BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G17810.1
Length=1173
Score E
Sequences producing significant alignments: (Bits) Value
Ahg920704 jgi|Araly1|920704|scaffold_101985.1 1363 0.0
> Ahg920704 jgi|Araly1|920704|scaffold_101985.1
Length=852
Score = 1363 bits (738), Expect = 0.0
Identities = 804/837 (96%), Gaps = 0/837 (0%)
Strand=Plus/Plus
Query 161 CTCTCACTTAAATTAGGGTTATATATGGCTACATCTGCTAGAAGAGCATATGGATTCGGG 220
||||||||||||||||| ||||| |||||||||||| ||||||||||||||||||||||
Sbjct 1 CTCTCACTTAAATTAGGTTTATAAATGGCTACATCTACTAGAAGAGCATATGGATTCGGA 60
Query 221 AGAGCTGACGAGGCGACTCACCCGGACTCCATTAGAGCCACTTTGGCTGAGTTTCTTTCC 280
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 61 AGAGCTGACGAGGCGACTCACCCGGACTCCATTCGAGCCACTTTGGCTGAGTTTCTTTCC 120
Query 281 ACGTTCGTCTTCGTCTTTGCTGGAGAAGGCTCAATCCTCGCTCTAGACAAGTTGTATTGG 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ACGTTCGTCTTCGTCTTTGCTGGAGAAGGCTCAATCCTCGCTCTAGACAAGTTGTATTGG 180
Query 341 GACACGGCGGCTCACACGGGGACAAACACGCCTGGAGGGTTAGTTCTGGTGGCGTTAGCT 400
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 181 GACACGGCGGCTCACACGGGGACAAACACGCCGGGAGGGTTAGTTCTGGTGGCGTTAGCT 240
Query 401 CATGCATTGGCCTTGTTCGCGGCTGTTTCTGCAGCCATCAATGTCTCTGGTGGCCACGTC 460
||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||
Sbjct 241 CATGCATTGGCCTTGTTTGCGGCTGTTTCGGCGGCCATCAATGTCTCTGGTGGCCACGTG 300
Query 461 AACCCCGCTGTCACTTTTGCTGCTCTAATCGGAGGCAGGATCTCGGTCATTCGAGCTATC 520
||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 301 AACCCTGCTGTCACTTTTGCTGCTCTAATCGGAGGCAGGATCTCGGTGATCCGAGCTATC 360
Query 521 TACTATTGGGTTGCTCAGCTTATAGGTGCTATCCTCGCTTGTCTCTTGTTGAGGCTTGCC 580
||||||||| ||||||||||| | ||||| ||| |||||||||||||||||||||||||
Sbjct 361 TACTATTGGATTGCTCAGCTTCTTGGTGCCATCATCGCTTGTCTCTTGTTGAGGCTTGCT 420
Query 581 ACTAATGGCTTGAGACCAGTAGGTTTCCATGTAGCATCAGGAGTTAGTGAGCTTCATGGG 640
|| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 421 ACCAATGGCTTGAGACCAATAGGTTTCCATGTAGCATCAGGAGTTAGTGAGCTTCATGGG 480
Query 641 CTACTGATGGAGATCATACTTACATTTGCTTTGGTTTATGTTGTCTACTCGACCGCAATC 700
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CTAGTGATGGAGATCATACTTACATTTGCTTTGGTTTATGTTGTCTACTCGACCGCAATC 540
Query 701 GATCCAAAGAGGGGGAGTATTGGGATCATAGCGCCACTAGCCATCGGGCTCATAGTTGGG 760
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 541 GATCCAAAGAGAGGGAGTATTGGGATCATAGCGCCGCTAGCCATCGGGCTCATAGTTGGG 600
Query 761 GCAAACATTTTGGTGGGAGGACCTTTCGATGGAGCCTCTATGAATCCGGCTAGAGCCTTT 820
||||||| ||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 601 GCAAACACTTTGGTGGGAGGACCCTTCGATGGGGCCTCTATGAATCCGGCTAGAGCCTTT 660
Query 821 GGTCCAGCATTAGTGGGATGGAGGTGGAGTAACCATTGGATCTATTGGGTTGGACCGTTC 880
||||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 661 GGTCCAGCACTAGTGGGATGGAGATGGAATAACCATTGGATCTATTGGGTTGGACCGTTC 720
Query 881 ATTGGTGGTGCACTCGCCGCACTGATCTATGAGTACATGATCATCCCCAGCGTGAACGAA 940
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 721 ATTGGTGGTGCACTCGCCGCTCTTATCTATGAGTACATGATCATCCCCAGCGTGAACGAA 780
Query 941 CCTCCTCACCACAGTACCCACCAACCATTGGCTCCGGAAGATTACTAGACCGGAGCA 997
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 781 CCTCCTCACCACAGTACCCACCAACCATTGGCTCCGGAAGATTACTAGGCCGGAGCA 837
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43765108716
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5