BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G17820.1
Length=2856
Score E
Sequences producing significant alignments: (Bits) Value
Ahg920705 jgi|Araly1|920705|scaffold_101986.1 3825 0.0
> Ahg920705 jgi|Araly1|920705|scaffold_101986.1
Length=2435
Score = 3825 bits (2071), Expect = 0.0
Identities = 2331/2454 (95%), Gaps = 28/2454 (1%)
Strand=Plus/Plus
Query 215 TCAGAGCTTCCGGGAGATGTTTTCGTTTGTGGGTTTCGTGGTGTTCCTCTCTGGATTTTT 274
||| ||||||| |||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 5 TCACAGCTTCCCGGAGATGTTTTCGTTTGTGGGTTTCGTGGTGTTCTTATCTGGATTTTT 64
Query 275 CCTGGGAATTCTCGCCGTCTTATCCGCTGAAGCTGC-GGGATTTATGTATCTCCTGAAGC 333
||||||||||||||||||||| |||||||||| || ||| || ||||||||| ||||||
Sbjct 65 CCTGGGAATTCTCGCCGTCTTGGCCGCTGAAGCAGCAGGG-TTGATGTATCTCTTGAAGC 123
Query 334 GATTGAATCGCAAGAGAGATCGTATTGAGTCAAAACCCGTCTCTGATCCATCTATCAAGG 393
|||| ||||| ||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 124 GATTTAATCGGAAGAGAGATCGGATTGAGTCAAAACCCGTCTCTGATCCATCTACCAAGG 183
Query 394 ATTTTAATCCTCGCGAATCCATCGATTTCTGTATCAACAAACAGGGAGTGGTATGGATTT 453
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 184 ATTTTGATCCTCGCGAATCCATCGATTTCGGTATCAACAAACAGGGAGTGGTATGGATTT 243
Query 454 TGGAATTGGATGAAGGTCTGAAGAACTGGATGAAGGAAAAGTTACCAAAAGAGCAGAAGA 513
|||| |||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 244 TGGAGTTGGATGAAGGTATAAAGAACTGGATGAAGGAAAAGTTACCAAAAGAGCAGAAGA 303
Query 514 GGAAGAGAGGCTTATTGGAGATTCATCCACTTCGAAAGTTCGCTCGAATCAAAGATCACA 573
|||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 304 GGAAGAGACACTTGTTGGAGATTCATCCACTTCGAAAGTTCGCTCGAATCAAAGATCACA 363
Query 574 AGCTTATCTTGTCAGATGCTGATAGCACTCAGAGTGAGACTACCGTTTCTTTAATAGGTT 633
|||| |||||||||||||||||| |||||||| || ||||||| |||||||||| |||||
Sbjct 364 AGCTCATCTTGTCAGATGCTGATGGCACTCAGGGTCAGACTACAGTTTCTTTAAAAGGTT 423
Query 634 GCAGTATTGAGGCTGTTTCAGGCTCTGATCTCCCTACAAGAAAATGGGCCAAAAGGTTTC 693
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 424 GCAGTATTGAGGCTGTTTCAGGATCTGATCTCCCTACAAGAAAATGGGCCAAAAGATTTC 483
Query 694 CAATAAAAGTTGAAAGCAAGATTTCTCCAGCCTTATACAAGGGAAACCAGGTGTTTTACA 753
| |||||||||||| ||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 484 CTATAAAAGTTGAAGGCAAGATTTATCCAGCCTTATACAAGGGAAACCAAGTGTTTTACA 543
Query 754 TCTATCTGGAGACTTCTTGGGAAAAGGAATCATGGTGTAAAGCCCTTCGTCTTGCTTCTT 813
||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 544 TCTATCTCGAGACTTCTTGGGAAAAAGAATCATGGTGTAAAGCCCTTCGTCTTGCTGCTT 603
Query 814 GTGAAAATCAGGAAAGGTTTATTTGGTACTCCACCAAATTGAAAGAAGATTTCCGTAATT 873
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 604 GCGAAAATCAGGAAAGGTTTATTTGGTACTCCACCAAATTGAAAGAAGATTTCCGTAATT 663
Query 874 ATGTGACTTCTCTTAATGTTGCATATCCTTCATTTATGAAACCATCACTTGGCTTTAGTT 933
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 664 ATGTGACTTCTCTTAATGTTGCATATCCTTCATTTATGAAACCATCTCTTGGGTTTAGTT 723
Query 934 TTGAGACACTTGACAAAGGGAACAGAACGGATGGTTCATCCTCAAAGGTTCGCTTGTTCT 993
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 724 TTGAGACACTTGACAAAGGGAACAGAACGGATGGTTCATCCTCAAAGGTTCGCTTGTTCT 783
Query 994 TGAAGAAATTTTCTAGAAAGCGATCAAATCGTGAAGACAGGAAAACCTATTCACATCATG 1053
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 784 TGAAGAAATTTTCTAGAAAGCGATCAAATCGTGAAGACAGGAAAACCTATTCACAACATG 843
Query 1054 GAAGTAGCTCAGGGAAGTGCTTTCCAGGAAAGAATAATATGACAGATGATACTGATGTGC 1113
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 844 GAAGTAGCTCAGGGAAGTGCTTTCCAGGAAAGAATAATATTACAGATGATACTGATGTGC 903
Query 1114 CTATTTTTTCACGTTCTGTGAGCCATAGCAGTCATATTTCTGGGGTCAGTCATCTTTCTG 1173
||||||||||||||||||| | ||| |||| || |||||| ||||||
Sbjct 904 CTATTTTTTCACGTTCTGT--G----AGC---CATA--------GT-AGTCATGTTTCTG 945
Query 1174 GGGTTTCAGATGGAGACTCTGAAGAAAAGGTTGACATGGATGAAGGAACATTAGCGTTGA 1233
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 946 GGGTTTCAGATGGAGATTCTGAAGACAAGGTTGACATGGATGAAGGAACATTAGCGTTGA 1005
Query 1234 ACTTGCTCATTTCTAGGCTATTTTTCGATCTCAAACGGAAAACAGGAGTGAAGAATTCAG 1293
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1006 ACTTGCTCATTTCGAGGCTATTTTTCGATCTCAAACGGAAGACAGGAGTGAAGAATTCAG 1065
Query 1294 TGCAAGCACGAATTCAGCGGTTGTTATCTAACATGAGGACTCCGAGCTACATAGGCGAAC 1353
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1066 TGCAAGCACGAATCCAGCGGTTGTTATCTAACATGAGGACTCCGAGCTACATTGGCGAAC 1125
Query 1354 TAATCTGCTCCGATGTTGACACTGGAAATCTCCCACCTCATATACATGCTACACGGGTTC 1413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1126 TAATCTGCTCCGATGTTGACACTGGAAATCTCCCACCTCATATACATGCTACACGGGTTC 1185
Query 1414 TTCCAATGGAGATGAGTGGTGTGTGGGCATTCGAACTAGATATTGAATACTCTGGTGACG 1473
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1186 TTCCGATGGAGATGAGTGGTGTGTGGGCATTCGAACTAGATATTGAATACTCTGGTGACG 1245
Query 1474 TGGTGATTGACGTTGAAACACGGGTTGACATCCGTGAGGTGGATCTGCAACAA-GGCATA 1532
|||| ||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 1246 TGGTAATTGACGTTGAAACACGGGTTGACATCCGTGAGGTGGATCTGCAA-AATGGCATA 1304
Query 1533 ACCGATACAAGGTTGCAGCCAAGGTCTTCAGGGGTAGTCCCGTCAAATTTTGCTGAAGGT 1592
||||||||||||||||||||||| |||||||||| |||||| |||||||| ||||||| |
Sbjct 1305 ACCGATACAAGGTTGCAGCCAAGTTCTTCAGGGGAAGTCCCATCAAATTTCGCTGAAGTT 1364
Query 1593 GTTGAAGATTTTGAAAAGCAATTAGTCTTCCCTGTGGAAACTGTTAATGCAGGAGAAGTG 1652
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 1365 GTTGAAGATTTTGAAAAGCAATTAGTCATCCCTGTGGAAACTGTTGATGCAGGAGAAGTG 1424
Query 1653 AAAAATGGTGGAGCCAATAAAGCAGATGAATCCAAGAGCTCAAGAGGTACGAAGGCAGCT 1712
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 1425 AAAAATGGTGGAGCCAATAAAGGAGATGAATCCAAGAGCTCAAAAGGTACGAAGGCAGCT 1484
Query 1713 CCAAATGGTGTATCCAGGTGGAAGTCTATTCTTAAAACAATTGCTGAACAAGTTTCTCAG 1772
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 1485 CCAAATGGTGTATCCAGGTGGAAGTCTATTCTTAAAACAATTGCAGAACAAGTTTCCCAG 1544
Query 1773 GTGCCTATCTCTTTGTCAATACGGGTGTCTTCTCTTCGAGGGACACTGCGGGTACACATG 1832
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1545 GTGCCTATCTCTTTGTCAATAAGGGTGTCTTCTCTTCGAGGGACACTGCGGGTACACATG 1604
Query 1833 AAGCCGCCTCCTTCTGATCAATTATGGTTTGGATTCACGAGCATGCCGGATATCGAATTC 1892
|||||||||||||||||||||||||||||||| |||||||||||||| ||||| | ||||
Sbjct 1605 AAGCCGCCTCCTTCTGATCAATTATGGTTTGGGTTCACGAGCATGCCAGATATAGCATTC 1664
Query 1893 GATCTCGCATCTTCTGTTGGGGAACACAAAATCACCAACAGCCATGTTGCAATGTTCTTG 1952
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1665 GATCTCGCATCTTCTGTTGGGGAGCACAAAATCACCAACAGCCATGTTGCAATGTTCTTG 1724
Query 1953 ATCAACCGGTTTAAGACGGCAATACGAGAAGCGGTGGTTCTTCCCAACTGTGAAAGCCTA 2012
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1725 ATCAACCGGTTTAAAACGGCAATACGAGAAGCGGTGGTTCTTCCCAACTGTGAAAGCCTA 1784
Query 2013 ACGATTCCTTGGATGATTGCTGAAAAAGATGATTGGGTTCAACGCAAAGCCGCTCCATTC 2072
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1785 ACGATTCCTTGGATGATTGCTGAAAAAGATGATTGGGTCCAACGCAAAGCCGCTCCATTC 1844
Query 2073 ATGTGGCTGAATCAAGAAAACGATCACAATACCTCCCATGCAACAGAAGCGAGATCTAAA 2132
|||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 1845 ATGTGGCTAAATCAAGAAAACGACCACAATAGCTCCCATGCAACAGAAGCGAGATCTAAA 1904
Query 2133 TCTGACAAGCCACCGACTTCGTTCTCATGTCTTCAAGCTGAGCAAATGCAGAGAACTGCA 2192
|||||||||||||| |||| || ||||||| |||| ||||||||||||||||||||||||
Sbjct 1905 TCTGACAAGCCACCTACTTGGTCCTCATGTGTTCAGGCTGAGCAAATGCAGAGAACTGCA 1964
Query 2193 AACGCCACCCAGAAGATTATTTCTGAAATAGGGACATTGGCTTCTTCCTCCTGTGCTCAG 2252
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1965 AACGCCACCCAGAAGATTATTTCTGAAATAGGGACACTGGCTTCTTCCTCCTGTGCTCAG 2024
Query 2253 TCTGAGCAAGTGCAGAAAGCGGCCACTGCTTTCCAGAAACAGAATACTGAAGCAGAAGCT 2312
||||||||| |||||||||||||||||||||||||||||| ||| ||||||||||| |||
Sbjct 2025 TCTGAGCAAATGCAGAAAGCGGCCACTGCTTTCCAGAAACCGAACACTGAAGCAGAGGCT 2084
Query 2313 ATTATGTCTACGCCATTGTCAAACT-CCACAACTGTAACAATAGAGAATGATAAATCCTT 2371
|||||||| |||||||||||||| | ||||||||||||||||||||| ||||||||||||
Sbjct 2085 ATTATGTCAACGCCATTGTCAAA-TACCACAACTGTAACAATAGAGAGTGATAAATCCTT 2143
Query 2372 GGAAGAACTGAAAACTCCACTACTGGTACCCAGCAGCAGT-AACAAGCAGGAGACGAACT 2430
||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||
Sbjct 2144 GGAAGAACTGAAAACTCCACTACTGCTACCCAGCAGCAGTGAA-AAGCAGGAGACGAACT 2202
Query 2431 CAAGAGGGAGTAGCAGAGAGGTTTCTGCTGTTCAGTCACCATCTAGGTCTGTAGCTTCAA 2490
|||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct 2203 CAAGAGGGAGTAGCAGAGAGGTTTCTGCTGTTCAATCACCATCTAGGTCTGTATTTTCAA 2262
Query 2491 GCGAAGAAGATGATTCAAGGGGGAAA-AAACAGGGAAGAAGAGCAAGAATGTTGGATCTT 2549
|||||||||||||||||||||| ||| |||||||||||| ||||||| ||||| ||||||
Sbjct 2263 GCGAAGAAGATGATTCAAGGGG-AAAGAAACAGGGAAGACGAGCAAGGATGTTAGATCTT 2321
Query 2550 GGGAAGAAAATGGGGGAGAAATTGGAGGAGAAGAGGCGTCACATGGAGGAGAAGAGTAGA 2609
||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 2322 GGGAAAAAAATGGGGGAGAAGTTGGAGGAGAAGAGGCGTCACATGGAGGAAAAGAGTAGA 2381
Query 2610 CAGATTGTTGAAAAGATGAGAGGACCTTCTTAACATGAGAAGGAAGAAGCTTTT 2663
||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2382 CAGATTGTTGAAAAGATGAGAGGACCTTCCTAACATGAGAAGGAAGAAGCTTTT 2435
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 107795393350
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5