||||| | ||||||||| ||||| |||||||||||||||||| || Sbjct 1760 ACGAATGATAAAACCATCAAGTTTTGGAAGGTTCAAGACAAGAAGATCAAGAAAATTTGT 1819 Query 775 GAAATGAATATT-GATCCGTCA-GAA 798 || |||||| | ||||| ||| ||| Sbjct 1820 GATATGAAT-TCAGATCCTTCAAGAA 1844 > Ahg930082 jgi|Araly1|930082|scaffold_302539.1 Length=1585 Score = 344 bits (186), Expect = 2e-93 Identities = 385/479 (80%), Gaps = 21/479 (4%) Strand=Plus/Plus Query 318 aaTGAACGGTGGTGACGATGCCGCTA-C-TAGTG-GTC-CTCCTCCGTCT-TTAGAGTGG 372 ||||||||||||||| || |||| | | | | | | | ||||| | || || || ||| Sbjct 20 AATGAACGGTGGTGATGAGGCCG-GAGCTTCGGGAGACTTTCCTCAGCCTCTT-GATTGG 77 Query 373 AGATTCTCTCAGGTCTTCGGTGAGCGAACCGCCGGAGAAGAAGTTCAGGAAGTTGACATC 432 |||||||||||||| || ||||| || | ||| || ||||||||||| |||||||| || Sbjct 78 AGATTCTCTCAGGTTTTTGGTGAACGCAGCGCTGGTGAAGAAGTTCAAGAAGTTGATATA 137 Query 433 ATTTCAGCCATCGAATTTGATAAAAGTGGAGACCATCTCGCAACTGGTGACCGTGGGGGC 492 ||||| || || || ||||||||| ||| |||||||| || ||||| |||||||| || Sbjct 138 ATTTCTGCGATTGAGTTTGATAAATCTGGTGACCATCTTGCTACTGGGGACCGTGGTGGA 197 Query 493 CGAGTAGTTCTTTTTGAAAGGACAGATACTAAAGAT--CA-TGGAGGGTCCAGGAAG-GA 548 || || |||||||| || || |||||| | ||| || || |||| | | ||| || || Sbjct 198 CGTGTTGTTCTTTTCGAGAGAACAGATTCCAAAAATACCAGTGGA--G-CAAGG-AGAGA 253 Query 549 TCTTG-AGCAGACGGATTACCCAGTTAGGCATCCTGAGTTTCGATATAAAACAGAATTTC 607 ||||| || | || || || || | ||||| || || ||||| |||||||| ||||||| Sbjct 254 TCTTGAAGGA-ACAGACTATCCTCTGAGGCACCCAGAATTTCGTTATAAAACTGAATTTC 312 Query 608 AGAGTCATGAACCAGAGTTTGACTATCTCAAGAGTTTGGAGATAGAGGAGAAAATCAACA 667 | |||||||||||||||||||| || |||||||||||||||||||||||||||||||| | Sbjct 313 AAAGTCATGAACCAGAGTTTGATTACCTCAAGAGTTTGGAGATAGAGGAGAAAATCAATA 372 Query 668 AAATCAGATGGTGTCAGCCAGCTAATGGTGCA-TTGTTTCTGCTTTCTACAAACGATAAA 726 |||| ||||||| ||| |||| |||||||| || ||||| ||||| ||||| |||||| Sbjct 373 AAATTAGATGGTCTCAAACAGCAAATGGTGCTCTT-TTTCTCCTTTCGACAAATGATAAA 431 Query 727 ACCATCAAATATTGGAAGGTACAAGAGAAGAAGATCAAGAAAAT-TAGTGAAATGAATA 784 |||||||| | ||||||||| ||||| || |||||||||||||| | |||| || |||| Sbjct 432 ACCATCAAGTTTTGGAAGGTTCAAGATAAAAAGATCAAGAAAATCT-GTGATATAAATA 489 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 96711132055 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5