BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G17800.1

Length=545
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg471993 jgi|Araly1|471993|fgenesh2_kg.1__1947__AT1G17800.1         721    0.0  


> Ahg471993 jgi|Araly1|471993|fgenesh2_kg.1__1947__AT1G17800.1
Length=505

 Score =  721 bits (390),  Expect = 0.0
 Identities = 439/463 (95%), Gaps = 2/463 (0%)
 Strand=Plus/Plus

Query  3    CAAATGGCTCAATCATCTGGACACGTTTCTTATGTGGCGGTTACGGTTCCAATAGCTATT  62
            |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct  1    CAAATGGCTCAATCATCTGGACACGTTTCTTATGTGGCGGCTACGGTTCCAATAACTATT  60

Query  63   GTCATGACAGTGTTGTGCTTGTTTCTAGCCAACGCCGTGACCTATGCCCGGAGACCGACC  122
            | |||||||||||||||| |||||||||||||||| |||||||| |||||||||||||||
Sbjct  61   GCCATGACAGTGTTGTGCATGTTTCTAGCCAACGCAGTGACCTACGCCCGGAGACCGACC  120

Query  123  ACCTACATTGTGGGAGGCGACGATGGTTGGGATCCGGTTGTTCCGATGGACACTTGGGCA  182
            |||||| |||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct  121  ACCTACTTTGTGGGAGGCGACGACGGTTGGGACCCGGTTGTTCCGATGGACACTTGGGCA  180

Query  183  CGAGGCAAAACCTTTTATGCTGGTGATATTCTCGAATTCAAATACGATTATCAGAGATTT  242
            ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct  181  CGAGGCAAAACCTTTTATGCTGGTGATATCCTCGAATTCAAATACGATGATCAGAGATTT  240

Query  243  AATTTGATTGTGGTAAACCGAACTGGTTATGAAACTTGTGAAGCGAACGTTGGAGCGATA  302
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  241  AATTTGATTGTGGTAAACCGAACTGGTTATGAAACTTGTGAAGCGAACGTTGGAGCGATA  300

Query  303  GAATATTCGTCCGGAGACGATAAGATCCAGCTTAATTACGGTTATAATTATTTCATCGGA  362
            || |||||||||||||||||||||||||| ||| |||| ||||||||||||||||| |||
Sbjct  301  GAGTATTCGTCCGGAGACGATAAGATCCAACTTCATTATGGTTATAATTATTTCATTGGA  360

Query  363  ACATATACTCCCGAGGATTGTACCACCGGTTTAAAAATGGCCATCAAAGCATTGGCTCC-  421
            ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| 
Sbjct  361  ACATATACTCCCGAGGATTGTTCCACCGGTTTAAAGATGGCCATCAAAGCATTGGCTCCC  420

Query  422  AAGATAAATTAAATGAAGCAACTTATTATAACAATGATAAGTG  464
            || |||||||||||||||||||| | ||| | |||||||||||
Sbjct  421  AA-ATAAATTAAATGAAGCAACTAACTATTATAATGATAAGTG  462



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19879061869


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5