BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G17745.2
Length=2360
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471986 jgi|Araly1|471986|fgenesh2_kg.1__1940__AT1G17745.1 1893 0.0
> Ahg471986 jgi|Araly1|471986|fgenesh2_kg.1__1940__AT1G17745.1
Length=2111
Score = 1893 bits (1025), Expect = 0.0
Identities = 1229/1321 (93%), Gaps = 39/1321 (3%)
Strand=Plus/Plus
Query 854 AGGAGCAAGTACGTCGGTGTATCTCTCGTCGGAAAAACCTTGGCCGTGATGGGTTTCGGG 913
||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||
Sbjct 827 AGGAGCAAGTACGTCGGCGTATCTCTTGTCGGAAAAACCTTAGCCGTGATGGGTTTCGGG 886
Query 914 AAAGTTGGGACGGAGGTGGCGAGAAGAGCCAAAGGTCTAGGCATGACCGTTATCTCCCAC 973
||||| |||||||||||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct 887 AAAGTCGGGACGGAGGTGGCGAGAAGAGCCAAGGGTCTAGGCATGAACGTTATCTCCCAC 946
Query 974 GACCCTTACGCGCCAGCTGACAGAGCCAGAGCTCTCGGTGTCGATCTTGTTTCATTCGAT 1033
|||||||||||||||||||||||||||||||||||||||||||||||||| || || |||
Sbjct 947 GACCCTTACGCGCCAGCTGACAGAGCCAGAGCTCTCGGTGTCGATCTTGTCTCCTTTGAT 1006
Query 1034 CAAGCTATCTCCACCGCCGATTTCGTCTCCCTGCACATGCCTTTAACTCCGGCCACCAAA 1093
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1007 CAAGCTATCTCCACCGCCGATTTCGTCTCCCTCCACATGCCTTTAACTCCGGCCACCAAA 1066
Query 1094 AAGGTCTTCAACGACGAAACTTTCTCTAAGATGAAGAAAGGTGTGCGTCTCATTAATGTC 1153
|||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||
Sbjct 1067 AAGGTCTTCAACGACGAAACCTTCTCGAAGATGAAGAAAGGTGTTCGTCTCATTAATGTC 1126
Query 1154 GCTAGAGGTGGCGTCATCGACGAGGATGCACTCGTTAGAGCTCTCGATGCCGGAATCGTT 1213
|||||||| ||||||||||| |||||||| |||||||||||||| ||| |||||||||||
Sbjct 1127 GCTAGAGGCGGCGTCATCGATGAGGATGCGCTCGTTAGAGCTCTTGATACCGGAATCGTT 1186
Query 1214 GCTCAGGCAGCATTAGATGTGTTCTGTGAGGAACCACCATCGAAAGATAGCAGACTAATT 1273
||||||||||||||||||||||||||||||||||||||||||||||| |||| | | |||
Sbjct 1187 GCTCAGGCAGCATTAGATGTGTTCTGTGAGGAACCACCATCGAAAGACAGCAAATTGATT 1246
Query 1274 CAGCATGAAAATGTTACTGTGACACCTCATCTTGGAGCTAGCACAAAAGAAGCTCAGGAA 1333
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1247 CAGCATGAAAATGTTACTGTAACACCTCATCTTGGAGCTAGCACAAAAGAAGCTCAGGAA 1306
Query 1334 GGTGTAGCCATTGAGATAGCAGAGGCTGTAGCAGGGGCATTGAA-AGGAGAGTTATCAGC 1392
||||||||||| ||||||||||||||||||||||||||||| || ||| ||| |||||||
Sbjct 1307 GGTGTAGCCATCGAGATAGCAGAGGCTGTAGCAGGGGCATT-AAGAGGCGAGCTATCAGC 1365
Query 1393 TACTGCCGTCAATGCTCCAATGGTGGCTCCTGAGGTCTTGTCTGAGTTGACTCCTTATAT 1452
||||| || | | ||| | ||||| | || ||||| ||| | |
Sbjct 1366 TACTG-CG-----G-T-CAA---T-GCTCC--A--------ATG-GTTGA-TCC-T-GA- 1398
Query 1453 TGTCTTAGCTGAGAAGCTTGGGAGGTTAGCTGTGCAGTTAGCATCTGGAGGTAAAGGAGT 1512
|| ||| || | | || |||||||||||||| || |||||||||||| ||||||||||
Sbjct 1399 -GTTTTATCT--G-A-CTAGGGAGGTTAGCTGTCCAATTAGCATCTGGA-GTAAAGGAGT 1452
Query 1513 ACAGTCCATTAGGGTGGTCTATCGGTCAGCTCGTG-ACCGAGATGATTTGGATACTAGAC 1571
|||||||||||||||||| |||||||||||||| | ||||||||||||||||||||||||
Sbjct 1453 ACAGTCCATTAGGGTGGTGTATCGGTCAGCTCG-GAACCGAGATGATTTGGATACTAGAC 1511
Query 1572 TACTTCGTGCAATGATCACAAAGGGAATCATTGAACCGATCTCAGATTCATATGTCAA-C 1630
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 1512 TACTTCGTGCAATGATCACAAAGGGAATCATTGAACCGATCTCAGATTCATACGTCAACC 1571
Query 1631 TTGGTGAATGCTGATTTCATAGCTAAACAAAAGGGTCTTCGTATTAGTGAGGAACGAATG 1690
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1572 TT-GTGAATGCTGATTTCATAGCTAAACAAAAGGGTCTTCGTATTAGTGAAGAACGAATG 1630
Query 1691 GTTGTTGATTCATCACCAGAGTACCCTGTTGATTCCATCCAAGTTCAGATTTTGAATGTG 1750
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1631 GTGGTTGATTCATCACCAGAGTACCCTGTTGATTCTATCCAAGTTCAGATTTTGAATGTG 1690
Query 1751 GAGTCAAATTTCGCTGGTGCTGTCTCTGATGCTGGTGATATAAGTATTGAAGGGAAGGTG 1810
|| || || ||||||||||||||||||||| |||||||||||||||| |||||||| |||
Sbjct 1691 GAATCGAACTTCGCTGGTGCTGTCTCTGATTCTGGTGATATAAGTATCGAAGGGAAAGTG 1750
Query 1811 AAGTACGGAGTTCCGCATTTAACTTGTGTCGGATCATTTGGTGTGGATGTGAGCCTTGAA 1870
|| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1751 AAATATGGAGTTCCGCATTTAACCTGTGTCGGATCATTTGGTGTGGATGTGAGCCTTGAA 1810
Query 1871 GGGAATCTGATACTGTGCAGGCAAGTGGATCAACCAGGGATGATTGGACAGGTTGGTAAC 1930
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1811 GGGAATCTGATACTGTGCAGGCAAGTGGATCAACCAGGGATGATTGGACAGGTTGGTAAC 1870
Query 1931 ATACTTGGAGAACAAAACGTGAATGTGAATTTCATGAGTGTTGGAAGAACAGTGTTGAGG 1990
|||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 1871 ATACTTGGGGAACAAAACGTGAATGTGAATTTCATGAGTGTTGGAAGAACGGTCTTGAGG 1930
Query 1991 AAACAAGCGATAATGGCGATTGGAGTTGATGAAGAACCAGACAACAAAACACTTGAGAGG 2050
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1931 AAACAAGCGATAATGGCGATTGGAGTTGATGAAGAACCAGACAACAAAACACTTGAGAGG 1990
Query 2051 ATTGGGGGTGTTTCTGCGATTGAAGAGTTTGTGTTTCTTAAACTATAAAGTTTGAGATGG 2110
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1991 ATTGGGGGTGTTTCTGCGATTGAAGAGTTTGTGTTTCTGAAACTATAAAGTTTGAGATGG 2050
Query 2111 AGTTGCATTGTGGTGTATGGAGAATAAAACTGTGACCCGGATTAAGGTGTTTTATCCAGT 2170
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 2051 AGTTGCATTGTGGTGTATGAAGAATAAAACTGTGACCCGGATTAAGGTGTTTTATCCTGT 2110
Query 2171 G 2171
|
Sbjct 2111 G 2111
Score = 1151 bits (623), Expect = 0.0
Identities = 705/745 (95%), Gaps = 4/745 (1%)
Strand=Plus/Plus
Query 20 CCACAATGTGAAAGATTAAATTAAAACTCATCCATTACCTCCTGTAAGCTCTATATTAAC 79
||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 74 CCATAATGAGAAAGATTAAATTAAAACTCATCCATTACCTCATGTAAGCTCTATATTAAC 133
Query 80 CACTTTAGCT-CTTCTGCACACACTCACAACAACCAATCATATTTATTATTaaaaaaaaG 138
||| |||| | ||||| ||||||||||||||||||||||||| ||| | |||||||||
Sbjct 134 CACGTTAG-TCCTTCTTCACACACTCACAACAACCAATCATAGTTA-AAAAAAAAAAAAG 191
Query 139 -AGTCATGGCATTTTCATCTTCGTGTTCGTCCGTCAAAGCCGTCAACTCACGGTGGACGT 197
||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 192 CAGTCATGGCATTTTCATCTTCATGTTCGTCCGTCAAGGCCGTCAACTCACGGTGGACGT 251
Query 198 CTCCGTCTCCGTCACCGTCTTCTAGATTCGCCGTCCTCCCTGCTTTCCTTCACCGCCGTT 257
||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 252 CTCCGTCTCCGTCACCGTCTTCTAGATTCGCCGTCATCCCTGCTTTCCTCCACCGCCGTT 311
Query 258 ACGCAACAAGCGTCAAACTAACGGCCATAAGCGCCGCCTTAAAAACCGTCGAGCAAACGA 317
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 312 ACGCAACAAGCGTCAAACTAACGGCCACAAGCGCCGCCTTAAAAACCGTCGAGCAAACGA 371
Query 318 CGTTAACAGAGGATAACAGATTCTCAACCGTCGGATCTGACTCTGATGAATACAATCCAA 377
|||||||||||||||||| |||||| |||||||||||||| ||||||||||| |||||||
Sbjct 372 CGTTAACAGAGGATAACAAATTCTCCACCGTCGGATCTGATTCTGATGAATATAATCCAA 431
Query 378 CTCTTCCAAAGCCGAGGATCCTCGTCACCGAGAAACTGGGAGAAGCCGGCGTGAATCTCC 437
| |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct 432 CGCTTCCAAAGCCGAGGATCCTCGTCGCCGAGAAACTCGGAGAAGCCGGCGTGAATCTCC 491
Query 438 TCAGGGAATTCGGCGACGTTGACTGCTCTTACGATCTTTCGCCGGAAGATCTGAAGAAGA 497
||| ||||||||| ||||||||||||||||| |||||||| ||||| |||||||||||||
Sbjct 492 TCAAGGAATTCGGTGACGTTGACTGCTCTTATGATCTTTCACCGGAGGATCTGAAGAAGA 551
Query 498 AAGTGGCGGAGAGTGACGCTCTGATCGTGAGAAGCGGAACTAAAGTGACGAGGGAAGTGT 557
|||||||||||| |||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 552 AAGTGGCGGAGACTGACGCTCTGATCGTGAGAAGCGGGACAAAAGTGACGAGGGAAGTGT 611
Query 558 TTGAGGCGGCGAAGGGGAGGTTGAAAGTGGTCGGAAGAGCCGGAGTTGGGATTGACAATG 617
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 612 TTGAGGCGGCGAAGGGGCGGTTGAAAGTGGTCGGAAGAGCCGGAGTTGGGATTGACAATG 671
Query 618 TTGATCTGCAGGCGGCGACGGAGCACGGGTGTTTGGTGGTTAATGCTCCAACGGCTAATA 677
||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 672 TTGATCTGCAGGCAGCGACGGAGCACGGCTGTTTGGTGGTTAATGCTCCGACGGCTAATA 731
Query 678 CGGTGGCTGCTGCCGAACATGGAATTGCTTTGCTTGCTTCTATGGCACGTAACGTTGCTC 737
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 732 CGGTGGCCGCTGCCGAACATGGAATTGCTTTGCTTGCTTCTATGGCACGTAACGTCGCTC 791
Query 738 AGGCCGACGCTTCTATTAAAGCCGG 762
|||||||||| ||||||||||||||
Sbjct 792 AGGCCGACGCGTCTATTAAAGCCGG 816
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88902631830
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5