BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G17750.1
Length=3379
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471987 jgi|Araly1|471987|fgenesh2_kg.1__1941__AT1G17750.1 5166 0.0
Ahg908919 jgi|Araly1|908919|Al_scaffold_0002_2000 632 4e-180
Ahg905907 jgi|Araly1|905907|Al_scaffold_0003_3035 52.8 2e-05
> Ahg471987 jgi|Araly1|471987|fgenesh2_kg.1__1941__AT1G17750.1
Length=3355
Score = 5166 bits (2797), Expect = 0.0
Identities = 3184/3372 (94%), Gaps = 22/3372 (1%)
Strand=Plus/Plus
Query 1 ATGAGGAATCTTGGGTTACTCGAAATTACTCTGCTTTGCTCTCTCTTTGTCTATTTCCGT 60
||||||||||||||||| |||||||| ||||||||| ||||||||||||| ||||||||
Sbjct 1 ATGAGGAATCTTGGGTTTGTCGAAATTGCTCTGCTTTCCTCTCTCTTTGTCCATTTCCGT 60
Query 61 ATAGATTCTGTCT-CTAGTTTAAACTCAGATGGTTTGGCTTTACTCTCGCTTCTCAAGCA 119
||||||||||||| || |||||||||||||||| ||||||||||||||||||| || ||
Sbjct 61 ATAGATTCTGTCTCCT-CTTTAAACTCAGATGGTATGGCTTTACTCTCGCTTCTTAACCA 119
Query 120 CTTTGATAAAGTCCCACTTGAAGTAGCTTCGACGTGGAAGGAGAACACATCTGAAACCAC 179
||||||||| ||||||||||||||| ||||||| |||||| | ||||||||| |||||||
Sbjct 120 CTTTGATAACGTCCCACTTGAAGTAACTTCGACATGGAAGAATAACACATCTCAAACCAC 179
Query 180 TCCATGTAATAATAACTGGTTTGGTGTCATTTGTGATCTTTCTGGTAATGTCGTCGAGAC 239
||| ||| |||||||||||||||||||||||||||||| |||||||| | ||||||||
Sbjct 180 TCCCTGTGATAATAACTGGTTTGGTGTCATTTGTGATCACTCTGGTAA--T-GTCGAGAC 236
Query 240 CCTTAATTTGTCTGCTTCTGGGCTTTCAGGCCAATTAGGTTCTGAAATTGGGGAGCTTAA 299
|||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 237 CCTTAATTTGAGTGCTTCTGGGCTTTCAGGCCAATTAAGTTCTGAAATTGGGGAGCTTAA 296
Query 300 GAGCTTGGTCACATTGGATCTCAGTCTTAACAGTTTCTCTGGTTTATTGCCTTCCACTTT 359
|||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 297 GAGCTTGGTCACTTTGGATCTCAGTCTTAACACTTTCTCTGGTTTATTGCCTTCCACTTT 356
Query 360 AGGAAACTGTACTTCACTTGAGTATTTGGATTTGTCTAACAATGATTTTTCTGGAGAAG- 418
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 357 AGGAAACTGTACTTCACTTGAGTATTTGGATTTGTCTAACAATGGCTTTTCTGGAG-AGA 415
Query 419 TTCCTGATATTTTTGGTAGCTTGCAGAATTTGACGTTTCTGTATCTTGATCGCAATAATC 478
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 416 TTCCTGATATTTTTGGTAGCTTGCAGAATTTGACGTTTCTGTATCTTGATCGTAATAATC 475
Query 479 TTAGTGGTCTCATTCCTGCAAGTGTTGGTGGGTTGATAGAGCTCGTAGATCTGAGGATGT 538
|||||||||| |||||||||||| ||||| |||||||||| ||||||||||||||| |||
Sbjct 476 TTAGTGGTCTGATTCCTGCAAGTATTGGTCGGTTGATAGACCTCGTAGATCTGAGGTTGT 535
Query 539 CATATAATAACTTGTCTGGTACCATTCCAGAGTTGCTTGGGAACTGTAGTAAGCTGGAAT 598
| |||||||||||||||||||||||||| |||| | |||||||||| | |||||||||||
Sbjct 536 CTTATAATAACTTGTCTGGTACCATTCCTGAGTCGATTGGGAACTGCACTAAGCTGGAAT 595
Query 599 ATCTGGCTTTGAACAACAACAAGTTAAATGGTTCTTTGCCAGCAAGTCTCTATCTACTCG 658
|| |||||||||||||||||| ||| ||||||||||||||||||||||| ||||||| |
Sbjct 596 ATATGGCTTTGAACAACAACATGTTTGATGGTTCTTTGCCAGCAAGTCTCAATCTACTTG 655
Query 659 AGAATCTTGGTGAGCTATTTGTCAGTAACAACAGCCTTGGAGGGAGGCTTCATTTTGGTT 718
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 AGAATCTTGGTGAGTTGTTTGTCAGTAACAACAGCCTTGGAGGGAGGCTTCATTTTGGTT 715
Query 719 CTAGCAACTGCAAGAAATTGGTTTCTTTAGATCTCTCGTTCAATGATTTCCAAGGCGGTG 778
|||||||||||||||| ||||| | |||||||| ||||||||||||||||||||||| |
Sbjct 716 CTAGCAACTGCAAGAAGTTGGTGACGTTAGATCTGTCGTTCAATGATTTCCAAGGCGGAG 775
Query 779 TTCCACCTGAGATAGGCAACTGCAGTAGCCTTCACTCTTTAGTCATGGTGAAATGCAACT 838
|||||||||| || ||||| |||| ||| |||||||||||| ||||||||||||||||||
Sbjct 776 TTCCACCTGAAATTGGCAAGTGCACTAGTCTTCACTCTTTACTCATGGTGAAATGCAACT 835
Query 839 TGACAGGTACAATCCCATCATCAATGGGTATGTTGAGAAAGGTTTCGGTTATTGACCTTT 898
|||||||||||||||||||||| ||||| |||| | |||||||||| ||||||||||||
Sbjct 836 TGACAGGTACAATCCCATCATCCTTGGGTTTGTTAAAAAAGGTTTCGCTTATTGACCTTT 895
Query 899 CCGATAATCGTCTCTCGGGGAATATCCCTCAAGAGCTTGGGAACTGCAGCAGCTTGGAAA 958
||| ||| ||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 896 CCGGGAATGGTCTCTCCGGGAATATACCTCAAGAGCTTGGGAACTGCAGCAGCTTGGAAA 955
Query 959 CCTTGAAGCTGAACGACAACCAGCTCCAAGGCGAGATACCACCTGCATTGAGTAAGCTAA 1018
||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |||||
Sbjct 956 CCTTGAAGCTGAACGACAACCAGCTCCAAGGCGAGTTACCACCTGCATTGGGTATGCTAA 1015
Query 1019 AGAAGCTACAAAGCCTGGAGCttttttttAATAAGCTGTCCGGTGAGATTCCTATTGGCA 1078
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1016 AGAAGCTACAAAGCCTGGAGCTTTTTGTTAATAAGCTGTCCGGTGAGATTCCTATTGGCA 1075
Query 1079 TATGGAAGATTCAGAGTCTGACACAGATGCTCGTTTATAACAACACTCTCACCGGGGAAC 1138
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 1076 TATGGAAGATTCAGAGTCTGACACAGATGCTCATTTATAACAACACTGTCACCGGGGAAC 1135
Query 1139 TACCAGTTGAAGTAACTCAGCTGAAGCACCTTAAGAAGCTTACACTGTTTAACAACGGCT 1198
||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |||
Sbjct 1136 TACCAGTTGAAGTAACTCAGCTGAAGCACCTTAAGAAGCTTACGCTTTTTAACAACAGCT 1195
Query 1199 TTTATGGAGATATACCAATGAGTTTAGGCCTGAATCGAAGCTTAGAGGAGGTGGACCTTC 1258
|||||||| | |||||||||||||||||| |||||| ||||||||||||| ||||| |||
Sbjct 1196 TTTATGGACAGATACCAATGAGTTTAGGCATGAATCAAAGCTTAGAGGAGATGGACTTTC 1255
Query 1259 TTGGTAACCGTTTTACAGGGGAGATACCACCCCATCTCTGCCATGGACAGAAGTTGAGAT 1318
|||||||||||||||| ||||||||||||||| |||||||||||||||| |||||||||
Sbjct 1256 TTGGTAACCGTTTTACCGGGGAGATACCACCCAATCTCTGCCATGGACACAAGTTGAGAA 1315
Query 1319 TGTTCATCTTGGGTTCTAATCAGCTTCATGGTAAGATACCAGCGTCTATTCGTCAGTGTA 1378
| |||||||||||||||||||||||||||||||| || ||||||||||||| ||||||||
Sbjct 1316 TATTCATCTTGGGTTCTAATCAGCTTCATGGTAATATTCCAGCGTCTATTCATCAGTGTA 1375
Query 1379 AGACCCTTGAGCGAGTCAGACTTGAAGATAACAAACTTTCAGGTGTTCTTCCGGAATTCC 1438
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1376 AGACCCTTGAGAGAGTCAGACTTGAAGATAACAAACTTTCAGGTGTTTTTCCGGAATTCC 1435
Query 1439 CTGAGAGTCTTAGTCTTTCCTATGTGAACCTCGGAAGCAATAGCTTTGAAGGATCCATCC 1498
|| ||| ||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 1436 CT--GAG----AGTCTTTCCTATGTGAACCTCGGAAGCAACAGCTTTGAAGGGTCCATCC 1489
Query 1499 CGCGCAGCTTGGGAAGCTGTAAAAATCTCTTGACTATTGACCTTTCTCAAAACAAACTCA 1558
||| |||||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 1490 CGCACAGCTTGGGAAGCTGTAAAAATCTCTTGACCATTGACCTTTCTCGAAACAAACTCA 1549
Query 1559 CGGGTCTGATACCTCCAGAACTGGGAAATCTGCAAAGCCTTGGACTGTTGAACCTTTCAC 1618
||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 1550 CGGGTCTGATACCTCCAGAACTGGGAAATCTGCAAAGCCTTGGACAGTTGAATCTTTCAC 1609
Query 1619 ATAATTATCTGGAAGGTCCTCTGCCATCCCAGCTATCAGGCTGTGCGAGACTTCTGTATT 1678
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1610 ATAATCATCTGGAAGGTCCTCTGCCATCCCAGCTATCAGGCTGTGCGAGACTTCTGTATT 1669
Query 1679 TTGATGTTGGATCCAACTCATTGAACGGTTCTATTCCATCAAGCTTCAGAAGCTGGAAAA 1738
|||||||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 1670 TTGATGTTGGGTCCAACTCATTGAACGGTTCTGTTCCATCGAGCTTCAGAAGCTGGAAAA 1729
Query 1739 GCTTGTCCACTTTAGTTCTCAGTGACAATAATTTTCTAGGAGCTATTCCACAGTTCTTGG 1798
||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 1730 GCTTGTCCACTTTAGTTCTCAGTGACAATAATTTTCTAGGAGCCATTCCACCGTTCTTGG 1789
Query 1799 CAGAGCTTGACCGACTCTCAGATCTGCGGATAGCTCGAAATGCTTTTGGAGGTAAGATTC 1858
||||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 1790 CAGAGCTTGACCGCCTCTCAGATCTGCGGATGGCTCGAAATGCTTTTGGAGGTGAGATTC 1849
Query 1859 CTTCCTCGGTTGGCTTGTTGAAGAGTCTACGCTATGGCTTAGACCTCAGTGCGAACGTAT 1918
||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1850 CTTCCTCGGTTGGTTTGTTGAAGAGTCTACGCTATGGCTTAGACCTCAGTGGGAACGTAT 1909
Query 1919 TTACGGGTGAGATTCCAACCACACTGGGGGCTCTTATCAATCTTGAACGTCTCAACATAT 1978
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1910 TTACGGGTGAGATTCCAACCACACTGGGGGCTCTTATCAATCTTGAACGGCTCAACATAT 1969
Query 1979 CCAACAACAAGTTGACAGGGCCTTTATCGGTTCTTCAAAGTCTTAAGTCATTGAATCAAG 2038
|||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||||||
Sbjct 1970 CCAACAACAAGTTGACAGGGTCTTTATCGGCTCTTCAAAGTCTTAATTCATTGAATCAAG 2029
Query 2039 TTGACGTCTCGTATAATCAGTTCACGGGTCCAATACCCGTAAATCTGTTATCAAATTCTT 2098
||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 2030 TTGACGTCTCGTATAATCAGTTCACGGGTCCAATACCAGTAAATCTGATATCAAATTCTT 2089
Query 2099 CAAAGTTTTCTGGAAATCCAGACCTCTGCATTCAAGCTTCTTACTCAGTGAGTGCCATAA 2158
|||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2090 CAAAGTTTTCGGGAAATCCAGACCTCTGCATTCAACCTTCTTACTCAGTGAGTGCCATAA 2149
Query 2159 TCCGCAAAGAGTTTAAATCTTGCAAAGGTCAAGTCAAACTTAGCACGTGGAAGATCGCCC 2218
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2150 TCCGCAACGAGTTTAAATCTTGCAAAGGTCAAGTCAAACTTAGCACCTGGAAGATCGCCC 2209
Query 2219 TTATAGCAGCTGGGTCCTCACTATCCGTATTGGCTTTGCTTTTTGCTCTCTTTTTGGTTT 2278
|||||||||||| ||| || ||||||||| ||||||||||||||||| || ||||| |||
Sbjct 2210 TTATAGCAGCTGCGTCATCTCTATCCGTAGTGGCTTTGCTTTTTGCTATCGTTTTGTTTT 2269
Query 2279 TATGCCG-GTGCAAAAGAGGAACCAAGACAGAAGATGCTAATATCCTCGCAGAGGAAGGT 2337
| ||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2270 TTTGCCGCG-GCAAAAGAGGAGCCAAGACAGAAGATGCTAATATCCTCGCAGAGGAAGGT 2328
Query 2338 CTGTCCTTGTTGCTGAACAAAGTTCTAGCAGCCACTGACAATCTAGATGACAAGTACATC 2397
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2329 CTGTCCTTGTTGCTGAACAAAGTTCTAGCAGCCACTGACAATCTAGATGACAAGTACATC 2388
Query 2398 ATTGGAAGAGGAGCTCATGGAGTTGTTTACAGAGCTTCTTTAGGATCAGGCGAAGAATAC 2457
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2389 ATTGGAAGAGGAGCTCATGGAGTTGTTTACAGAGCTTCTTTAGGATCAGGCGAAGAATAC 2448
Query 2458 GCCGTGAAGAAACTCATCTTTGCGGAACACATTCGCGCAAACCAAAATATGAAGCGGGAG 2517
||||||||||||||| |||||||||||||||| |||||||||| |||||||||| |||||
Sbjct 2449 GCCGTGAAGAAACTCTTCTTTGCGGAACACATACGCGCAAACCGAAATATGAAGAGGGAG 2508
Query 2518 ATCGAAACAATCGGGCTAGTCAGGCACAGAAATCTCATTCGGTTAGAAAGATTTTGGATG 2577
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2509 ATCGAAACAATCGGGCTAGTCAGGCACAGAAATCTCATTCGGTTAGAAAGATTTTGGATG 2568
Query 2578 AGGAAAGAAGATGGCTTAATGCTGTATCAGTACATGCCCAATGGAAGCCTACACGACGTT 2637
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2569 AGGAAAGAAGATGGCTTAATGCTGTATCAGTACATGCCCAAAGGAAGCCTACACGACGTT 2628
Query 2638 TTGCACAGAGGTAATCAAGGAGAAGCAGTTCTTGACTGGTCTGCACGGTTCAACATAGCC 2697
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2629 TTGCACAGAGGTAATCAAGGAGAAGCAGTTCTTGACTGGTCTGCACGGTTTAACATAGCC 2688
Query 2698 CTTGGGATTTCACATGGACTGGCGTATTTACATCATGATTGTCATCCACCAATAATTCAC 2757
||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 2689 CTTGGGATTTCACATGGACTGGCGTATCTACACCATGATTGTCATCCACCAATAATTCAC 2748
Query 2758 CGCGACATCAAACCAGAGAACATACTCATGGACTCGGATATGGAGCCTCACATTGGAGAT 2817
|| |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 2749 CGTGACATCAAACCAGAGAACATACTCATGGACTCGGATTTAGAGCCTCACATTGGAGAT 2808
Query 2818 TTCGGATTGGCTCGGATTCTAGATGACTCAACAGTTTCAACGGCCACTGTTACTGGCACA 2877
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2809 TTCGGATTGGCTCGGATTCTAGATGACTCAACAGTTTCAACGGCCACCGTTACTGGCACA 2868
Query 2878 ACTGGGTACATTGCACCAGAAAATGCGTACAAGACGGTGAGGAGCAAGGAATCAGATGTT 2937
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2869 ACTGGGTACATTGCACCAGAAAATGCGTACAAGACGGTGAGGAGCAAGGAATCAGATGTT 2928
Query 2938 TACAGTTATGGAGTTGTTTTGCTCGAGCTGGTAACAGGAAAGAGAGCACTGGACAGATCT 2997
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2929 TACAGTTATGGAGTTGTTTTGCTCGAGCTGGTAACAGGAAAGAGAGCAGTGGACAGATCT 2988
Query 2998 TTCCCGGAAGATATCAACATTGTGAGCTGGGTCAGATCTGTATTAAGCAGCTACGAGGAT 3057
||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2989 TTCCCAGAAGATATCAATATTGTGAGCTGGGTCAGATCTGTATTAAGCAGCTATGAGGAT 3048
Query 3058 GAAGACGATACTGCTGGTCCAATCGTTGATCCAAAACTTGTGGATGAGCTTCTGGATACG 3117
||||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 3049 GAAGATGATACTGTTGGTCCAATCGTTGATCCAACACTTGTGGATGAGCTTCTGGATACG 3108
Query 3118 AAGCTCAGGGAACAAGCAATCCAAGTCACAGACTTGGCTCTTAGATGTACAGACAAGAGG 3177
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 3109 AAGCTCAGGGAACAAGCAATCCAAGTCACAGACTTGGCTCTTAGATGTACGGACAAGAGG 3168
Query 3178 CCGGAGAACAGACCATCGATGAGAGATGTGGTGAAAGATTTGACTGATTTGGAAAGTTTT 3237
|||| |||||||||||| ||| |||||||||||||||||||||||||||| ||||||||
Sbjct 3169 CCGGGGAACAGACCATCCATGCGAGATGTGGTGAAAGATTTGACTGATTTAAAAAGTTTT 3228
Query 3238 GTAAGAAGCACTTCGGGTTCAGTTCACTAGTTTCATAAGTTGCAGGTTTATATAGTGT-A 3296
||||| |||||| |||||||||||||||||||||| ||||||||||||||||| | |
Sbjct 3229 GTAAG---CACTTCTGGTTCAGTTCACTAGTTTCATATTTTGCAGGTTTATATAGT-TCA 3284
Query 3297 CTGTTCTTTGAAACCACTAATATAATTGTAACTACCATTGAATA-CCGTGAAGATTTGAG 3355
| |||||||| ||| |||||| |||||||||| ||| |||| || || ||||||||||||
Sbjct 3285 C-GTTCTTTGTAACTACTAATTTAATTGTAACCACCGTTGAGTAACCTTGAAGATTTGAG 3343
Query 3356 AAACATATATAT 3367
||||||||||||
Sbjct 3344 AAACATATATAT 3355
> Ahg908919 jgi|Araly1|908919|Al_scaffold_0002_2000
Length=3369
Score = 632 bits (342), Expect = 4e-180
Identities = 823/1049 (78%), Gaps = 58/1049 (6%)
Strand=Plus/Plus
Query 2197 CTTAGCACGTGG-AAGATCGCCCTTATAGCAG-CTGGGTCCTCACTATCCGTATTGGCTT 2254
|||||||| ||| || |||| |||||||| | || ||||| ||| ||| |||| ||
Sbjct 2290 CTTAGCACCTGGCAA-ATCGTGCTTATAGCGGTCT-TATCCTCTTTATTCGTCTTGG-TT 2346
Query 2255 -TGCTTTTTGCTCTCT-TTTTGGTTT---TATGCCGGT-GCAAAAGAGGAACCAAGACAG 2308
|| || ||||||| | |||| ||| || | | || ||||| || | ||| ||| |
Sbjct 2347 GTGGTTCTTGCTCT-TGTTTTCATTTGCCTACGTC-GTCGCAAAGGAAG-ACC-AGA-AA 2401
Query 2309 AAGATGCTAATATC--CTCGCA-GAGGAAGGTCTGTCCTTGTTGCTGAACAAAGTTCTAG 2365
|||||||| || || | | || |||||||| | || |||||| ||||||||||||| |
Sbjct 2402 AAGATGCTTATGTCTTCACCCAGGAGGAAGGCCCATCTTTGTTGTTGAACAAAGTTCTTG 2461
Query 2366 CAGCCACTGACAATCTAGATGACAAGTACATCATTGGAAGAGGAGCTCATGGAGTTGTTT 2425
|||| |||||||||||| | || |||||||||||||||||||||||||| ||| |||| |
Sbjct 2462 CAGCAACTGACAATCTAAACGAAAAGTACATCATTGGAAGAGGAGCTCACGGAATTGTGT 2521
Query 2426 ACAGAGCTTCTTTAGGATCAGGCG-AA-GAATACGCCGTGAAGAAACTCATCTTTGCGGA 2483
|||||||||||||||| || || | || | ||||| ||||||| ||| |||| ||
Sbjct 2522 ACAGAGCTTCTTTAGGCTC-GG-GAAAGGTCTACGCTGTGAAGAGACTTGTCTTCGCATC 2579
Query 2484 ACACATTCGCGCAAACCAAAATATGAAGCGGGAGATCGAAACAATCGGGC-TAGTCAGGC 2542
||||| ||||| ||||| | ||||| | | |||||||| |||||| ||| ||||||||
Sbjct 2580 TCACATCCGCGCTAACCAGAGTATGATGAGAGAGATCGATACAATC-GGCAAAGTCAGGC 2638
Query 2543 ACAGAAATCTCATTC-GGTTAGAAAGATTTTGGATGAGGAAAGAAGATGGCTTAATGCTG 2601
|||| ||||| | || ||||||| | |||||| |||||||||| ||||| || ||||||
Sbjct 2639 ACAGGAATCTGA-TCAAGTTAGAAGGGTTTTGGCTGAGGAAAGATGATGGTTTGATGCTG 2697
Query 2602 TATCAG-TACATGCCCAATGGAAGCCTACACGACGTTTTGCACAGAGGTA-ATCAAGGAG 2659
||| || ||||||||||| |||||||| |||| ||| | || | | || ||| ||
Sbjct 2698 TAT-AGATACATGCCCAAAGGAAGCCTGTACGATGTTCTCCATGGTGTTAGCCCAA-AAG 2755
Query 2660 AAGCA-GTTCTTGACTGGTCTGCACGGTTCAACATAGCCCTTGG-GATTTCACATGGACT 2717
|| | || || |||||||||||||||| |||| |||| || || | | | || |||||
Sbjct 2756 AA-AATGTACTAGACTGGTCTGCACGGTACAACGTAGCGCTCGGTG-TCGCTCACGGACT 2813
Query 2718 GGCGTATTTACATC-ATGATTGTCATCCACCAATAATTCACCGCGACATCAAACCAGAGA 2776
||| ||| |||| | |||| |||||||| || || ||||||| ||||||||||||||||
Sbjct 2814 GGCCTATCTACA-CTATGACTGTCATCCCCCGATTGTTCACCGTGACATCAAACCAGAGA 2872
Query 2777 ACATACTCATGGACTCGGATATGGAGCCTCACATTGGAGATTTCGGATTGGCTCGGATTC 2836
|||||||||||||||||||| |||||||||||||||| |||||||| |||||||| |||
Sbjct 2873 ACATACTCATGGACTCGGATTTGGAGCCTCACATTGGGGATTTCGGTTTGGCTCGCCTTC 2932
Query 2837 TAGATGACTCAACAGTTTCAACGGCCACTGTTACTGGCACAACTGGGTACATTGCACCAG 2896
| ||||||||||| |||||||| || |||||||| || || |||||||||||||||||||
Sbjct 2933 TCGATGACTCAACGGTTTCAACTGCAACTGTTACAGGAACCACTGGGTACATTGCACCAG 2992
Query 2897 AAAATGCGTACAAGACGGTGAGGAGCAAG-GAATCAGATGTTTACAGTTATGGAGTTGTT 2955
|||| || | ||| || |||||| | ||| ||||| || ||||||||||||||||| ||
Sbjct 2993 AAAACGCTTTCAAAACCGTGAGGGG-AAGAGAATCCGACGTTTACAGTTATGGAGTCGTG 3051
Query 2956 TTGCTCGAGCTGGTAAC-AGGAAAGAGAGCACTGGACAGATCTTTCCCGGA-AGATATCA 3013
|| |||||||||||||| ||||| |||||| |||||| ||| |||||||| || || ||
Sbjct 3052 TTACTCGAGCTGGTAACGAGGAA-GAGAGCGGTGGACAAATCCTTCCCGGACAG-TA-CA 3108
Query 3014 -ACATTGTGAGCTGGGTCAGATCTGTATT-A--AGCAGCTACGAGGATGAAGACGATACT 3069
| || || |||||||| ||||||||||| | |||||| || | ||| || || | |
Sbjct 3109 GATATAGTAAGCTGGGTGAGATCTGTATTGAGCAGCAGCAACAACAATGTGGAGGACA-T 3167
Query 3070 GCTGGTC--CAATCGTTGATCCAAAACTTGTGGATGAGCTTCTGGATACGAAGCTCAGGG 3127
| | | ||||| | |||||| || ||||| ||||| || ||| |||| || ||||
Sbjct 3168 GGTAA-CAACAATCATCGATCCACTTCTGGTGGACGAGCTCCTAGATTCGAATCTTAGGG 3226
Query 3128 AACAAGCAATCCAAGTCACAGA-CTTGGCTCTTAGATGTACAGACAAG-AGGCCGGAGAA 3185
|||| | |||||||| || || || ||| || | ||||| || ||| | |||| ||
Sbjct 3227 AACAGGTGATCCAAGTGACGGAACT-GGCACTGACTTGTACGGAGAAGGAT-CCGGC-AA 3283
Query 3186 C-AGACCATCGATGAGAGATGTGGTGAAA 3213
|||||| |||||||||||| |||||||
Sbjct 3284 TGAGACCAACGATGAGAGATGCGGTGAAA 3312
> Ahg905907 jgi|Araly1|905907|Al_scaffold_0003_3035
Length=351
Score = 52.8 bits (28), Expect = 2e-05
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 2669 TTGACTGGTCTGCACGGTTCAACATAGC 2696
||||||||||||||||||||||||||||
Sbjct 74 TTGACTGGTCTGCACGGTTCAACATAGC 101
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 127568984696
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5