BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G17730.1
Length=895
Score E
Sequences producing significant alignments: (Bits) Value
Ahg920696 jgi|Araly1|920696|scaffold_101977.1 1014 0.0
Ahg476433 jgi|Araly1|476433|fgenesh2_kg.2__1563__AT1G73030.1 649 0.0
> Ahg920696 jgi|Araly1|920696|scaffold_101977.1
Length=653
Score = 1014 bits (549), Expect = 0.0
Identities = 622/656 (95%), Gaps = 9/656 (1%)
Strand=Plus/Plus
Query 102 CCGATT--AACTGATCGAGGAGATGGGTAATACAGATAAGCTGATGAACCAGATCTTTGA 159
|||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 3 CCGATTAGAACTGATC---GAGATGGGTAATACAGATAAGCTGATGAACCAAATCTTTGA 59
Query 160 ATTGAAATTTACGTCAAAGTCTCTGCAGAGGCAAGCTAGGAAGTGCGAAAAAGAGGAG-A 218
|||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 60 TTTGAAATTCACGTCAAAGTCTCTGCAGAGGCAAGCTAGGAAGTGCGAAAGAGAGGAGAA 119
Query 219 GATCGGAGAAGCTCAAGGTAAAGAAAGCCATTGAGAAAGGTAACATGGATGGTGCTCGGA 278
| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 120 G-TCGGAGAAGCTCAAGGTCAAGAAAGCCATTGAGAAAGGGAACATGGATGGTGCTCGGA 178
Query 279 TCTATGCCGAGAACGCCATTCGCAAACGCAGCGAGCAGATGAACTACCTTCGTCTCTCTT 338
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 179 TCTATGCCGAGAACGCCATTCGCAAACGCAGTGAGCAGATGAACTACCTTCGTCTCTCTT 238
Query 339 CTCGATTGGACGCTGTTGTTGCTCGACTCGATACCCAGGCTAAGATGGCTACCATCACCA 398
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 239 CTCGATTGGACGCTGTTGTAGCTCGGCTCGATACCCAGGCTAAGATGGCTACCATCACCA 298
Query 399 AATCGATGACCAACATTGTCAAATCCCTCGAATCGTCTCTTACCACTGGCAACTTACAGA 458
|||||||||| ||||| |||||||||||||||||| ||||| ||||||| ||||||||||
Sbjct 299 AATCGATGACTAACATCGTCAAATCCCTCGAATCGACTCTTGCCACTGGTAACTTACAGA 358
Query 459 AGATGTCTGAGACGATGGATTCGTTTGAGAAACAGTTTGTGAACATGGAAGTCCAAGCTG 518
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 AGATGTCAGAGACTATGGATTCGTTTGAGAAACAGTTTGTGAACATGGAAGTCCAAGCTG 418
Query 519 AGTTCATGGATAATGCAATGGCTGGCT-CTACTTCATTGTCGACTCCAGAAGGAGAAGTC 577
|||||||||| |||||||||||||| | || |||||||||||||||||||||||||||||
Sbjct 419 AGTTCATGGAGAATGCAATGGCTGGTTCCT-CTTCATTGTCGACTCCAGAAGGAGAAGTC 477
Query 578 AACAGCTTGATGCAGCAAGTAGCAGATGATTACGGTCTTGAAGTTTCTGTTGGACTACCT 637
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 478 AACAGCTTGATGCAGCAAGTAGCAGATGATTACGGTCTTGAAGTTTCTGTTGGACTGCCT 537
Query 638 CAGCCTGCTGGTCATGCCATTCCTACCAAGACTGAAGAGAAAGTTGAGGAGGATGATTTA 697
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 CAGCCTGCTGCTCATGCCATTCCTACCAAGACTGAAGAGAAAGTTGAGGAGGATGATTTA 597
Query 698 ACCAGGAGACTTGCCGAGCTTAAAGCCAGAGGTTAATTAGCTAACCTAACaaaaaa 753
| ||||||||||||||||||||||||||||| |||||| |||||||| |||||||
Sbjct 598 TCTAGGAGACTTGCCGAGCTTAAAGCCAGAGGATAATTAACTAACCTAGCAAAAAA 653
> Ahg476433 jgi|Araly1|476433|fgenesh2_kg.2__1563__AT1G73030.1
Length=978
Score = 649 bits (351), Expect = 0.0
Identities = 537/628 (86%), Gaps = 7/628 (1%)
Strand=Plus/Plus
Query 122 ATGGGTAATACAGATAAGCTGATGAACCAGATCTTTGAATTGAAATTTACGTCAAAGTCT 181
|||||||| ||||||||||||||||| ||||| || || |||||||| ||||| ||||||
Sbjct 110 ATGGGTAACACAGATAAGCTGATGAATCAGATATTCGATTTGAAATTCACGTCCAAGTCT 169
Query 182 CTGCAGAGGCAAGCTAGGAAGTGCGAAAAAGAGGAGAGATCGGAGAAGCTCAAGGTAAAG 241
||||| |||||| | |||||||| || || || |||| | | ||||| | ||||| |||
Sbjct 170 CTGCAAAGGCAATCAAGGAAGTGTGAGAAGGAAGAGAAAGCAGAGAAATTGAAGGTGAAG 229
Query 242 AAAGCCATTGAGAAAGGTAACATGGATGGTGCTCGGATCTATGCCGAGAACGCCATTCGC 301
|| || || ||||| || ||||||||||||||||||||||| || ||||||||||||||
Sbjct 230 AAGGCGATCGAGAAGGGGAACATGGATGGTGCTCGGATCTACGCTGAGAACGCCATTCGT 289
Query 302 AAACGCAGCGAGCAGATGAACTACCTTCGTCTCTCTTCTCGATTGGACGCTGTTGTTGCT 361
|| || |||||||||||||||||||| |||||| ||||||| |||||||||||||||||
Sbjct 290 AAGCGTAGCGAGCAGATGAACTACCTCCGTCTCGCTTCTCGCCTGGACGCTGTTGTTGCT 349
Query 362 CGACTCGATACCCAGGCTAAGATGGCTACCATCACCAAATCGATGACCAACATTGTCAAA 421
|| || ||||| |||||||||||| | |||||||||||||| |||||||| || |||||
Sbjct 350 CGTCTTGATACTCAGGCTAAGATGACCACCATCACCAAATCCATGACCAATATCGTCAAG 409
Query 422 TCCCTCGAATCGTCTCTTACCACTGGCAACT-TACAGAAGATGTCTGAGACGATGGATTC 480
||||| || || || ||| |||| || || | ||||||||||||| ||||| ||||||||
Sbjct 410 TCCCTTGAGTCTTCGCTTGCCACAGGGAA-TCTACAGAAGATGTCAGAGACAATGGATTC 468
Query 481 GTTTGAGAAACAGTTTGTGAACATGGAAGTCCAAGCTGAGTTCATGGATAATGCAATGGC 540
|| ||||| ||||||||||||||||| |||||||||||||||||||| ||||| |||||
Sbjct 469 ATTCGAGAAGCAGTTTGTGAACATGGAGGTCCAAGCTGAGTTCATGGAGAATGCTATGGC 528
Query 541 TGGCTCTACTTCATTGTCGACTCCAGAAGGAGAAGTCAACAG-CTTGATGCAGCAAGTAG 599
||| || ||||||||||| ||||||||||| ||||||||||| ||| |||||||| || |
Sbjct 529 TGGTTCAACTTCATTGTCCACTCCAGAAGGCGAAGTCAACAGCCTT-ATGCAGCAGGTTG 587
Query 600 CAGATGATTACGGTCTT-GAAGTTTCTGTTGGACTACCTCAGCCTGCTGGTCATGCCATT 658
||||||| || ||| || ||||| ||||| ||||| ||||||||||||||||||||||||
Sbjct 588 CAGATGACTATGGT-TTGGAAGTCTCTGTGGGACTTCCTCAGCCTGCTGGTCATGCCATT 646
Query 659 CCTACCAAGACTGAAGAGAAAGTTGAGGAGGATGATTTAACCAGGAGACTTGCCGAGCTT 718
||||| ||||| || |||||||| || ||||| ||||| | ||||| ||||| ||||||
Sbjct 647 CCTACTAAGACAGAGGAGAAAGTCGATGAGGACGATTTGTCAAGGAGGCTTGCAGAGCTT 706
Query 719 AAAGCCAGAGGTTAATTA-GCTAACCTA 745
||||||||||| ||| | |||||||||
Sbjct 707 AAAGCCAGAGGATAAGTGCGCTAACCTA 734
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33166937790
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5