BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G17770.1
Length=2082
Score E
Sequences producing significant alignments: (Bits) Value
Ahg312743 jgi|Araly1|312743|fgenesh1_pm.C_scaffold_1001523 2200 0.0
Ahg899869 jgi|Araly1|899869|Al_scaffold_0004_519 1609 0.0
Ahg344061 jgi|Araly1|344061|fgenesh1_pg.C_scaffold_4000403 1136 0.0
> Ahg312743 jgi|Araly1|312743|fgenesh1_pm.C_scaffold_1001523
Length=2937
Score = 2200 bits (1191), Expect = 0.0
Identities = 1680/1909 (88%), Gaps = 61/1909 (3%)
Strand=Plus/Plus
Query 125 CATCTGCAACATCTCCTCTTCTAATGGTCCCACCTCTTCGAACAATCTGGCCATCCAACA 184
|||||||||||||||||| | |||||||| ||||||| ||||| ||||||||||||||||
Sbjct 161 CATCTGCAACATCTCCTCCTATAATGGTCTCACCTCTGCGAACCATCTGGCCATCCAACA 220
Query 185 AGGAATGGTACGATGGAGATGCTGGTCCTAGTAGTACTGGTCCAATCAAACGAGAAGCGT 244
|||| ||||| ||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 221 AGGACTGGTATGATGGAGATGCTGGTCC---TAGTACTGGTCCAATCAAACGAGAACCGT 277
Query 245 CCGATAATACTAATGATACAGCACACAACACATTTGCAC-CTCCTCCAGAAATGGTCA-T 302
|| | | |||| | | | |||||| || |||| | || || |||||||| | |
Sbjct 278 TCG-----A-TGATGA-A-A-CGCACAACTTATCCGCACAC-CCACCTGAAATGGTGACT 327
Query 303 ACCACTGATCACCATTAGGCCAAGTGATGACTCTAGCAACTATTCTTGTGATGCGGGTGC 362
||||||| |||||||||||||| ||||||||||| |||| ||||| |||||||||||
Sbjct 328 -CCACTGAACACCATTAGGCCAATTGATGACTCTAACAACAATTCTAATGATGCGGGTGT 386
Query 363 TGGTCCTAGTACTGGTCCAGTAAAACGAGGCCGTGGCCGACCAAAAGGTTCAAAAAACTC 422
||||| ||| |||| ||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 387 TGGTCTTAGCACTGTTCCAGCAAAACGAGGACGTGGCCGACCAAAAGGTTCAAAAAACTC 446
Query 423 AACGCCGACGGAGCCGAAGAAGCCAAAAGTATATGATCCCAACAGCTTAAAGGTTAC-A- 480
|||| |||| |||| ||||||| ||||||||||||||||||||||||||| |||||| |
Sbjct 447 AACGTCGACCGAGCGGAAGAAGACAAAAGTATATGATCCCAACAGCTTAAGGGTTACAAC 506
Query 481 -TCTCGTGGGAATTTCGATTCAGAGATAACCGAAGCAGAGACAGAAACTGGAAACCAGGA 539
| || ||||||||| ||||||||||||||||| ||||||| ||||| ||||||||| ||
Sbjct 507 TTTTCTTGGGAATTTTGATTCAGAGATAACCGACGCAGAGAGAGAAAATGGAAACCAAGA 566
Query 540 GATAGTTGATTCCGTTATGATGCGGTTTGATGCGGTTAGACGACGATTATGCCAAATAAA 599
| ||| |||||| || |||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 567 GTTAGCTGATTCAGTAATGATGCGGTTTGATGCGGTTAGACGCCGATTATGCCAACTAAA 626
Query 600 CCATCCGGAAGACATCCTTACAACGGC-AAGTGGC-AATTGCACGAAA-ATGGGTGTCAA 656
|| | |||||||||||||| |||||| || | | |||| ||||||| |||| |||||
Sbjct 627 CCCTACGGAAGACATCCTTGTAACGGCTAA-T-ACGAATTTCACGAAATTTGGG-GTCAA 683
Query 657 GACAAATACAAGAAGGAGAATTGGTGCAGTTCCTGGAATACACGTCGGAGATATATTCTA 716
||||||||| ||||||||||| ||| ||||||||||| |||| || ||||||||||||||
Sbjct 684 GACAAATACGAGAAGGAGAATAGGTCCAGTTCCTGGAGTACAAGTAGGAGATATATTCTA 743
Query 717 -TTACTGGGGTGAAATGTGCTTAGTGGGGCTTCACAAATCAAATTAT-GGTGGTATTGAt 774
|| |||||||||||||||||||||||||||||||| | ||||| | || || ||||||
Sbjct 744 CTT-CTGGGGTGAAATGTGCTTAGTGGGGCTTCACAGA-CAAATGGTCGGCGGCATTGAT 801
Query 775 ttttttACGGCTGCAGAGAGTGCAGTGGAAGGCCATGCTGCTATGTGTGTGGTAACAGCA 834
||| | |||||||||||||||| ||||||||| |||||||| | | ||||||| ||||||
Sbjct 802 TTTCTGACGGCTGCAGAGAGTGTAGTGGAAGGTCATGCTGCAACGAGTGTGGTCACAGCA 861
Query 835 GGACAATACGATGGTGAAACCGAGGGGCTTGACA-CGTTGATCTACAGCGGACAGGGCGG 893
||||||||||||| ||||||||| |||||||| | |||||||||| |||||||||| ||
Sbjct 862 GGACAATACGATGATGAAACCGATGGGCTTGA-ATCGTTGATCTATTGCGGACAGGGTGG 920
Query 894 AACGGACGTGTACGGTAACGCTCGTGATCAAGAGATG-AAGGGCGGGAATCTTGCACTAG 952
| ||||| || |||| | | |||||||||| || ||||| || ||||||||||| |
Sbjct 921 ATCGGACAAGTCCGGTCGTGTTTTTGATCAAGAGCTGAAAGGG-GGAAATCTTGCACT-G 978
Query 953 -AAGCAAGTGTAAGCAAAGGGAATGACGTTAGAGTCGTGAGAGGAGTGATACATCCTCAT 1011
|||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |
Sbjct 979 AAAGCAAGTGTAAGCAAAGGGAATGACGTTAGAGTCGTGAGGGGAGTGATGCATCCTTTT 1038
Query 1012 GAGAACAATCAGAAGATATATATCTACGATGGGATGTATCTGGTTTCAAAGTTCTGGACA 1071
|| |||||||||||| |||||||||| |||||||| ||||||||| || ||| |||||||
Sbjct 1039 GACAACAATCAGAAGGTATATATCTATGATGGGATTTATCTGGTTACAGAGTCCTGGACA 1098
Query 1072 GTGACAGGAAAATCCGGCTTCAAGGAGTTCAGATTCAAATTGGTGAGGAAACCAAACCAA 1131
||||||||||||||||| |||| ||||||||||||||||||||| |||||||||||||||
Sbjct 1099 GTGACAGGAAAATCCGGTTTCATGGAGTTCAGATTCAAATTGGTAAGGAAACCAAACCAA 1158
Query 1132 CCTCCTGCTTATGCAATCTGGAAAACAGTTGAAAATCTGAGGAACCATGACTTGATTGAT 1191
||| ||| |||||||||||||||| |||||||||| ||||| || ||||||||||||||
Sbjct 1159 CCTTCTGGTTATGCAATCTGGAAATTAGTTGAAAATTTGAGGGACAATGACTTGATTGAT 1218
Query 1192 TCAAGGCAAGGTTTTATACTT-GAAGATCTTTCTTTTGGAGCTGAGCTTTTACGAGTTCC 1250
||||||| ||||||||| ||| || |||||||||||||||||||||||||||||||||||
Sbjct 1219 TCAAGGCCAGGTTTTATCCTTAGA-GATCTTTCTTTTGGAGCTGAGCTTTTACGAGTTCC 1277
Query 1251 GCTCGTTAATGAAGTTGATGAAGATGACAAAACGATTCCCGAAGATTTTGATTACATCCC 1310
||| ||||||||||| |||||||| |||||||||||||||||||||||||| |||||| |
Sbjct 1278 GCTTGTTAATGAAGTCGATGAAGACGACAAAACGATTCCCGAAGATTTTGACTACATCAC 1337
Query 1311 CTCTCAGTGTCACTCTGGTATGATGACGCATGAATTTCATTTTGATCGTCAATCACTTGG 1370
|||||||||||||||||||||| || | || |||| ||||||||||||
Sbjct 1338 ATCTCAGTGTCACTCTGGTATGA---CG--T---TT-------GATCTTCAATCACTTGG 1382
Query 1371 ATGCCAGAATTGTCGACATCAGCCATGCAT-GCATCAAAACTGCACCTGCGTGCAGAGAA 1429
|||||| |||| || ||||||| ||||||| | |||||||| |||||||| ||||||||
Sbjct 1383 ATGCCAAAATTTTCAACATCAGTCATGCATTG-ATCAAAACAGCACCTGCAAGCAGAGAA 1441
Query 1430 ACGGTGACCTGCTACCGTACCATAACAACATTTTGGTTTGTCGTAAACCATTGATTTACG 1489
|||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1442 ACGGTGGCCTACTACCGTACCATAACAACATTTTGGTTTGTCGTAAACCGTTGATTTACG 1501
Query 1490 AGTGCGGTGGATCTTGTCCTTGCCCCGACCATTGCCCAACCCGGTTGGTTCAAACCGGTT 1549
|||||||||| |||||||| ||||| || ||||||||||| |||||||||||||||| |
Sbjct 1502 AGTGCGGTGGTTCTTGTCCATGCCCTAACAATTGCCCAACCAGGTTGGTTCAAACCGGCT 1561
Query 1550 TGAAACTCCATTTGGAAGTGTTCAAGACAAGAAACTGTGGTTGGGGTTTACGTTCTTGGG 1609
|||||||||| ||||||||||||||||||||||||||||||||||||||| | || ||||
Sbjct 1562 TGAAACTCCAGTTGGAAGTGTTCAAGACAAGAAACTGTGGTTGGGGTTTAAGGTCATGGG 1621
Query 1610 ATCCAATCCGAGCCGGAACTTTTATCTGCGAGTTTGCTGGTTTGAGAAAGAC-A--AAAG 1666
||||||| ||||| |||| |||||||||||||||||| ||| |||||||||| | ||||
Sbjct 1622 ATCCAATTCGAGCTGGAAGTTTTATCTGCGAGTTTGCCGGTGTGAGAAAGACGACGAAAG 1681
Query 1667 AAGAAGTAGAAGAGGATGATGATTACTTGTTCGACACGTCAAAGATTTATCAGAGGTTCA 1726
|||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |
Sbjct 1682 AAGAAGTAGAAGAGGATGATGATTACTTGTTCGACACGTCTAAGATTTATCCCAGGTTTA 1741
Query 1727 GATGGAACTACGAACCTGAGCTTTTGCTTGAAGATAGTTGGGAACAAGTCTCTGAATTTA 1786
||||||||||||||||||||||||||||| |||| ||||||| |||||||| |||||||
Sbjct 1742 AATGGAACTACGAACCTGAGCTTTTGCTTGGAGATTGTTGGGAGCAAGTCTCAGAATTTA 1801
Query 1787 TCAATCTTCCAACACAAGTCTTGATAAGTGCTAAGGAAAAAGGGAATGTTGGTCGGTTCA 1846
|||||||||||||||||||||||||||| || |||||||| || ||||||||||||||||
Sbjct 1802 TCAATCTTCCAACACAAGTCTTGATAAGCGCCAAGGAAAACGGAAATGTTGGTCGGTTCA 1861
Query 1847 TGAATCACAGTTGTTCACCGAATGTTTTCTGGCAGCCTATTGAGTATGAAAACAGA-GGT 1905
|||| ||||| ||||||||||||||||||||||||||||| ||||||||||||| | |||
Sbjct 1862 TGAACCACAGCTGTTCACCGAATGTTTTCTGGCAGCCTATAGAGTATGAAAACA-ACGGT 1920
Query 1906 GATGTATATCTTCTTATCGGACTTTTTGCTATGAAGCATATTCCTCCGATGACAGAGTTA 1965
||| ||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1921 GATATATATATTCTTATTGGACTTTTTGCTATGAAGCATATTCCTCCAATGACAGAGTTA 1980
Query 1966 ACATATGACTATGGAGTTTCAT-GTGTGGAGAGGAGCGAAGAAGATGAA 2013
|||||||||||||||||||| | |||||||||||| |||||||||||||
Sbjct 1981 ACATATGACTATGGAGTTTC-TCGTGTGGAGAGGACCGAAGAAGATGAA 2028
> Ahg899869 jgi|Araly1|899869|Al_scaffold_0004_519
Length=1998
Score = 1609 bits (871), Expect = 0.0
Identities = 1585/1918 (83%), Gaps = 95/1918 (5%)
Strand=Plus/Plus
Query 190 TGGTACGATGGAGATGCTGGTCCTAGTAGTACTGGTCCAATCAAACGAGAAGCGTCCGAT 249
||||| |||| |||||||||| || | | |||||| |||||||||||||| | ||||||
Sbjct 139 TGGTATGATGAAGATGCTGGT-CT-G-AACACTGGTTCAATCAAACGAGAACCATCCGAT 195
Query 250 AATACTAATGAT-ACAGCACACAACACATTTGCA-CCTCCTCCAGAAATGGTCATACCAC 307
|| ||||| | | | | || || ||| ||| || ||||| |||||||| ||| |
Sbjct 196 GATGTTAATGGTGA-AACGGACGACTCATCAGCAGCC-CCTCCTCTAATGGTCACACCGC 253
Query 308 TG-ATCACCATTAGGCCAAGTGATGACTCTAGCAACTATTCTTGTGATGCGGGTGCTGGT 366
|| | ||||| | ||| ||||||||| | |||| | | || ||||| ||||||||||
Sbjct 254 TGCA-AACCATCATACCATCTGATGACTCCAACAACAACTGTTATGATGTGGGTGCTGGT 312
Query 367 CCTAGTACTGGTCCAGTAAAACGAGGCCGTGGCCGACCAAAAGGTTCAAAAAACTCAACG 426
|||||||||| ||||||||| ||||| |||||||||||||| ||||| ||| ||
Sbjct 313 CCTAGTACTGTTCCAGTAAAGCGAGGGCGTGGCCGACCAAAGGGTTC---AAA---AA-- 364
Query 427 CCGACGGAGCCGAAGAAGCCAAAAGTATATGATCCCAACAGCTTAAAGGT-TACATCTCG 485
| | ||||||||||||||| | |||||||||||||| || ||| | |||| |
Sbjct 365 ---A---A-CCGAAGAAGCCAAAAACAGATGATCCCAACAGCAGAATGGTGGA-ATCTTG 416
Query 486 TGGGAATTTCGATTC-AGAGATAACCGAAGCAGAGACAGAAACTGGAAACCAGGAGATAG 544
| |||||| ||||| || |||||| |||| |||| |||||| || || || |||||||
Sbjct 417 TTCGAATTTTGATTCAAG-GATAACTGAAGTGGAGAGAGAAACCGGGAATCAAGAGATAG 475
Query 545 TTGATTCCGTTATGATGCGGTTTGATGCGGTTAGACGACGATTATGCCAAATAAACCATC 604
||| ||| ||| ||| ||||||||| ||||||||||| |||||||||||| |||||||||
Sbjct 476 TTGGTTCGGTTTTGAAGCGGTTTGACGCGGTTAGACGGCGATTATGCCAACTAAACCATC 535
Query 605 CGGAAGACATCCTTACAAC-G-G-CAAGTGGCAATTGCACGAAAATGGGTGTCAAGACAA 661
| || || |||| ||||| | | ||| | |||||||||||| |||| ||| ||||||
Sbjct 536 CAAAACACCTCCTAACAACAGCGTCAACT---AATTGCACGAAATTGGGGGTCCAGACAA 592
Query 662 ATACAAGAAGGAGAATTGGTGCAGTTCCTGGAATACACGTCGGAGATATATTCTATTACT 721
| | || |||||||||||| ||||||||||| |||| || || ||||||||||| ||||
Sbjct 593 ACAGGAGGAGGAGAATTGGTCCAGTTCCTGGAGTACAAGTAGGCGATATATTCTACTACT 652
Query 722 GGGGTGAAATGTGCTTAGTGGGGCTTCACAAATCAAA--TTATGGTGGTATTGAtttttt 779
||||||||||||||||||| || ||||||||| |||| | || || ||||||| | |
Sbjct 653 GGGGTGAAATGTGCTTAGTCGGTCTTCACAAA-CAAACGGT-TGCCGGAATTGATTATCT 710
Query 780 tACGGCTGCAGAGAGTGCAGTGGAAGGCCATGCTGCTATGTGTGTGGTAACAGCAGGACA 839
||||||||||||||||||||||| || || ||||||| ||||||||||||||||| |
Sbjct 711 GACGGCTGCAGAGAGTGCAGTGGACGGTCAAGCTGCTACAAGTGTGGTAACAGCAGGA-A 769
Query 840 A-TACGATGGTGAAACCGAGGGGCTTGACACGTTGATCTACAGCGGACAGGGCGGAACGG 898
| ||||||| ||||||||||| ||||||||| |||||||| |||||||| ||| ||| |
Sbjct 770 AGTACGATGATGAAACCGAGGAGCTTGACACATTGATCTATAGCGGACACGGCAGAAAAG 829
Query 899 ACGTGTACGGT--AACGCTCGTGATCAAGAGATG-AAGGGCGGGAATCTTGCACTAGAAG 955
| ||| ||| | || | ||||||| | || || | || || ||||| |||||||
Sbjct 830 TCAAGTATGGTCCACCG-T-GTGATCAGGTTTTGCAA-AGAGGAAACCTTGCTCTAGAAG 886
Query 956 CAAGTGTAAGCAA-AGGGAATGACGTTAGAGTCGTGAGAGGAGTGATACATCCTCATGAG 1014
|||||| ||| || ||||||||||||||||||||||||| | | || | | |||
Sbjct 887 CAAGTGAAAG-AAGAGGGAATGACGTTAGAGTCGTGAGACG-G-GA-A-GT--GCAT--- 936
Query 1015 AACAATCAGAAGATATATATCTACGATGGGA-TGTATC-TGGTTTCAAAGTTCTGGACAG 1072
|||||| ||||| |||||||||||||| ||| | || | |||| |||| || ||||| |
Sbjct 937 AACAATGAGAAGGTATATATCTACGAT-GGACTTTA-CATGGTATCAAGGTCCTGGATTG 994
Query 1073 TGACAGGAAAATCCGGCTTC-AAGGAGTTCAGATTCAAATTGGTGAGGAAACCAAACCAA 1131
|||||||||||||||| ||| |||||||||| ||||||||||||||||||||| |||||
Sbjct 995 TGACAGGAAAATCCGG-TTCTCAGGAGTTCAGGTTCAAATTGGTGAGGAAACCAGACCAA 1053
Query 1132 CCTCCTGCTTATGCAATCTGGAAAACAGTTGAAAA-TCTGAGGAACCATGACTTGATTGA 1190
||||||| ||||||||| |||||| ||||||||| | ||||||||||||| | ||||||
Sbjct 1054 CCTCCTGGTTATGCAATATGGAAATTAGTTGAAAAGT-TGAGGAACCATGAATCGATTGA 1112
Query 1191 TTCAAG-GCAAGGTTTTATACTTGAAGATCTTTCTTTTGGAGCTGAGCTTTTACGAGTTC 1249
| |||| | | |||||||||||| |||||||||||||||||| |||||||||| |||||
Sbjct 1113 TCCAAGAG-AGGGTTTTATACTTCAAGATCTTTCTTTTGGAGAAGAGCTTTTACCAGTTC 1171
Query 1250 -CGCTCGTTAATGAAGTTGATGAAGATGACAAAACGATTCCCGAAGATTTTGATTACATC 1308
| |||||||||||||| |||||||| |||||||||||||| |||||||| || |||||
Sbjct 1172 AC-CTCGTTAATGAAGTCGATGAAGACGACAAAACGATTCCAGAAGATTTCGAGTACATT 1230
Query 1309 CCCTCTCAGTGTCACTCTGGTATGATGACGCATGAAT-TTCATTTTGATCGTCAATCACT 1367
||||||||| |||| ||||||| | ||||| || | ||| ||||| ||||| ||||
Sbjct 1231 AGATCTCAGTGTTACTCAGGTATGA--A-GCATG-ATCTCCATGTTGATGGTCAAGCACT 1286
Query 1368 TGGATGCCAGAATTGTCGACATCAGCCATGCATG-CATCAAAACTGCACCTGCGTGCAG- 1425
|||||||| ||||| | | | || |||||| | |||||||||||||| ||| || |
Sbjct 1287 AGGATGCCATAATTGCCAAGGTGAGTCATGCA-GTCATCAAAACTGCACGTGCATG-GGT 1344
Query 1426 AGAAACGGTGACCTGCTACCGTACCATAACAACATTTTGGTTTGTCGTAAACCATTGATT 1485
| |||||||| || | |||| |||||||| || |||||||||||||||||||||||||||
Sbjct 1345 AAAAACGGTGGCCAGTTACCATACCATAAAAATATTTTGGTTTGTCGTAAACCATTGATT 1404
Query 1486 TACGAGTGCGGTGGATCTTGT-CCTTGCCCCGA-CCATTGCCCAACCCGGTTGGTTCAAA 1543
||||||||||||| ||||||| || |||||| | | ||||||||| ||| ||||||||||
Sbjct 1405 TACGAGTGCGGTGAATCTTGTACC-TGCCCC-ATCGATTGCCCAAACCGATTGGTTCAAA 1462
Query 1544 CCGGTTTGAAACTCCATTTGGAAGTGTTCAAGACAAGAAACTGTGGTTGGGGTTTACGTT 1603
|||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1463 CCGGTTTGAAACTCCACTTGGAAGTGTTCAAGACAACAAACTGTGGTTGGGGTTTACGTT 1522
Query 1604 CTTGGGATCCAATCCGAGCCGGAACTTTTATCTGCGAGTTTGCTGGTTTGAGAAAGACAA 1663
||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||
Sbjct 1523 CTTGGGATCCAATCCGAGCCGGAACTTTTATCTGCGAGTTTGCTGGTGTGAGCAAGGCAA 1582
Query 1664 AAGAAGAAGTAGAAGAGGATGATGATTACTTGTTCGACACGTCAAAGATTTATCAGAGGT 1723
|||||||||||||||||||||| ||||||||||||||||| || ||||||||| | |
Sbjct 1583 AAGAAGAAGTAGAAGAGGATGACGATTACTTGTTCGACACATCTCGGATTTATCATACCT 1642
Query 1724 TCAGATGGAACTACGAACCTGAGCTTTTGCTTGAAGATAG-TTGGGAACAAGTCTCTGAA 1782
||| ||||||||| |||||| ||||||||| ||||||| | || |||| |||||||||
Sbjct 1643 TCATATGGAACTATGAACCTCAGCTTTTGCGTGAAGAT-GCTTCAAAACAGGTCTCTGAA 1701
Query 1783 TTTATCAATCTTCCAACACAAGTCTTGATAAGTGCTAAGGAAAAAGGGAATGTTGGTCGG 1842
||||||||||||| ||||||||||||||||| || ||||| ||||| ||||||||||||
Sbjct 1702 GTTATCAATCTTCCGACACAAGTCTTGATAAGCGCCAAGGAGAAAGGAAATGTTGGTCGG 1761
Query 1843 TTCATGAATCACAGTTGTTCACCGAATGTTTTCTGGCAGCCTATTGAGTATGAAAACAGA 1902
|||||||| || || ||| | ||||||||||| ||||||||||||||||||||||||| |
Sbjct 1762 TTCATGAACCAAAGCTGTACGCCGAATGTTTTTTGGCAGCCTATTGAGTATGAAAACA-A 1820
Query 1903 -GGTGATGTA-T-ATCTTCTTATCGGACTTTTTGCTATGAAGCATATTCCTCCGATGACA 1959
|||| | || | || ||| || ||||| ||||| ||||||||||||||||||||||||
Sbjct 1821 CGGTG-T-TACTTATGTTCGCATTGGACTCTTTGCGATGAAGCATATTCCTCCGATGACA 1878
Query 1960 GAGTTAACATATGACTATGGAGTTTCATGTGTGGAGAGGAGC-GAAGAAGATGAAGTACT 2018
|||||||||||||||||||||||||| | |||||||| || | | ||||||||||||| |
Sbjct 1879 GAGTTAACATATGACTATGGAGTTTCCTTTGTGGAGAAGA-CTGGAGAAGATGAAGTAAT 1937
Query 2019 TCTTTATAAAGGCAAGAAGACCTGTCTCTGTGGTTCAGTCAAATGTCGTGGCTCTTTT 2076
| | ||| ||| ||||| | ||||| |||||||||||| ||||| |||||||||||
Sbjct 1938 T-T--ATAGAGGAAAGAAAATTTGTCTATGTGGTTCAGTCCAATGTTGTGGCTCTTTT 1992
> Ahg344061 jgi|Araly1|344061|fgenesh1_pg.C_scaffold_4000403
Length=1629
Score = 1136 bits (615), Expect = 0.0
Identities = 886/1014 (87%), Gaps = 30/1014 (3%)
Strand=Plus/Plus
Query 1072 GTGACAGGAAAATCCGGCTTCAAGGAGTTCAGATTCAAATTGGTGAGGAAACCAAACCAA 1131
|||| ||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 631 GTGATAGGAAAATCTGGCTTTAAGGAGTTCAGATTCAAATTGGTGAGGAAACCAGACCAA 690
Query 1132 CC-TCCTGCTTATGCAATCTGGAAAACAGTTGAAAATCTGAGGAACCATGACTTGATTGA 1190
|| | ||| |||||||||||||||| ||||||||| | ||||||||||||||||||||||
Sbjct 691 CCAT-CTGGTTATGCAATCTGGAAATCAGTTGAAATTTTGAGGAACCATGACTTGATTGA 749
Query 1191 TTCAAGGCAA-GGTTTTATACTTGAAGATCTTTCTTTTGGAGCTGAGCTTTTACGAGTTC 1249
| ||| | || |||| |||||||| |||||||||||||||||| ||| ||||||||||||
Sbjct 750 TCCAA-GAAATGGTTCTATACTTGGAGATCTTTCTTTTGGAGCAGAGGTTTTACGAGTTC 808
Query 1250 CGCTCGTTAATGAAGTTGATGAAGATGACAAAACGATTCCCGAAGATTTTGATTACATCC 1309
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 809 CGCTCGTTAATGAAGTTGATGAAGATGACAAAACGATTCCTGAAGATTTTGACTACATTA 868
Query 1310 CCTCTCAGTGTCACTCTGGTATGATGACGCATGAAT-TTCATTTTGATCGTCAATCACTT 1368
||||||||| |||| ||||||||| ||| | || || ||||| ||||||||||
Sbjct 869 GATCTCAGTGTTACTCAGGTATGATGTT---TGA-TCTTAATGTTGATATTCAATCACTT 924
Query 1369 GGATGCCAGAATTGTCGACATCA-GCCATGCATGCATCAAAACTGCACCTGCGTGCAG-A 1426
||||||||||||||| || ||| || | | | |||||||||||| | ||| || | |
Sbjct 925 GGATGCCAGAATTGT-GAG-TCATGC-A-G--T-CATCAAAACTGCTCGTGCATGG-GTA 976
Query 1427 GAAACGGTGACCTGCTACCGTACCATAACAACATTTTGGTTTGTCGTAAACCATTGATTT 1486
|||||||| | |||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct 977 AAAACGGTGGCGAGCTACCATACCATAACAACATTTTGGTTTCTCGTAAACCATTGATTT 1036
Query 1487 ACGAGTGCGGTGGATCTTGTCCTTGCCCCGACC-ATTGCCCAACCCGGTTGGTTCAAACC 1545
||||||| |||||||||||||| |||||| | | ||||||||| ||| ||||||||||||
Sbjct 1037 ACGAGTGTGGTGGATCTTGTCCCTGCCCC-ATCGATTGCCCAAACCGATTGGTTCAAACC 1095
Query 1546 GGTTTGAAACTCCATTTGGAAGTGTTCAAGACAAG-AAACTGTGGTTGGGGTTTACGTTC 1604
|||||||| ||||| |||||||||||||| ||| | ||||||||||||||||||||||||
Sbjct 1096 GGTTTGAAGCTCCACTTGGAAGTGTTCAAAACA-GCAAACTGTGGTTGGGGTTTACGTTC 1154
Query 1605 TTGGGATCCAATCCGAGCCGGAACTTTTATCTGCGAGTTTGCTGGTTTGAGAAAGACAAA 1664
|||||||||||||||||| ||||||||||||||||||||||| ||| |||| ||||||||
Sbjct 1155 TTGGGATCCAATCCGAGCGGGAACTTTTATCTGCGAGTTTGCCGGTGTGAGCAAGACAAA 1214
Query 1665 AGAAGAAGTAGAAGAGGATGATGATTACTTGTTCGACACGTCAAAGATTTATCAGAGGTT 1724
||||||||||||||||||||| ||||||||||||||||| || ||||||||| | ||
Sbjct 1215 AGAAGAAGTAGAAGAGGATGACGATTACTTGTTCGACACATCTCGGATTTATCATACCTT 1274
Query 1725 CAGATGGAACTACGAACCTGAGCTTTTGCTTGAAGATAG-TTGGGAACAAGTCTCTGAAT 1783
|| ||||||||| |||||| ||||||||| ||||||| | || |||| |||||||||
Sbjct 1275 CATATGGAACTATGAACCTCAGCTTTTGCGTGAAGAT-GCTTCAAAACAGGTCTCTGAAG 1333
Query 1784 TTATCAATCTTCCAACACAAGTCTTGATAAGTGCTAAGGAAAAAGGGAATGTTGGTCGGT 1843
||||||||||||| |||||||||||||||||||| ||||| ||||| ||||| |||||||
Sbjct 1334 TTATCAATCTTCCGACACAAGTCTTGATAAGTGCCAAGGAGAAAGGAAATGTAGGTCGGT 1393
Query 1844 TCATGAATCACAGTTGTTCACCGAATGTTTTCTGGCAGCCTATTGAGTATGAAAACAGA- 1902
||||||| ||||| |||| || |||||||| |||||||||||||| |||||||||| |
Sbjct 1394 TCATGAACCACAGCTGTTGGCCCAATGTTTTTTGGCAGCCTATTGAATATGAAAACA-AC 1452
Query 1903 GGTGATGTATATCTTCTTATCGGACTTTTTGCTATGAAGCATATTCCTCCGATGACAGAG 1962
|||| | |||| ||| || ||||||||||| ||||||||||||||||| |||||||||
Sbjct 1453 GGTGTTACATATGTTCGCATTGGACTTTTTGCAATGAAGCATATTCCTCCAATGACAGAG 1512
Query 1963 TTAACATATGACTATGGAGTTTCATGTGTGGAGAGGAGCGAAGAAGATGAAGTACTTCTT 2022
||||||||||||||||||||||| |||||||||| || | ||||||||| | | | |||
Sbjct 1513 TTAACATATGACTATGGAGTTTCTTGTGTGGAGAAGAATGGAGAAGATGA-G-A-TACTT 1569
Query 2023 TATAAAGGCAAGAAGACCTGTCTCTGTGGTTCAGTCAAATGTCGTGGCTCTTTT 2076
|||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1570 TATAAAGGCAAGAAGATTTGTCTATGTGGTTCAGTCAAATGTCGTGGCTCTTTT 1623
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78313543720
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5