BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G17720.1
Length=2565
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471984 jgi|Araly1|471984|fgenesh2_kg.1__1938__AT1G17720.1 3374 0.0
Ahg474285 jgi|Araly1|474285|fgenesh2_kg.1__4239__AT1G51690.1 392 6e-108
Ahg930082 jgi|Araly1|930082|scaffold_302539.1 344 2e-93
> Ahg471984 jgi|Araly1|471984|fgenesh2_kg.1__1938__AT1G17720.1
Length=2440
Score = 3374 bits (1827), Expect = 0.0
Identities = 2313/2523 (92%), Gaps = 132/2523 (5%)
Strand=Plus/Plus
Query 16 TTTTTCTTCTCTCGTTCCTCCATTTTCTACAGAGAGATATATCAAAAATTCCATTTTCTA 75
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 1 TTTTTCTTCTCTCGTTCCTCCATTTTCTTCAGAGAGATATATC-AAAATTCCATTTTCTA 59
Query 76 CagagagagagagagagagagagagagagagagGGACGAAATATTAATCATCGATCAAGT 135
| |||||||||||||||| || ||||||| |||||||||||||||
Sbjct 60 C------------AGAGAGAGAGAGAGAG-GA---ACGAAAT-TTAATCATCGATCAA-- 100
Query 136 TGCTTCAATCGCGAAAAAATCCATGAATAAAACTATGGAATGGAATGTGAATCAAAGGAT 195
| | | ||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 101 -G--T---T-GCG-AAAAATCCATGAATAAAACTATGGAATGGAATGTGAATCAATGGAT 152
Query 196 TTGGTTATGGTGATGA-CGCGATCTTCGATTCGATTCGGTGATTAAAAGATTTGGAAGCT 254
||||| |||||||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct 153 TTGGTGATGGTGATGACCGCGATCTTCGATTCGATTTGGTGATTAAAAGATTTGGAAGCT 212
Query 255 CAGATCTCAAGCTCGGATTTCTAATTTTTGTTGGATTATCTAACCCAAAAGCCaaaaaaa 314
||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 213 CAGATTTCAAGCTCGGATTTCTAATTTTTGTTGGATTATCTAACCCAAAA-CC--AAAAA 269
Query 315 aaaaaTGAACGGTGGTGACGA----------T--GCCGCTACTAGTGGTCCTCCTCCGTC 362
|||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 270 GAAAATGAACGGTGGTGACGATGCCTCTTCCTCCGCCGCTACTAGTGGTCCTCCTCCGTC 329
Query 363 TTTAGAGTGGAGATTCTCTCAGGTCTTCGGTGAGCGAACCGCCGGAGAAGAAGTTCAGGA 422
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 330 TTTAGAGTGGAGATTCTCTCAGGTCTTCGGCGAGCGAACCGCCGGAGAAGAAGTTCAGGA 389
Query 423 AGTTGACATCATTTCAGCCATCGAATTTGATAAAAGTGGAGACCATCTCGCAACTGGTGA 482
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 390 AGTTGACATCATTTCAGCCATCGAATTTGATAAAAGTGGAGACCATCTTGCAACTGGTGA 449
Query 483 CCGTGGGGGCCGAGTAGTTCTTTTTGAAAGGACAGATACTAAAGATCATGGAGGGTCCAG 542
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 450 CCGTGGGGGCCGAGTAGTTCTTTTCGAAAGGACAGATACTAAAGATCATGGAGGGTCCAG 509
Query 543 GAAGGATCTTGAGCAGACGGATTACCCAGTTAGGCATCCTGAGTTTCGATATAAAACAGA 602
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 510 GAAGGATCTTGAGGAGACGGATTACCCAGTTAGGCATCCTGAGTTTAGATATAAAACAGA 569
Query 603 ATTTCAGAGTCATGAACCAGAGTTTGACTATCTCAAGAGTTTGGAGATAGAGGAGAAAAT 662
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 570 GTTTCAGAGTCATGAGCCAGAGTTTGACTATCTCAAGAGTTTGGAGATAGAGGAGAAAAT 629
Query 663 CAACAAAATCAGATGGTGTCAGCCAGCTAATGGTGCATTGTTTCTGCTTTCTACAAACGA 722
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 630 CAACAAAATCAGATGGTGTCAGCCAGCAAATGGTGCATTGTTTCTGCTTTCCACAAACGA 689
Query 723 TAAAACCATCAAATATTGGAAGGTACAAGAGAAGAAGATCAAGAAAATTAGTGAAATGAA 782
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 690 TAAAACCATCAAATATTGGAAGGTACAAGAGAAGAAGATCAAGAAAATTAGTGAAATGAA 749
Query 783 TATTGATCCGTC---AG-A--AAGTTCAAATATCCCTCCTCAATTAGTTACTAATGGATT 836
|||||||||||| || | |||||||| ||||||||||||||||||||||||||||||
Sbjct 750 TATTGATCCGTCGAGAGAAGGAAGTTCAAGTATCCCTCCTCAATTAGTTACTAATGGATT 809
Query 837 ACCTGCTGATAAAGGGCATGA-CTACCTGAGCAAGGACTTTTCTTTCCCGCCAGGAGGCA 895
|||||| ||||||| ||| | |||||||||||| || | ||||||||||||||||||||
Sbjct 810 ACCTGCCGATAAAGCACAT-AGCTACCTGAGCAATGAATATTCTTTCCCGCCAGGAGGCA 868
Query 896 TTCCATCTCTGCGTTTGCCTGTGGTAGTTACCAGCCAGGAGACTAACCTTGTGGCTAGAT 955
|||||||||||||||| ||||| | ||||| ||||||||||| ||||||||||||||||
Sbjct 869 TTCCATCTCTGCGTTTACCTGT-G--GTTACAAGCCAGGAGACCAACCTTGTGGCTAGAT 925
Query 956 GCCGAAGAGTGTATGCCCATGCTCATGATTACCATATTAATTCAATCTCCAATAGCAGTG 1015
|||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||| |
Sbjct 926 GCCGAAGAGTATATGCTCATGCTCATGATTACCATATTAATTCAATCTCAAATAGCAGCG 985
Query 1016 ACGGAGAAACCTTTATTTCGGCTGATGATCTGCGAGTAAATCTCTGGAATTTGGAAATTA 1075
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 986 ATGGAGAAACCTTTATTTCGGCTGATGATCTGCGAGTAAATCTCTGGAATTTGGAAATTA 1045
Query 1076 GCAACCAGAGTTTCAATATTGTTGATGTTAAGCCCACAAACATGGAGGACTTAACTGAGG 1135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1046 GCAACCAGAGTTTCAATATTGTTGATGTTAAGCCCACAAACATGGAGGACTTAACTGAGG 1105
Query 1136 TTATTACATCAGCTGAGTTTCATCCTATCCATTGTAATATGCTCGCATATAGTAGTTCAA 1195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1106 TTATTACATCAGCTGAGTTTCATCCTATCCATTGTAATATGCTCGCATATAGTAGTTCAA 1165
Query 1196 AAGGCTCCATTCGTTTGATTGATATGCGTCAATCAGCTCTGTGTGATTCTCATACGAAAT 1255
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1166 AAGGCTCAATTCGTTTGATTGATATGCGTCAATCAGCTCTGTGTGATTCTCATACAAAAT 1225
Query 1256 TATTTGAAGAACCGGAAGCACCTGGTTCAAGATCATTTTTCACAGAGATAATTGCCTCAA 1315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1226 TATTTGAAGAACCGGAAGCACCTGGTTCAAGATCATTTTTCACAGAGATAATTGCCTCAA 1285
Query 1316 TTTCAGATATTAAATTCTCAAAGGATGGGAGATACATACTTAGTCGCGATTACATGACGC 1375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1286 TTTCAGATATTAAATTCTCAAAGGATGGGAGATACATACTTAGTCGCGATTACATGACGC 1345
Query 1376 TCAAGCTGTGGGACATAAACATGGATTCTGGTCCGGTCGCATCTTACCAGGTTCATGAAC 1435
|||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |
Sbjct 1346 TCAAGCTGTGGGACATAAACATGGATTCTGGTCCAGTTGCATCTTACCAGGTTCATGAGC 1405
Query 1436 ATCTGAGACCCAGGCTATGCGATCTATATGAAAATGACTCCATCTTTGATAAATTTGAGT 1495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1406 ATCTGAGACCCAGGCTATGCGATCTATATGAAAATGACTCCATCTTTGATAAATTTGAGT 1465
Query 1496 GTTGTCTGAGTGGCGATGGATTGAGGGTAGCAACAGGTTCTTACAGCAATCTATTCCGCG 1555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1466 GTTGTCTGAGTGGCGATGGATTGAGGGTAGCAACAGGTTCTTACAGCAATCTATTCCGCG 1525
Query 1556 TATTTGGAGCGTCTCAAGGAAGTACTGAAGCTGCGACTTTGGAAGCTAGCAAAAACCCGA 1615
||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||
Sbjct 1526 TATTTGGAGCGTCTCAAGGTAGTACCGAAGCTGCAACTTTGGAAGCTAGCAAAAACCCGA 1585
Query 1616 TGAGGAGGCAAATCCAGACACCTGCAAGACCATCCAGATCTATAGGCAGTATGACACGCG 1675
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 1586 TGAGGAGGCAAATCCAGACACCTGCAAGACCTTCCAGATCTATAGGCAGTATGACACGTG 1645
Query 1676 TGGTTAGACGAGGATCAGAGAGTCCCGGAACAGAGGCAAATGGGAACGCCTACGATTTCA 1735
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 1646 TGGTTAGACGAGGATCAGAGAGTCCCGGAACAGAGGCAAATGGGAACGCATATGATTTCA 1705
Query 1736 CAACAAAGTTGCTGCATATGGCTTGGCACCCAACAGAGAACTCAATTGCTTGTGCAGCAG 1795
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1706 CAACTAAGTTGCTGCATATGGCATGGCACCCAACAGAGAACTCAATTGCTTGTGCAGCAG 1765
Query 1796 CAAACAGCTTGTACATGTACTATGCATGAGTTGG-GA-AGAGAGAGAGA-A-GACATAA- 1850
||||||||||||||||||||||||||||| |||| || ||||||||||| | |||| ||
Sbjct 1766 CAAACAGCTTGTACATGTACTATGCATGAATTGGAGAGAGAGAGAGAGAGAAGACA-AAC 1824
Query 1851 ACATGGAATCAGCTTGCTCCAATTTAActttccctttcttcttttcccgggtctctctct 1910
|||||||| |||||||||||||||||||||| || || || | |||||||||
Sbjct 1825 ACATGGAACCAGCTTGCTCCAATTTAACTTTTCCAGGCT-CT---C-----TCTCTCTCT 1875
Query 1911 cactctctttctctctttcttttAACAACCAAAGTCATGATGTAACCAGAAAAGGTGTAG 1970
|| ||||||||| | ||| |||||||||||||||||||||||||||||||||||||
Sbjct 1876 CATTCTCTTTCT-T-TTT-----AACAACCAAAGTCATGATGTAACCAGAAAAGGTGTAG 1928
Query 1971 TAGTAACAGAGTAATGCTGTGACCAAGACCAAAGCCTGACCAGTCA--CCGCGACGAGTC 2028
|||||||| || |||||||| |||||||||||| ||||||||||| ||||||||||||
Sbjct 1929 TAGTAACATTGTTATGCTGTGTCCAAGACCAAAGGCTGACCAGTCATACCGCGACGAGTC 1988
Query 2029 AACGGAAGAAGCAGCAACAGTAATCTTTCAGGAGTTAGTAAGGTAAAAA-GTGTTGGGTT 2087
||| ||||||||| | ||||||||||||||||||||| |||||||||| || |||||||
Sbjct 1989 AACAGAAGAAGCA--A-CAGTAATCTTTCAGGAGTTAG-AAGGTAAAAAAGTATTGGGTT 2044
Query 2088 GGGAAAGAAAACAAGAAGA-GGCCTTTTGTTTACCTGAAGAAGGGTAATGTCTTAAATAT 2146
|||||| | || ||||| || || | ||| | | || ||||||
Sbjct 2045 GGGAAATTTACCA-GAAGAAGGG-TTGTCTTTT--T---------T--TG----AAATAT 2085
Query 2147 CCGAACCACCCCTCCTACTTAGGTTGTCttttttttGGGTTGCTGCACTAAGGATAAatt 2206
||||||||||||||||||||||||||||||||||| ||||||| || ||||||| |||
Sbjct 2086 CCGAACCACCCCTCCTACTTAGGTTGTCTTTTTTT-GGGTTGC---AC-AAGGATACATT 2140
Query 2207 ttattttatttt-tt-t-agtatcgattctattaccttt-tttt-tttCAATTAAGAAAC 2261
|||||||||||| || | ||| ||||||||||||| ||| |||| |||| |||||||||
Sbjct 2141 TTATTTTATTTTCTTATTAGTTTCGATTCTATTAC-TTTCTTTTCTTTC--TTAAGAAAC 2197
Query 2262 AAATTATGGTGTGTGGGATTTTTT-AGTATGAGACGATTGGGAGGGATGTGCTTCAAAAT 2320
| ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2198 AGATTATGGTGTGTGCGATTTTTTTAGTATGAGACGATTGGGAGGGATGTGCTTCAAAAT 2257
Query 2321 TTGTTTATTGATTCTTTTGTCATATCTTCTTCTTCTTCTT------GAACACCACATCCA 2374
|||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 2258 TTGTTTATTGATTCTTTTGTCATATCTTCTTCTTCTTCTTCTTCTTGAACACCACATACA 2317
Query 2375 TTC-TGt---tttttt---gctatttgtctatttttcaattgtattttcagacacctctt 2427
| | ||| |||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct 2318 TACGTGTGGCTTTTTTTTTGCTATTTGTCTATTTTTCAATTGTATTGTCAGACACCTCTT 2377
Query 2428 ttgtgtttt-ttacttttACCCACAATAAAAAGTAGCTTTCTCCTCCATTCCTCGTAGAT 2486
|||||||| |||||||||||||||||||||||||| ||||||||| ||||||| | |||
Sbjct 2378 CTGTGTTTTCTTACTTTTACCCACAATAAAAAGTAGTTTTCTCCTCAATTCCTCATGGAT 2437
Query 2487 TCT 2489
|||
Sbjct 2438 TCT 2440
> Ahg474285 jgi|Araly1|474285|fgenesh2_kg.1__4239__AT1G51690.1
Length=3341
Score = 392 bits (212), Expect = 6e-108
Identities = 371/446 (83%), Gaps = 17/446 (4%)
Strand=Plus/Plus
Query 362 CTTTAGAGTGGAGATTCTCTCAGGTCTTCGGTGAGCGAACCGCCGGAGAAGAAGTTCAGG 421
|||| || |||||||||||||||||||||||||| |||| ||| || ||||||||||| |
Sbjct 1407 CTTTGGAATGGAGATTCTCTCAGGTCTTCGGTGAACGAAGCGCTGGTGAAGAAGTTCAAG 1466
Query 422 AAGTTGACATCATTTCAGCCATCGAATTTGATAAAAGTGGAGACCATCTCGCAACTGGTG 481
||||||| || |||||||| |||||||||||||| |||| ||||||| || ||||| |
Sbjct 1467 AAGTTGATATAATTTCAGCGATCGAATTTGATAATTCTGGAAACCATCTTGCTACTGGGG 1526
Query 482 ACCGTGGGGGCCGAGTAGTTCTTTTTGAAAGGA-CAGATACTAA-AGATCATGGAG-GG- 537
||||||| || || || |||||||| || |||| || |||| || | || | | || ||
Sbjct 1527 ACCGTGGAGGACGTGTTGTTCTTTTCGAGAGGACCA-ATACCAATA-AT-A-GCAGTGGA 1582
Query 538 TCCAGGAAG-GATCTTG-AGCAGACGGATTACCCAGTTAGGCATCCTGAGTTTCGATATA 595
||||| || || |||| || || | ||||| ||| | |||||||| |||||||| ||||
Sbjct 1583 ACCAGG-AGAGAGCTTGAAGAAG-CTGATTATCCACTGAGGCATCCAGAGTTTCGTTATA 1640
Query 596 AAACAGAATTTCAGAGTCATGAACCAGAGTTTGACTATCTCAAGAGTTTGGAGATAGAGG 655
||||||| |||||||||||||| || |||||||| || ||||||||||||||||||||||
Sbjct 1641 AAACAGAGTTTCAGAGTCATGACCCTGAGTTTGATTACCTCAAGAGTTTGGAGATAGAGG 1700
Query 656 AGAAAATCAACAAAATCAGATGGTGTCAGCCAGCTAATGGTGCA-TTGTTTCTGCTTTCT 714
||||||| |||||||| ||||||||||| |||| |||||||| || ||||| || ||
Sbjct 1701 AGAAAATTAACAAAATTAGATGGTGTCAAACAGCAAATGGTGCTCTT-TTTCTCCTATCG 1759
Query 715 ACAAACGATAAAACCATCAAATATTGGAAGGTACAAGAGAAGAAGATCAAGAAAATTAGT 774
|| || |||||||||||||| | ||||||||| ||||| |||||||||||||||||| ||
Sbjct 1760 ACGAATGATAAAACCATCAAGTTTTGGAAGGTTCAAGACAAGAAGATCAAGAAAATTTGT 1819
Query 775 GAAATGAATATT-GATCCGTCA-GAA 798
|| |||||| | ||||| ||| |||
Sbjct 1820 GATATGAAT-TCAGATCCTTCAAGAA 1844
> Ahg930082 jgi|Araly1|930082|scaffold_302539.1
Length=1585
Score = 344 bits (186), Expect = 2e-93
Identities = 385/479 (80%), Gaps = 21/479 (4%)
Strand=Plus/Plus
Query 318 aaTGAACGGTGGTGACGATGCCGCTA-C-TAGTG-GTC-CTCCTCCGTCT-TTAGAGTGG 372
||||||||||||||| || |||| | | | | | | | ||||| | || || || |||
Sbjct 20 AATGAACGGTGGTGATGAGGCCG-GAGCTTCGGGAGACTTTCCTCAGCCTCTT-GATTGG 77
Query 373 AGATTCTCTCAGGTCTTCGGTGAGCGAACCGCCGGAGAAGAAGTTCAGGAAGTTGACATC 432
|||||||||||||| || ||||| || | ||| || ||||||||||| |||||||| ||
Sbjct 78 AGATTCTCTCAGGTTTTTGGTGAACGCAGCGCTGGTGAAGAAGTTCAAGAAGTTGATATA 137
Query 433 ATTTCAGCCATCGAATTTGATAAAAGTGGAGACCATCTCGCAACTGGTGACCGTGGGGGC 492
||||| || || || ||||||||| ||| |||||||| || ||||| |||||||| ||
Sbjct 138 ATTTCTGCGATTGAGTTTGATAAATCTGGTGACCATCTTGCTACTGGGGACCGTGGTGGA 197
Query 493 CGAGTAGTTCTTTTTGAAAGGACAGATACTAAAGAT--CA-TGGAGGGTCCAGGAAG-GA 548
|| || |||||||| || || |||||| | ||| || || |||| | | ||| || ||
Sbjct 198 CGTGTTGTTCTTTTCGAGAGAACAGATTCCAAAAATACCAGTGGA--G-CAAGG-AGAGA 253
Query 549 TCTTG-AGCAGACGGATTACCCAGTTAGGCATCCTGAGTTTCGATATAAAACAGAATTTC 607
||||| || | || || || || | ||||| || || ||||| |||||||| |||||||
Sbjct 254 TCTTGAAGGA-ACAGACTATCCTCTGAGGCACCCAGAATTTCGTTATAAAACTGAATTTC 312
Query 608 AGAGTCATGAACCAGAGTTTGACTATCTCAAGAGTTTGGAGATAGAGGAGAAAATCAACA 667
| |||||||||||||||||||| || |||||||||||||||||||||||||||||||| |
Sbjct 313 AAAGTCATGAACCAGAGTTTGATTACCTCAAGAGTTTGGAGATAGAGGAGAAAATCAATA 372
Query 668 AAATCAGATGGTGTCAGCCAGCTAATGGTGCA-TTGTTTCTGCTTTCTACAAACGATAAA 726
|||| ||||||| ||| |||| |||||||| || ||||| ||||| ||||| ||||||
Sbjct 373 AAATTAGATGGTCTCAAACAGCAAATGGTGCTCTT-TTTCTCCTTTCGACAAATGATAAA 431
Query 727 ACCATCAAATATTGGAAGGTACAAGAGAAGAAGATCAAGAAAAT-TAGTGAAATGAATA 784
|||||||| | ||||||||| ||||| || |||||||||||||| | |||| || ||||
Sbjct 432 ACCATCAAGTTTTGGAAGGTTCAAGATAAAAAGATCAAGAAAATCT-GTGATATAAATA 489
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96711132055
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5