BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G17770.1 Length=2082 Score E Sequences producing significant alignments: (Bits) Value Ahg312743 jgi|Araly1|312743|fgenesh1_pm.C_scaffold_1001523 2200 0.0 Ahg899869 jgi|Araly1|899869|Al_scaffold_0004_519 1609 0.0 Ahg344061 jgi|Araly1|344061|fgenesh1_pg.C_scaffold_4000403 1136 0.0 > Ahg312743 jgi|Araly1|312743|fgenesh1_pm.C_scaffold_1001523 Length=2937 Score = 2200 bits (1191), Expect = 0.0 Identities = 1680/1909 (88%), Gaps = 61/1909 (3%) Strand=Plus/Plus Query 125 CATCTGCAACATCTCCTCTTCTAATGGTCCCACCTCTTCGAACAATCTGGCCATCCAACA 184 |||||||||||||||||| | |||||||| ||||||| ||||| |||||||||||||||| Sbjct 161 CATCTGCAACATCTCCTCCTATAATGGTCTCACCTCTGCGAACCATCTGGCCATCCAACA 220 Query 185 AGGAATGGTACGATGGAGATGCTGGTCCTAGTAGTACTGGTCCAATCAAACGAGAAGCGT 244 |||| ||||| ||||||||||||||||| ||||||||||||||||||||||||| ||| Sbjct 221 AGGACTGGTATGATGGAGATGCTGGTCC---TAGTACTGGTCCAATCAAACGAGAACCGT 277 Query 245 CCGATAATACTAATGATACAGCACACAACACATTTGCAC-CTCCTCCAGAAATGGTCA-T 302 || | | |||| | | | |||||| || |||| | || || |||||||| | | Sbjct 278 TCG-----A-TGATGA-A-A-CGCACAACTTATCCGCACAC-CCACCTGAAATGGTGACT 327 Query 303 ACCACTGATCACCATTAGGCCAAGTGATGACTCTAGCAACTATTCTTGTGATGCGGGTGC 362 ||||||| |||||||||||||| ||||||||||| |||| ||||| ||||||||||| Sbjct 328 -CCACTGAACACCATTAGGCCAATTGATGACTCTAACAACAATTCTAATGATGCGGGTGT 386 Query 363 TGGTCCTAGTACTGGTCCAGTAAAACGAGGCCGTGGCCGACCAAAAGGTTCAAAAAACTC 422 ||||| ||| |||| ||||| ||||||||| ||||||||||||||||||||||||||||| Sbjct 387 TGGTCTTAGCACTGTTCCAGCAAAACGAGGACGTGGCCGACCAAAAGGTTCAAAAAACTC 446 Query 423 AACGCCGACGGAGCCGAAGAAGCCAAAAGTATATGATCCCAACAGCTTAAAGGTTAC-A- 480 |||| |||| |||| ||||||| ||||||||||||||||||||||||||| |||||| | Sbjct 447 AACGTCGACCGAGCGGAAGAAGACAAAAGTATATGATCCCAACAGCTTAAGGGTTACAAC 506 Query 481 -TCTCGTGGGAATTTCGATTCAGAGATAACCGAAGCAGAGACAGAAACTGGAAACCAGGA 539 | || ||||||||| ||||||||||||||||| ||||||| ||||| ||||||||| || Sbjct 507 TTTTCTTGGGAATTTTGATTCAGAGATAACCGACGCAGAGAGAGAAAATGGAAACCAAGA 566 Query 540 GATAGTTGATTCCGTTATGATGCGGTTTGATGCGGTTAGACGACGATTATGCCAAATAAA 599 | ||| |||||| || |||||||||||||||||||||||||| |||||||||||| |||| Sbjct 567 GTTAGCTGATTCAGTAATGATGCGGTTTGATGCGGTTAGACGCCGATTATGCCAACTAAA 626 Query 600 CCATCCGGAAGACATCCTTACAACGGC-AAGTGGC-AATTGCACGAAA-ATGGGTGTCAA 656 || | |||||||||||||| |||||| || | | |||| ||||||| |||| ||||| Sbjct 627 CCCTACGGAAGACATCCTTGTAACGGCTAA-T-ACGAATTTCACGAAATTTGGG-GTCAA 683 Query 657 GACAAATACAAGAAGGAGAATTGGTGCAGTTCCTGGAATACACGTCGGAGATATATTCTA 716 ||||||||| ||||||||||| ||| ||||||||||| |||| || |||||||||||||| Sbjct 684 GACAAATACGAGAAGGAGAATAGGTCCAGTTCCTGGAGTACAAGTAGGAGATATATTCTA 743 Query 717 -TTACTGGGGTGAAATGTGCTTAGTGGGGCTTCACAAATCAAATTAT-GGTGGTATTGAt 774 || |||||||||||||||||||||||||||||||| | ||||| | || || |||||| Sbjct 744 CTT-CTGGGGTGAAATGTGCTTAGTGGGGCTTCACAGA-CAAATGGTCGGCGGCATTGAT 801 Query 775 ttttttACGGCTGCAGAGAGTGCAGTGGAAGGCCATGCTGCTATGTGTGTGGTAACAGCA 834 ||| | |||||||||||||||| ||||||||| |||||||| | | ||||||| |||||| Sbjct 802 TTTCTGACGGCTGCAGAGAGTGTAGTGGAAGGTCATGCTGCAACGAGTGTGGTCACAGCA 861 Query 835 GGACAATACGATGGTGAAACCGAGGGGCTTGACA-CGTTGATCTACAGCGGACAGGGCGG 893 ||||||||||||| ||||||||| |||||||| | |||||||||| |||||||||| || Sbjct 862 GGACAATACGATGATGAAACCGATGGGCTTGA-ATCGTTGATCTATTGCGGACAGGGTGG 920 Query 894 AACGGACGTGTACGGTAACGCTCGTGATCAAGAGATG-AAGGGCGGGAATCTTGCACTAG 952 | ||||| || |||| | | |||||||||| || ||||| || ||||||||||| | Sbjct 921 ATCGGACAAGTCCGGTCGTGTTTTTGATCAAGAGCTGAAAGGG-GGAAATCTTGCACT-G 978 Query 953 -AAGCAAGTGTAAGCAAAGGGAATGACGTTAGAGTCGTGAGAGGAGTGATACATCCTCAT 1011 |||||||||||||||||||||||||||||||||||||||| |||||||| |||||| | Sbjct 979 AAAGCAAGTGTAAGCAAAGGGAATGACGTTAGAGTCGTGAGGGGAGTGATGCATCCTTTT 1038 Query 1012 GAGAACAATCAGAAGATATATATCTACGATGGGATGTATCTGGTTTCAAAGTTCTGGACA 1071 || |||||||||||| |||||||||| |||||||| ||||||||| || ||| ||||||| Sbjct 1039 GACAACAATCAGAAGGTATATATCTATGATGGGATTTATCTGGTTACAGAGTCCTGGACA 1098 Query 1072 GTGACAGGAAAATCCGGCTTCAAGGAGTTCAGATTCAAATTGGTGAGGAAACCAAACCAA 1131 ||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||||||| Sbjct 1099 GTGACAGGAAAATCCGGTTTCATGGAGTTCAGATTCAAATTGGTAAGGAAACCAAACCAA 1158 Query 1132 CCTCCTGCTTATGCAATCTGGAAAACAGTTGAAAATCTGAGGAACCATGACTTGATTGAT 1191 ||| ||| |||||||||||||||| |||||||||| ||||| || |||||||||||||| Sbjct 1159 CCTTCTGGTTATGCAATCTGGAAATTAGTTGAAAATTTGAGGGACAATGACTTGATTGAT 1218 Query 1192 TCAAGGCAAGGTTTTATACTT-GAAGATCTTTCTTTTGGAGCTGAGCTTTTACGAGTTCC 1250 ||||||| ||||||||| ||| || ||||||||||||||||||||||||||||||||||| Sbjct 1219 TCAAGGCCAGGTTTTATCCTTAGA-GATCTTTCTTTTGGAGCTGAGCTTTTACGAGTTCC 1277 Query 1251 GCTCGTTAATGAAGTTGATGAAGATGACAAAACGATTCCCGAAGATTTTGATTACATCCC 1310 ||| ||||||||||| |||||||| |||||||||||||||||||||||||| |||||| | Sbjct 1278 GCTTGTTAATGAAGTCGATGAAGACGACAAAACGATTCCCGAAGATTTTGACTACATCAC 1337 Query 1311 CTCTCAGTGTCACTCTGGTATGATGACGCATGAATTTCATTTTGATCGTCAATCACTTGG 1370 |||||||||||||||||||||| || | || |||| |||||||||||| Sbjct 1338 ATCTCAGTGTCACTCTGGTATGA---CG--T---TT-------GATCTTCAATCACTTGG 1382 Query 1371 ATGCCAGAATTGTCGACATCAGCCATGCAT-GCATCAAAACTGCACCTGCGTGCAGAGAA 1429 |||||| |||| || ||||||| ||||||| | |||||||| |||||||| |||||||| Sbjct 1383 ATGCCAAAATTTTCAACATCAGTCATGCATTG-ATCAAAACAGCACCTGCAAGCAGAGAA 1441 Query 1430 ACGGTGACCTGCTACCGTACCATAACAACATTTTGGTTTGTCGTAAACCATTGATTTACG 1489 |||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1442 ACGGTGGCCTACTACCGTACCATAACAACATTTTGGTTTGTCGTAAACCGTTGATTTACG 1501 Query 1490 AGTGCGGTGGATCTTGTCCTTGCCCCGACCATTGCCCAACCCGGTTGGTTCAAACCGGTT 1549 |||||||||| |||||||| ||||| || ||||||||||| |||||||||||||||| | Sbjct 1502 AGTGCGGTGGTTCTTGTCCATGCCCTAACAATTGCCCAACCAGGTTGGTTCAAACCGGCT 1561 Query 1550 TGAAACTCCATTTGGAAGTGTTCAAGACAAGAAACTGTGGTTGGGGTTTACGTTCTTGGG 1609 |||||||||| ||||||||||||||||||||||||||||||||||||||| | || |||| Sbjct 1562 TGAAACTCCAGTTGGAAGTGTTCAAGACAAGAAACTGTGGTTGGGGTTTAAGGTCATGGG 1621 Query 1610 ATCCAATCCGAGCCGGAACTTTTATCTGCGAGTTTGCTGGTTTGAGAAAGAC-A--AAAG 1666 ||||||| ||||| |||| |||||||||||||||||| ||| |||||||||| | |||| Sbjct 1622 ATCCAATTCGAGCTGGAAGTTTTATCTGCGAGTTTGCCGGTGTGAGAAAGACGACGAAAG 1681 Query 1667 AAGAAGTAGAAGAGGATGATGATTACTTGTTCGACACGTCAAAGATTTATCAGAGGTTCA 1726 |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| | Sbjct 1682 AAGAAGTAGAAGAGGATGATGATTACTTGTTCGACACGTCTAAGATTTATCCCAGGTTTA 1741 Query 1727 GATGGAACTACGAACCTGAGCTTTTGCTTGAAGATAGTTGGGAACAAGTCTCTGAATTTA 1786 ||||||||||||||||||||||||||||| |||| ||||||| |||||||| ||||||| Sbjct 1742 AATGGAACTACGAACCTGAGCTTTTGCTTGGAGATTGTTGGGAGCAAGTCTCAGAATTTA 1801 Query 1787 TCAATCTTCCAACACAAGTCTTGATAAGTGCTAAGGAAAAAGGGAATGTTGGTCGGTTCA 1846 |||||||||||||||||||||||||||| || |||||||| || |||||||||||||||| Sbjct 1802 TCAATCTTCCAACACAAGTCTTGATAAGCGCCAAGGAAAACGGAAATGTTGGTCGGTTCA 1861 Query 1847 TGAATCACAGTTGTTCACCGAATGTTTTCTGGCAGCCTATTGAGTATGAAAACAGA-GGT 1905 |||| ||||| ||||||||||||||||||||||||||||| ||||||||||||| | ||| Sbjct 1862 TGAACCACAGCTGTTCACCGAATGTTTTCTGGCAGCCTATAGAGTATGAAAACA-ACGGT 1920 Query 1906 GATGTATATCTTCTTATCGGACTTTTTGCTATGAAGCATATTCCTCCGATGACAGAGTTA 1965 ||| ||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||| Sbjct 1921 GATATATATATTCTTATTGGACTTTTTGCTATGAAGCATATTCCTCCAATGACAGAGTTA 1980 Query 1966 ACATATGACTATGGAGTTTCAT-GTGTGGAGAGGAGCGAAGAAGATGAA 2013 |||||||||||||||||||| | |||||||||||| ||||||||||||| Sbjct 1981 ACATATGACTATGGAGTTTC-TCGTGTGGAGAGGACCGAAGAAGATGAA 2028 > Ahg899869 jgi|Araly1|899869|Al_scaffold_0004_519 Length=1998 Score = 1609 bits (871), Expect = 0.0 Identities = 1585/1918 (83%), Gaps = 95/1918 (5%) Strand=Plus/Plus Query 190 TGGTACGATGGAGATGCTGGTCCTAGTAGTACTGGTCCAATCAAACGAGAAGCGTCCGAT 249 ||||| |||| |||||||||| || | | |||||| |||||||||||||| | |||||| Sbjct 139 TGGTATGATGAAGATGCTGGT-CT-G-AACACTGGTTCAATCAAACGAGAACCATCCGAT 195 Query 250 AATACTAATGAT-ACAGCACACAACACATTTGCA-CCTCCTCCAGAAATGGTCATACCAC 307 || ||||| | | | | || || ||| ||| || ||||| |||||||| ||| | Sbjct 196 GATGTTAATGGTGA-AACGGACGACTCATCAGCAGCC-CCTCCTCTAATGGTCACACCGC 253 Query 308 TG-ATCACCATTAGGCCAAGTGATGACTCTAGCAACTATTCTTGTGATGCGGGTGCTGGT 366 || | ||||| | ||| ||||||||| | |||| | | || ||||| |||||||||| Sbjct 254 TGCA-AACCATCATACCATCTGATGACTCCAACAACAACTGTTATGATGTGGGTGCTGGT 312 Query 367 CCTAGTACTGGTCCAGTAAAACGAGGCCGTGGCCGACCAAAAGGTTCAAAAAACTCAACG 426 |||||||||| ||||||||| ||||| |||||||||||||| ||||| ||| || Sbjct 313 CCTAGTACTGTTCCAGTAAAGCGAGGGCGTGGCCGACCAAAGGGTTC---AAA---AA-- 364 Query 427 CCGACGGAGCCGAAGAAGCCAAAAGTATATGATCCCAACAGCTTAAAGGT-TACATCTCG 485 | | ||||||||||||||| | |||||||||||||| || ||| | |||| | Sbjct 365 ---A---A-CCGAAGAAGCCAAAAACAGATGATCCCAACAGCAGAATGGTGGA-ATCTTG 416 Query 486 TGGGAATTTCGATTC-AGAGATAACCGAAGCAGAGACAGAAACTGGAAACCAGGAGATAG 544 | |||||| ||||| || |||||| |||| |||| |||||| || || || ||||||| Sbjct 417 TTCGAATTTTGATTCAAG-GATAACTGAAGTGGAGAGAGAAACCGGGAATCAAGAGATAG 475 Query 545 TTGATTCCGTTATGATGCGGTTTGATGCGGTTAGACGACGATTATGCCAAATAAACCATC 604 ||| ||| ||| ||| ||||||||| ||||||||||| |||||||||||| ||||||||| Sbjct 476 TTGGTTCGGTTTTGAAGCGGTTTGACGCGGTTAGACGGCGATTATGCCAACTAAACCATC 535 Query 605 CGGAAGACATCCTTACAAC-G-G-CAAGTGGCAATTGCACGAAAATGGGTGTCAAGACAA 661 | || || |||| ||||| | | ||| | |||||||||||| |||| ||| |||||| Sbjct 536 CAAAACACCTCCTAACAACAGCGTCAACT---AATTGCACGAAATTGGGGGTCCAGACAA 592 Query 662 ATACAAGAAGGAGAATTGGTGCAGTTCCTGGAATACACGTCGGAGATATATTCTATTACT 721 | | || |||||||||||| ||||||||||| |||| || || ||||||||||| |||| Sbjct 593 ACAGGAGGAGGAGAATTGGTCCAGTTCCTGGAGTACAAGTAGGCGATATATTCTACTACT 652 Query 722 GGGGTGAAATGTGCTTAGTGGGGCTTCACAAATCAAA--TTATGGTGGTATTGAtttttt 779 ||||||||||||||||||| || ||||||||| |||| | || || ||||||| | | Sbjct 653 GGGGTGAAATGTGCTTAGTCGGTCTTCACAAA-CAAACGGT-TGCCGGAATTGATTATCT 710 Query 780 tACGGCTGCAGAGAGTGCAGTGGAAGGCCATGCTGCTATGTGTGTGGTAACAGCAGGACA 839 ||||||||||||||||||||||| || || ||||||| ||||||||||||||||| | Sbjct 711 GACGGCTGCAGAGAGTGCAGTGGACGGTCAAGCTGCTACAAGTGTGGTAACAGCAGGA-A 769 Query 840 A-TACGATGGTGAAACCGAGGGGCTTGACACGTTGATCTACAGCGGACAGGGCGGAACGG 898 | ||||||| ||||||||||| ||||||||| |||||||| |||||||| ||| ||| | Sbjct 770 AGTACGATGATGAAACCGAGGAGCTTGACACATTGATCTATAGCGGACACGGCAGAAAAG 829 Query 899 ACGTGTACGGT--AACGCTCGTGATCAAGAGATG-AAGGGCGGGAATCTTGCACTAGAAG 955 | ||| ||| | || | ||||||| | || || | || || ||||| ||||||| Sbjct 830 TCAAGTATGGTCCACCG-T-GTGATCAGGTTTTGCAA-AGAGGAAACCTTGCTCTAGAAG 886 Query 956 CAAGTGTAAGCAA-AGGGAATGACGTTAGAGTCGTGAGAGGAGTGATACATCCTCATGAG 1014 |||||| ||| || ||||||||||||||||||||||||| | | || | | ||| Sbjct 887 CAAGTGAAAG-AAGAGGGAATGACGTTAGAGTCGTGAGACG-G-GA-A-GT--GCAT--- 936 Query 1015 AACAATCAGAAGATATATATCTACGATGGGA-TGTATC-TGGTTTCAAAGTTCTGGACAG 1072 |||||| ||||| |||||||||||||| ||| | || | |||| |||| || ||||| | Sbjct 937 AACAATGAGAAGGTATATATCTACGAT-GGACTTTA-CATGGTATCAAGGTCCTGGATTG 994 Query 1073 TGACAGGAAAATCCGGCTTC-AAGGAGTTCAGATTCAAATTGGTGAGGAAACCAAACCAA 1131 |||||||||||||||| ||| |||||||||| ||||||||||||||||||||| ||||| Sbjct 995 TGACAGGAAAATCCGG-TTCTCAGGAGTTCAGGTTCAAATTGGTGAGGAAACCAGACCAA 1053 Query 1132 CCTCCTGCTTATGCAATCTGGAAAACAGTTGAAAA-TCTGAGGAACCATGACTTGATTGA 1190 ||||||| ||||||||| |||||| ||||||||| | ||||||||||||| | |||||| Sbjct 1054 CCTCCTGGTTATGCAATATGGAAATTAGTTGAAAAGT-TGAGGAACCATGAATCGATTGA 1112 Query 1191 TTCAAG-GCAAGGTTTTATACTTGAAGATCTTTCTTTTGGAGCTGAGCTTTTACGAGTTC 1249 | |||| | | |||||||||||| |||||||||||||||||| |||||||||| ||||| Sbjct 1113 TCCAAGAG-AGGGTTTTATACTTCAAGATCTTTCTTTTGGAGAAGAGCTTTTACCAGTTC 1171 Query 1250 -CGCTCGTTAATGAAGTTGATGAAGATGACAAAACGATTCCCGAAGATTTTGATTACATC 1308 | |||||||||||||| |||||||| |||||||||||||| |||||||| || ||||| Sbjct 1172 AC-CTCGTTAATGAAGTCGATGAAGACGACAAAACGATTCCAGAAGATTTCGAGTACATT 1230 Query 1309 CCCTCTCAGTGTCACTCTGGTATGATGACGCATGAAT-TTCATTTTGATCGTCAATCACT 1367 ||||||||| |||| ||||||| | ||||| || | ||| ||||| ||||| |||| Sbjct 1231 AGATCTCAGTGTTACTCAGGTATGA--A-GCATG-ATCTCCATGTTGATGGTCAAGCACT 1286 Query 1368 TGGATGCCAGAATTGTCGACATCAGCCATGCATG-CATCAAAACTGCACCTGCGTGCAG- 1425 |||||||| ||||| | | | || |||||| | |||||||||||||| ||| || | Sbjct 1287 AGGATGCCATAATTGCCAAGGTGAGTCATGCA-GTCATCAAAACTGCACGTGCATG-GGT 1344 Query 1426 AGAAACGGTGACCTGCTACCGTACCATAACAACATTTTGGTTTGTCGTAAACCATTGATT 1485 | |||||||| || | |||| |||||||| || ||||||||||||||||||||||||||| Sbjct 1345 AAAAACGGTGGCCAGTTACCATACCATAAAAATATTTTGGTTTGTCGTAAACCATTGATT 1404 Query 1486 TACGAGTGCGGTGGATCTTGT-CCTTGCCCCGA-CCATTGCCCAACCCGGTTGGTTCAAA 1543 ||||||||||||| ||||||| || |||||| | | ||||||||| ||| |||||||||| Sbjct 1405 TACGAGTGCGGTGAATCTTGTACC-TGCCCC-ATCGATTGCCCAAACCGATTGGTTCAAA 1462 Query 1544 CCGGTTTGAAACTCCATTTGGAAGTGTTCAAGACAAGAAACTGTGGTTGGGGTTTACGTT 1603 |||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1463 CCGGTTTGAAACTCCACTTGGAAGTGTTCAAGACAACAAACTGTGGTTGGGGTTTACGTT 1522 Query 1604 CTTGGGATCCAATCCGAGCCGGAACTTTTATCTGCGAGTTTGCTGGTTTGAGAAAGACAA 1663 ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||| Sbjct 1523 CTTGGGATCCAATCCGAGCCGGAACTTTTATCTGCGAGTTTGCTGGTGTGAGCAAGGCAA 1582 Query 1664 AAGAAGAAGTAGAAGAGGATGATGATTACTTGTTCGACACGTCAAAGATTTATCAGAGGT 1723 |||||||||||||||||||||| ||||||||||||||||| || ||||||||| | | Sbjct 1583 AAGAAGAAGTAGAAGAGGATGACGATTACTTGTTCGACACATCTCGGATTTATCATACCT 1642 Query 1724 TCAGATGGAACTACGAACCTGAGCTTTTGCTTGAAGATAG-TTGGGAACAAGTCTCTGAA 1782 ||| ||||||||| |||||| ||||||||| ||||||| | || |||| ||||||||| Sbjct 1643 TCATATGGAACTATGAACCTCAGCTTTTGCGTGAAGAT-GCTTCAAAACAGGTCTCTGAA 1701 Query 1783 TTTATCAATCTTCCAACACAAGTCTTGATAAGTGCTAAGGAAAAAGGGAATGTTGGTCGG 1842 ||||||||||||| ||||||||||||||||| || ||||| ||||| |||||||||||| Sbjct 1702 GTTATCAATCTTCCGACACAAGTCTTGATAAGCGCCAAGGAGAAAGGAAATGTTGGTCGG 1761 Query 1843 TTCATGAATCACAGTTGTTCACCGAATGTTTTCTGGCAGCCTATTGAGTATGAAAACAGA 1902 |||||||| || || ||| | ||||||||||| ||||||||||||||||||||||||| | Sbjct 1762 TTCATGAACCAAAGCTGTACGCCGAATGTTTTTTGGCAGCCTATTGAGTATGAAAACA-A 1820 Query 1903 -GGTGATGTA-T-ATCTTCTTATCGGACTTTTTGCTATGAAGCATATTCCTCCGATGACA 1959 |||| | || | || ||| || ||||| ||||| |||||||||||||||||||||||| Sbjct 1821 CGGTG-T-TACTTATGTTCGCATTGGACTCTTTGCGATGAAGCATATTCCTCCGATGACA 1878 Query 1960 GAGTTAACATATGACTATGGAGTTTCATGTGTGGAGAGGAGC-GAAGAAGATGAAGTACT 2018 |||||||||||||||||||||||||| | |||||||| || | | ||||||||||||| | Sbjct 1879 GAGTTAACATATGACTATGGAGTTTCCTTTGTGGAGAAGA-CTGGAGAAGATGAAGTAAT 1937 Query 2019 TCTTTATAAAGGCAAGAAGACCTGTCTCTGTGGTTCAGTCAAATGTCGTGGCTCTTTT 2076 | | ||| ||| ||||| | ||||| |||||||||||| ||||| ||||||||||| Sbjct 1938 T-T--ATAGAGGAAAGAAAATTTGTCTATGTGGTTCAGTCCAATGTTGTGGCTCTTTT 1992 > Ahg344061 jgi|Araly1|344061|fgenesh1_pg.C_scaffold_4000403 Length=1629 Score = 1136 bits (615), Expect = 0.0 Identities = 886/1014 (87%), Gaps = 30/1014 (3%) Strand=Plus/Plus Query 1072 GTGACAGGAAAATCCGGCTTCAAGGAGTTCAGATTCAAATTGGTGAGGAAACCAAACCAA 1131 |||| ||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||| Sbjct 631 GTGATAGGAAAATCTGGCTTTAAGGAGTTCAGATTCAAATTGGTGAGGAAACCAGACCAA 690 Query 1132 CC-TCCTGCTTATGCAATCTGGAAAACAGTTGAAAATCTGAGGAACCATGACTTGATTGA 1190 || | ||| |||||||||||||||| ||||||||| | |||||||||||||||||||||| Sbjct 691 CCAT-CTGGTTATGCAATCTGGAAATCAGTTGAAATTTTGAGGAACCATGACTTGATTGA 749 Query 1191 TTCAAGGCAA-GGTTTTATACTTGAAGATCTTTCTTTTGGAGCTGAGCTTTTACGAGTTC 1249 | ||| | || |||| |||||||| |||||||||||||||||| ||| |||||||||||| Sbjct 750 TCCAA-GAAATGGTTCTATACTTGGAGATCTTTCTTTTGGAGCAGAGGTTTTACGAGTTC 808 Query 1250 CGCTCGTTAATGAAGTTGATGAAGATGACAAAACGATTCCCGAAGATTTTGATTACATCC 1309 |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| Sbjct 809 CGCTCGTTAATGAAGTTGATGAAGATGACAAAACGATTCCTGAAGATTTTGACTACATTA 868 Query 1310 CCTCTCAGTGTCACTCTGGTATGATGACGCATGAAT-TTCATTTTGATCGTCAATCACTT 1368 ||||||||| |||| ||||||||| ||| | || || ||||| |||||||||| Sbjct 869 GATCTCAGTGTTACTCAGGTATGATGTT---TGA-TCTTAATGTTGATATTCAATCACTT 924 Query 1369 GGATGCCAGAATTGTCGACATCA-GCCATGCATGCATCAAAACTGCACCTGCGTGCAG-A 1426 ||||||||||||||| || ||| || | | | |||||||||||| | ||| || | | Sbjct 925 GGATGCCAGAATTGT-GAG-TCATGC-A-G--T-CATCAAAACTGCTCGTGCATGG-GTA 976 Query 1427 GAAACGGTGACCTGCTACCGTACCATAACAACATTTTGGTTTGTCGTAAACCATTGATTT 1486 |||||||| | |||||| |||||||||||||||||||||| ||||||||||||||||| Sbjct 977 AAAACGGTGGCGAGCTACCATACCATAACAACATTTTGGTTTCTCGTAAACCATTGATTT 1036 Query 1487 ACGAGTGCGGTGGATCTTGTCCTTGCCCCGACC-ATTGCCCAACCCGGTTGGTTCAAACC 1545 ||||||| |||||||||||||| |||||| | | ||||||||| ||| |||||||||||| Sbjct 1037 ACGAGTGTGGTGGATCTTGTCCCTGCCCC-ATCGATTGCCCAAACCGATTGGTTCAAACC 1095 Query 1546 GGTTTGAAACTCCATTTGGAAGTGTTCAAGACAAG-AAACTGTGGTTGGGGTTTACGTTC 1604 |||||||| ||||| |||||||||||||| ||| | |||||||||||||||||||||||| Sbjct 1096 GGTTTGAAGCTCCACTTGGAAGTGTTCAAAACA-GCAAACTGTGGTTGGGGTTTACGTTC 1154 Query 1605 TTGGGATCCAATCCGAGCCGGAACTTTTATCTGCGAGTTTGCTGGTTTGAGAAAGACAAA 1664 |||||||||||||||||| ||||||||||||||||||||||| ||| |||| |||||||| Sbjct 1155 TTGGGATCCAATCCGAGCGGGAACTTTTATCTGCGAGTTTGCCGGTGTGAGCAAGACAAA 1214 Query 1665 AGAAGAAGTAGAAGAGGATGATGATTACTTGTTCGACACGTCAAAGATTTATCAGAGGTT 1724 ||||||||||||||||||||| ||||||||||||||||| || ||||||||| | || Sbjct 1215 AGAAGAAGTAGAAGAGGATGACGATTACTTGTTCGACACATCTCGGATTTATCATACCTT 1274 Query 1725 CAGATGGAACTACGAACCTGAGCTTTTGCTTGAAGATAG-TTGGGAACAAGTCTCTGAAT 1783 || ||||||||| |||||| ||||||||| ||||||| | || |||| ||||||||| Sbjct 1275 CATATGGAACTATGAACCTCAGCTTTTGCGTGAAGAT-GCTTCAAAACAGGTCTCTGAAG 1333 Query 1784 TTATCAATCTTCCAACACAAGTCTTGATAAGTGCTAAGGAAAAAGGGAATGTTGGTCGGT 1843 ||||||||||||| |||||||||||||||||||| ||||| ||||| ||||| ||||||| Sbjct 1334 TTATCAATCTTCCGACACAAGTCTTGATAAGTGCCAAGGAGAAAGGAAATGTAGGTCGGT 1393 Query 1844 TCATGAATCACAGTTGTTCACCGAATGTTTTCTGGCAGCCTATTGAGTATGAAAACAGA- 1902 ||||||| ||||| |||| || |||||||| |||||||||||||| |||||||||| | Sbjct 1394 TCATGAACCACAGCTGTTGGCCCAATGTTTTTTGGCAGCCTATTGAATATGAAAACA-AC 1452 Query 1903 GGTGATGTATATCTTCTTATCGGACTTTTTGCTATGAAGCATATTCCTCCGATGACAGAG 1962 |||| | |||| ||| || ||||||||||| ||||||||||||||||| ||||||||| Sbjct 1453 GGTGTTACATATGTTCGCATTGGACTTTTTGCAATGAAGCATATTCCTCCAATGACAGAG 1512 Query 1963 TTAACATATGACTATGGAGTTTCATGTGTGGAGAGGAGCGAAGAAGATGAAGTACTTCTT 2022 ||||||||||||||||||||||| |||||||||| || | ||||||||| | | | ||| Sbjct 1513 TTAACATATGACTATGGAGTTTCTTGTGTGGAGAAGAATGGAGAAGATGA-G-A-TACTT 1569 Query 2023 TATAAAGGCAAGAAGACCTGTCTCTGTGGTTCAGTCAAATGTCGTGGCTCTTTT 2076 |||||||||||||||| ||||| |||||||||||||||||||||||||||||| Sbjct 1570 TATAAAGGCAAGAAGATTTGTCTATGTGGTTCAGTCAAATGTCGTGGCTCTTTT 1623 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 78313543720 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5