BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G17830.1
Length=1589
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471996 jgi|Araly1|471996|fgenesh2_kg.1__1950__AT1G17830.1 1829 0.0
> Ahg471996 jgi|Araly1|471996|fgenesh2_kg.1__1950__AT1G17830.1
Length=1513
Score = 1829 bits (990), Expect = 0.0
Identities = 1230/1338 (92%), Gaps = 48/1338 (4%)
Strand=Plus/Plus
Query 12 aaaaagagagaaagagcc--a-gag-gagagagagaAGCTTTTGGTCGTGTTCGTTTTTC 67
|||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||
Sbjct 1 AAAAAGAGAGAAAGAGCCAGAGGAGAGAGAGAGAGAAGCTTTTGGTCGTGTTCGTTTTTC 60
Query 68 TTTCTTTCTTTCTTGCAATAATAAATAGAAGCAAATCATACTCCAAAAACCTTCATTCAA 127
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 -TTCTTTCTTTATTGCAATAATAAATAGAAGCAAATCATACTCCAAAAACCTTCATTC-- 117
Query 128 ACCTTGCTACCACTTTCTTCCCCTAAAAGATTTCATCT-AAATTCAGTAAACTCATCTAC 186
| | | | ||||||||||||| |||||||||||||||||||||
Sbjct 118 A-------A--A----------C--AAAGATTTCATCTAAAATTCAGTAAACTCATCTAC 156
Query 187 --GAGTTCTTGTTTTTC-TT---TA-AATTTTCTAAGAGAGAGCC---TAAGCTGTTTAA 236
||||||||||||||| || || |||||||| |||||||||| ||||||||||||
Sbjct 157 GAGAGTTCTTGTTTTTCGTTAAATATAATTTTCTTAGAGAGAGCCTAATAAGCTGTTTAA 216
Query 237 TATAGTCATCTAATATTTAGAGAGATGGTGGGAGAGAGAATGTGGTGGTGGTCATCATCG 296
|||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 217 TATAGTAATCTAATATTTAGAGAGATGGAGAGAGAGAGAATGTGGTGGTGGTCATCATCC 276
Query 297 TCGACGAAACTCCGATCAAACCTTGAAAGATTTCTCAGAGGAATCACTCCAAAACCTCCT 356
|| ||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||
Sbjct 277 TCCACGAAACTCCGATCAAACCTTGAGAGATTTCTTAGAGGAATCACTCCAAAGCCTCCT 336
Query 357 TCTTTCTCTTTATCACAGAGCTGCAAGAATGATTTGAACAGTTTGTGGATCCATGAGAAC 416
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 337 TCTTTCTCTTTATCACAGAGCTGCAAGAACGATTTGAACAGTTTGTGGATCCATGAGGAC 396
Query 417 AAAGATGAGATTGAATATTTCAGGCTTAGTGATCTTTGGGACTGTTTTGATGAGCCAAGC 476
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 397 AAAGATGAGATTGAATATTTCAGGCTTAGTGATCTTTGGGACTCTTTTGATGAGCCAAGC 456
Query 477 GCGTATGGACTTGGATCAAAGGTCGACTTAAACAATGGTGAATCCGTTATGCAGTACTAT 536
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 457 GCGTATGGACTCGGATCAAAGGTCGATTTAAACAATGGTGAATCCGTTATGCAGTACTAT 516
Query 537 GTCCCGTATCTATCCGCCATTCAAATCTATACTAACAAATCTACAGCCATTTCTAGGATT 596
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 517 GTCCCGTATCTATCCGCCATTCAAATCTATACTAACAAATCTACAGCTATTTCCAGGAAC 576
Query 597 CATAGTGATGTGGTTGATTGTGAGAGTGAATGTTGGAGTGATGATAGTGAGATTGAGAAG 656
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 577 CAGAGTGATGTGGTTGATTGTGAGAGTGAATGTTGGAGTGATGATAGTGAGATTGAGAAG 636
Query 657 TTGTCTAGGTCAATGAGCAGTGGTTCTAGCAAAATATGGGATTCTGTTTCTGATGATTCG 716
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 637 TTTTCAAGGTCAATGAGCAGTGGTTCTAGCAAAATATGGGATTCTGTTTCTGATGATTCG 696
Query 717 GGTTATGAGATCGATGGTACTTCTTCATTGATGCGAGATAAGCTCGGTTCTATTGATTTT 776
|||||||||||||||||| |||||| ||||||||||||||||||||||| |||||||||
Sbjct 697 GGTTATGAGATCGATGGTGTTTCTTCTTTGATGCGAGATAAGCTCGGTTCCATTGATTTT 756
Query 777 CAGTACTTTGAGTCCGTTAAACCGCACTTGCGTGTTCCTCTTACCGCTAAGGTAAATGAA 836
||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct 757 CAGTATTTTGAGTCCGCTAAACCGCACTTGCGGGTTCCTCTTACCGCTAAGGTAAATGAC 816
Query 837 TTGGCTGAGAAGTATCCGGGACTTTCGACTCTAAGGAGTGTTGATTTGTCTCCAGCAAGT 896
||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct 817 TTGGCTGAGAAGTATCCCGGACTTGCGACTCTAAGGAGTGTTGATTTGTCTCCAGCAAGT 876
Query 897 TGGTTGGCCATTGCTTGGTATCCAATTTACCACATTCCCTCTCGGAAGACCGATAAAGAT 956
||| ||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 877 TGGATGGCCATTGCTTGGTATCCAATTTACCACATTCCCTCTCGGAATATGGATAAAGAC 936
Query 957 TTATCGACATGTTTCTTGAGTTATCATACTTTATCTTCGGCTTTCCAAGGTAACTTGATA 1016
|||||||| |||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 937 TTATCGACGTGTTTCTTGAGTTATCATACGCTATCTTCGGCTTTTCAAGGTAACTTGATA 996
Query 1017 GAGGGAGACGATGAGATTAACGAAACCATGAAAGAAGAAACATTGTGTTTTGATGAAGGA 1076
||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||| | |
Sbjct 997 GAGGGAGGGGATGAAATTAACGAAACCATGGAAGAAGAAACATTGTGTTTTGATGATGAA 1056
Query 1077 CCGGTGACCAAGAGTA-TACCTTTGGCTCCTTTTGGTTTAGTTAGTTACAA-ATTGCAAG 1134
| ||||||||||| | | |||||||||||||||||||||||||||||||| || |||||
Sbjct 1057 CAAGTGACCAAGAG-ACTTCCTTTGGCTCCTTTTGGTTTAGTTAGTTACAAGAT-GCAAG 1114
Query 1135 GAGATTTGTGGAGGAATCAAGAATG-TGGTGACCAAGGACGTATAGTTTATCTTCGCAGT 1193
||||||||||||| |||||||||| || |||||||| |||| |||||||||| | ||||
Sbjct 1115 GAGATTTGTGGAGTAATCAAGAATCATG-TGACCAAGAACGTCTAGTTTATCTCCACAGT 1173
Query 1194 GCAGCTGATTCGTGGCTGAAACAGCTTAATGTTCAAGATCACCATGACCATAGCTTCTTC 1253
||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 1174 GCAGCTGATTCGTGGCTGAAACAGCTTAATGTTCATGATCACCATGACTATAGCTTCTTC 1233
Query 1254 TCCATGAACATGAGCTTGTAGATCCaaaaaaaGAGAGCCAAGActctgtttttttgctct 1313
||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||
Sbjct 1234 TCCATGAACATGAGCTTGTAGATCCAAAAAAAGAG--CCATGACTCTGTTTTTT-GCTCT 1290
Query 1314 gtttttagttgttttctt 1331
|||||||| |||||||||
Sbjct 1291 GTTTTTAGCTGTTTTCTT 1308
Score = 259 bits (140), Expect = 4e-68
Identities = 222/259 (86%), Gaps = 15/259 (6%)
Strand=Plus/Plus
Query 1332 agccaagactctgtttttttgctctgtttttagttgttttaAGAATCTTAGGTATATAGC 1391
||||| ||||||| ||||||||||||||||||| || ||| |||| ||||||||||
Sbjct 1267 AGCCATGACTCTG-TTTTTTGCTCTGTTTTTAGCTG-TTT-----TCTT-GGTATATAGC 1318
Query 1392 AACTCG-AAATGTAGAGGTTTCGTTTCCTTCTGCTTGAACCCGTGGAAAATAAAGAGAAT 1450
||||| | ||||||||||| ||||||||||| | |||||| |||||||||||||||||
Sbjct 1319 TACTCGTCATTGTAGAGGTTTTGTTTCCTTCTG-TAGAACCCATGGAAAATAAAGAGAAT 1377
Query 1451 TAGGCTTGTTTTTGGCTTTATGAGA-AGGAAGttttt-tttGTTTTGTGAGAGATTATGG 1508
||||||||||||||||||| | || | || | | | |||||||| |||||||||||||
Sbjct 1378 TAGGCTTGTTTTTGGCTTTTT-AGTTATGA-GATAATCTTTGTTTTATGAGAGATTATGG 1435
Query 1509 AAATGAAACCTATGAGTATTGTCTCAAGtttttttttCTAGGATGTGTTTTATGTTTGTA 1568
||| ||||| | ||||| |||||||| |||||||||||||| |||||||||| |||||||
Sbjct 1436 AAACGAAACTTGTGAGTTTTGTCTCATGTTTTTTTTTCTAG-ATGTGTTTTAAGTTTGTA 1494
Query 1569 TGGATATCTGACCAGATAA 1587
||||| |||||||||||||
Sbjct 1495 TGGATTTCTGACCAGATAA 1513
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59535052935
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5