BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G17790.1
Length=1768
Score E
Sequences producing significant alignments: (Bits) Value
Ahg312744 jgi|Araly1|312744|fgenesh1_pm.C_scaffold_1001524 2224 0.0
Ahg316265 jgi|Araly1|316265|fgenesh1_pm.C_scaffold_2001298 403 2e-111
> Ahg312744 jgi|Araly1|312744|fgenesh1_pm.C_scaffold_1001524
Length=1449
Score = 2224 bits (1204), Expect = 0.0
Identities = 1391/1475 (94%), Gaps = 37/1475 (3%)
Strand=Plus/Plus
Query 129 ATGTCTTCTGAACATATATCAGGTGGTGGAGCTTCAAAGACGAAGAAACATAAGTGGAGC 188
||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 1 ATGTCTTCTGACCATATATCAGGTGGTGGAGCTTCGAAGACGAAGAAGCATAAGTGGAGC 60
Query 189 TCAAGCCAGAACCGACCCAAACCAATGG-GAGTTTCTAGACAGGAACGATCTGTTCCTCT 247
||||||||||||||| |||||||||||| | ||||||||| | || ||||| ||||||||
Sbjct 61 TCAAGCCAGAACCGAACCAAACCAATGGTG-GTTTCTAGAAACGAGCGATCGGTTCCTCT 119
Query 248 TGTATCTCCTTCGAACTCGTTTGCGTCGGAGGACGATCATCACATGTTGAAGATAAGTCT 307
|||||||||||||| | ||||||||||||||||||||||| |||||||||||
Sbjct 120 GGTATCTCCTTCGAA--------C-TCGGAGGACGATCATCACATGTTAAAGATAAGTCT 170
Query 308 GAGCTCGATTTCGAAGCTTGAGGTTAGGAACTTGAAGCGGAAACTAAAATCTGAGCTTGA 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 171 GAGCTCGATTTCGAAGCTTGAGGTTAGGAACTTGAAGCGGAAACTAAAATCTGAGCTAGA 230
Query 368 TGAGGTTAGGAGCTTGATCAAACGGTTCGATCCCGAAGCTAATC---CTGG------TGG 418
|||||||||||||||||||||||||||||||||||||| ||||| ||| |||
Sbjct 231 TGAGGTTAGGAGCTTGATCAAACGGTTCGATCCCGAAGTTAATCTTGGTGGAAATATTGG 290
Query 419 GTCAATGGCTAAAAGTGGTGTTGTAGGGAGAAGCAAGAAGGTGAAAACAGGGAATGGAGG 478
|||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 291 GTCAATGGCTAAAACTGGTGTTGTAGGGAGAAACAAGAAGCTGAAAACAGGGAATGGAGG 350
Query 479 AGGTAAGAAAAGTGGGCATGGAGCTGATAAAGGTACGGTTCAGATTTTTAAGAACTGTAA 538
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 351 AGGTAAGAAAAGTGGGCATGGAGCTGATAAAGGTACGGTTCAGATTTTCAAGAACTGTAA 410
Query 539 CAGTTTGCTTACGAAATTGATGAAGCATAAGAGTGCATGGGTATTCAATGTCCCTGTGGA 598
||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||
Sbjct 411 CAGTTTGCTTACGAAATTGATGAAGCATAAGTGTGCATGGGTATTCCATGTCCCAGTGGA 470
Query 599 TGCTAAAGGACTTGGCTTGCATGATTATCACAATATTGTTAAAGAGCCTATGGATTTGGG 658
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 471 TGCTGAAGGACTTGGCTTGCATGATTATCACAATATTGTTAAAGAGCCTATGGATTTGGG 530
Query 659 TACAGTGAAGACTAAGTTGGGGAAAAGTTTGTATAAGTCGCCATTGGATTTCGCTGAAGA 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 531 TACAGTGAAGACTAAGTTGGGGAAAAGTTTGTATAAGTCGCCATTGGATTTCGCTGAAGA 590
Query 719 TGTTAGACTTACTTTTAACAATGCGATTTTGTATAATCCGATTGGGCATGATGTGTATCG 778
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 591 TGTTAGACTTACTTTTAACAATGCGATTTTGTATAATCCGGTTGGGCATGATGTGCATCG 650
Query 779 TTTTGCTGAGCTTTTGTTGAACATGTTTGAAGATAAATGGGTATCCATTGAAATGCAGTA 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 651 TTTTGCTGAGCTTTTGTTGAACATGTTTGAAGATAAATGGGTATCCATTGAAATGCAGTA 710
Query 839 TGATAATCTTCATAGGAAGTTCAAACCAACTCGTGATATTGAGTTCCCTGCTCCTGCTCC 898
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 711 TGATAATCTTCATAGGAAGTTCAAACCAACTCGTGATATTGAGTTCCCTGCTCCTGCTTC 770
Query 899 ATCCATTGCTCCTATTGTAGAGCCATTACCTGCCATTGTTCCTTCACCATCCCCGTCTTC 958
| |||||||||||||||||||||||||||| || | |||||| ||||| || || |
Sbjct 771 AACCATTGCTCCTATTGTAGAGCCATTACCAGC-A--GTTCCTACACCA-CCT--TC--C 822
Query 959 TCC-TCCTCCTCCTCCACCGCCACCAGTAGCAGCTCCGGTACTTGAAAATAGGACTTGGG 1017
|| || |||||||||||| |||| | | | |||||||||||||||||||||||||||
Sbjct 823 -CCGTC-TCCTCCTCCACCACCAC-A--A-C--CTCCGGTACTTGAAAATAGGACTTGGG 874
Query 1018 AGAGAGAAGAATCTATGACAATCCCTGTGGAACCTGAAGCTGTAATTACTGCTCCAGAGA 1077
||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| || |
Sbjct 875 AGAGAGAAGAATCTATGACAATCCCAGTGGAACCTGAAGCTGTAACTACTGCTCCCGACA 934
Query 1078 AAGCTGAAGAAGAGGAAGCACCTGTTAACAACAGGGACCTCACCTTGGAAGAGAAACGGA 1137
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 935 AAGCTGAAGAAGAGGAAGCACCTGTTAACAACAGGGACCTCACTTTGGAAGAGAAACGGA 994
Query 1138 GACTCAGTGAAGAGCTTCAAGACTTGCCTTATGACAAACTAGAGACTGTTGTTCAGATCA 1197
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 995 GACTCAGTGAAGAGCTTCAGGACTTGCCTTATGACAAACTAGAGACTGTTGTTCAGATCA 1054
Query 1198 TAAAGAAGAGCAATCCAGAGCTCTCTCAAAAAGATGATGAGATTGAGCTGGATATTGATA 1257
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1055 TAAAGAAGAGCAATCCAGAGCTCTCTCAACAAGATGATGAGATTGAGCTGGATATTGATA 1114
Query 1258 GTCTTGATATCAACACGCTTTGGGAGCTTTATAGATTTGTGACTGGGTATAAGGAGAGCT 1317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1115 GTCTTGATATCAACACGCTTTGGGAGCTTTATAGATTTGTGACTGGGTATAAGGAGAGCT 1174
Query 1318 TGAGCAAGAAAAACGAGGCTCATGGATTTGGTTCAGAAAGAGATGCTGAATCTGTTCACA 1377
||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1175 TGAGCAAGAAAAACGTGGCTCAGGGATTTGGTTCAGAAAGAGATGCTGAATCTGTTCACA 1234
Query 1378 ATAGTATTCAAGAACCTACCACTTTAGTAAGTGGCACCACAACATCGAGAGTTACTGAAT 1437
|||||||||||||||| |||||| |||||| |||||||| ||||||||||||||||||||
Sbjct 1235 ATAGTATTCAAGAACCAACCACTCTAGTAACTGGCACCAAAACATCGAGAGTTACTGAAT 1294
Query 1438 CAGGAAAAGCAATTCGCACATCATCTCCTGCTCGGCAAGAAAACAATGCAAGTGGATCAA 1497
|||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1295 CAGGAAAAGCAATTCGTACATCATCTCCTGGTCGGCAAGAAAACAATGCAAGTGGATCAA 1354
Query 1498 GTAGTTCTAACAGTTCTAGTAGTGACTCAGGATCTTGCTCTAGTGATACTGACAGTGACA 1557
||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 1355 GTAGTTCTAACAGTTCTAGTAGTGACTCAGGATCTTGCTCTAGTGATTCTGATAGTGACA 1414
Query 1558 GCTCTTCAGGACGTGGATCAGATAATGGTAATTAG 1592
|||| ||||||||||||||||||||||||||||||
Sbjct 1415 GCTCCTCAGGACGTGGATCAGATAATGGTAATTAG 1449
> Ahg316265 jgi|Araly1|316265|fgenesh1_pm.C_scaffold_2001298
Length=1350
Score = 403 bits (218), Expect = 2e-111
Identities = 480/603 (80%), Gaps = 32/603 (5%)
Strand=Plus/Plus
Query 996 GTACTTGAAAATAGGACTTGGGAGAGAGAAGAATCTATGACAATCCCTGTGGAACCTGAA 1055
||| ||||||||||||||| |||||||| |||||||||||||| ||| ||| |||||| |
Sbjct 772 GTAGTTGAAAATAGGACTTTGGAGAGAGCAGAATCTATGACAAACCCAGTGAAACCTGCA 831
Query 1056 GCTGTAATTACTGCT-CCAGAGAAAG-CTGAAGAAGAGGAAGCACCTGTTAACAACAGGG 1113
| | || || | || ||| ||| ||| |||| | | || ||| | |||||||
Sbjct 832 GTTCTACCGGTTG-TCCCTGAG-AAGCCTGTAGAA-A--ACGCGTCTG--CA-AACAGGG 883
Query 1114 ACCTCACCTTGGAAGAGAAACGGAGACTCAGTGAAGAGCTTCAAGACTTGCCTTATGACA 1173
|| | || || || ||||| |||||||| |||||||| ||||| || || ||||||||||
Sbjct 884 ACTTGACGTTTGATGAGAAGCGGAGACTTAGTGAAGACCTTCAGGATTTACCTTATGACA 943
Query 1174 AACTAGAGACTGTTGTTCAGATCATAAAGAAGAGCAATCCAGAGCTCTCTCAAAAAGATG 1233
| |||||| | ||||| ||||| ||||||||||| |||||||| ||||||||| ||||||
Sbjct 944 AGCTAGAGGCAGTTGTGCAGATTATAAAGAAGAGTAATCCAGAACTCTCTCAACAAGATG 1003
Query 1234 ATGAGATTGAGCTGGATATTGATAGTCTTGATAT-CAACACGCTTTGGGAGCTTTATAGA 1292
||||||||||| | |||||||||||||||||| | || || |||||||||||||| |||
Sbjct 1004 ATGAGATTGAGTTAGATATTGATAGTCTTGATCTGGAA-ACACTTTGGGAGCTTTACAGA 1062
Query 1293 TTTGTGACTGGGTATAAGGAGAGCTTGAGCAAGAAAAACGAGGCTCATGGATTTGGTTCA 1352
|| ||||||| ||||||||||||| |||||||||||| |||| |||||||| | |||
Sbjct 1063 TTCGTGACTGAATATAAGGAGAGCTCGAGCAAGAAAAAAGAGGAACATGGATTAGACTCA 1122
Query 1353 GAAAGAGATGCTGAATC-TGTTCACAATAGTATTCAAGAACCTACCACTTTAGTAAGTGG 1411
||||||||||||||||| || |||||||||| | |||||||| | ||| |||||| |||
Sbjct 1123 GAAAGAGATGCTGAATCTTG-TCACAATAGTGTGCAAGAACCGAACACGCTAGTAACTGG 1181
Query 1412 CACCACAA-CATCGAGAGTTACTGAATCAGGAAAAGCAATTCGCACATCATCTCCTGCTC 1470
| | || | || | ||||||||||| ||| | | | | ||||||||| ||
Sbjct 1182 C-CTTGAATCGTCAAAAGTTACTGAATTAGG----TC-A-T-G--TGGCATCTCCTGTTC 1231
Query 1471 GGCAAGAA-AACAATGCAAGTGGATCAAGTAGTTCTAACAGTTCTAGTAGTGACTCAGGA 1529
| |||||| | |||| | ||||||||||||||||||||||||||||||| ||||||
Sbjct 1232 GACAAGAAGTA-AATGTTGGAGGATCAAGTAGTTCTAACAGTTCTAGTAGTGGCTCAGGC 1290
Query 1530 TCTTGCTCTAGTGATACTGACAGTGACAGCTCTTCAGGACGTGGATCAGATAAT-GGTAA 1588
|| | ||||||||| | |||||||| ||||| ||| | |||||| |||| | |||||
Sbjct 1291 TCGGGTTCTAGTGATTCCGACAGTGATAGCTC---AGGGCATGGATCTGATA-TCGGTAA 1346
Query 1589 TTA 1591
|||
Sbjct 1347 TTA 1349
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66353206790
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5