BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G17850.2
Length=2011
Score E
Sequences producing significant alignments: (Bits) Value
Ahg911600 jgi|Araly1|911600|Al_scaffold_0001_1854 1973 0.0
Ahg471997 jgi|Araly1|471997|fgenesh2_kg.1__1951__AT1G17840.1 573 2e-162
> Ahg911600 jgi|Araly1|911600|Al_scaffold_0001_1854
Length=1347
Score = 1973 bits (1068), Expect = 0.0
Identities = 1260/1353 (93%), Gaps = 12/1353 (1%)
Strand=Plus/Plus
Query 121 ATGAGAGTTTCGCCGGCGGCAACACTCTCAGTCTCTTTGACTACTCCACTACCTATAACT 180
||||||||||||||||||| |||||||||||||||||| |||| |||||||||| | ||
Sbjct 1 ATGAGAGTTTCGCCGGCGGTAACACTCTCAGTCTCTTTAACTATTCCACTACCTCTTGCT 60
Query 181 TTAACCAAAGCTCGTTTCTCCGGCGAACCATTGCGACTCAAACAATATGTTTTGAGTAAT 240
| ||||||||||||||||||||||| || || ||| |||||||||||||||| | | ||
Sbjct 61 TCAACCAAAGCTCGTTTCTCCGGCGTCCCTTTTCGATTCAAACAATATGTTTTCAATTAT 120
Query 241 CAGATT-TGCTCCCGACCAAAACATCTCCTC-TCAGAGTTTAAACCCACCAGAAGATGGA 298
|||||| | ||| |||||| || |||| || | |||| |||||||||||||||||||
Sbjct 121 CAGATTCT-CTCGCGACCAGGACGTCTCGTCGT-AGAG---AAACCCACCAGAAGATGGA 175
Query 299 CCTTCTCCTGCAAATGCCGTAACAGAGGAAGAAATGGTTACGCGAAATTCGATGACGAAG 358
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 176 CCTTCTCCTGCAAATGCCGAAACAGAGGAAGAAATGGTTACGCGAAATTCGATGACGAAG 235
Query 359 GAGAAGATTTCATTGTTGTTAACTTCTATCGGTTTGTATCAATCGGAGATCCTGAGGCTG 418
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 236 GAGAAGATTTCATTGTGGTAAACTTCTATCGGTTTGTATCAATCGGAGATCCTGAGGCTG 295
Query 419 AGATTGAGAAGCACCTCTCATTCTTAAAGGATTTGAATATACGAGGTCGAATATATCTCA 478
|||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 296 TGATTGAGAAGCACCTCTCTTTCTTAAAGGATTTGAATATACGAGGTCGGATATATCTCA 355
Query 479 ATGAACAAGGAATCAACGCGCAGTACAGTGGACCATCTAAAGATGCTCTTGCATATGTTG 538
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 ATGAACAAGGAATTAACGCGCAGTACAGTGGACCATCTAAAGATGCTCTTGCATATGTTG 415
Query 539 AATGGTTAAAAGGAGATGATAGATTCTCGGATTTGCTTGTCCAGATGTCTCCCGCTATGA 598
||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |
Sbjct 416 AATGGTTAAAAGGAGATGAAAGATTCTCGGATTTGCTTGTCCAGATGTCTCCTGCTATTA 475
Query 599 ATAGG-CATGCATTCCCTAAGTTGAAGCTACAGAACAAACCCTCCTTAGTGCAGTATGAG 657
|| || |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 476 AT-GGTCATGCATTCCCTAAGTTGAAGCTACAGAACAAACCCTCCTTAGTTCAGTATGAA 534
Query 658 GGAGGAATTTCACACCTTCCCCTACTTGATCCACCCATGCGAGCAAAACCCTTAGAGCCA 717
|||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |||
Sbjct 535 GGAGGAATTTCACACCTTCCTCTACTTGATCCACCGATGCGAGCAAAACCCTTAGAACCA 594
Query 718 TCTGAATGGAAAAGGAAACTGAAAGACTTAACGGATGATGATGAAGCCTCACCTTCA--A 775
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 595 TCTGAATGGAAAAGAAAACTGAAAGACTTAACGGATGATGATGAAGCATCACCTTCATCA 654
Query 776 A-TAGTGGCAAAAGTTACATATTATTGGATGTCAGAAATGGTTATGAGTGGGATGTTGGT 834
| |||||||| ||| | ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 655 AGTAGTGGCAGAAGCTGCATATTATTGGATGTCAGAAACGGTTATGAGTGGGATGTTGGT 714
Query 835 CACTTTCGTGGGGCACATAGACCTGAAGTTGATTGCTTTCGGAACACTTCTTTTGGGCTA 894
|| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 715 CATTTTCGTGGGGCACGTAGACCTGAAGTTGATTGCTTTCGGAACACTTCTTTTGGACTA 774
Query 895 TCTGATGAAAAGGAAGCCCCTTCAGACCCTTTGATAAATGTTGACAAGGAAAAGACAGAT 954
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 775 TCTGATGAAAAGGAAGCTCCTTCAGACCCTTTGATAAATGTTGACAAGGAAAAGACAGAT 834
Query 955 ATACTGATGTATTGTACTGGAGGTATACGTTGTGATGTGTATTCAACAGTTTTGAGACAG 1014
||||||||||| ||||||||||| ||||| || ||||| |||||||||||||| ||||||
Sbjct 835 ATACTGATGTACTGTACTGGAGGCATACGCTGCGATGTATATTCAACAGTTTTAAGACAG 894
Query 1015 CGGGGTTTCAAGAACCTGTATACATTGAAGGGTGGAGTTTCCCATTACCTTAAAGAAGAA 1074
|||||||||||||||||||||||| |||||||||||||||||||||| || ||||||||
Sbjct 895 CGGGGTTTCAAGAACCTGTATACACTGAAGGGTGGAGTTTCCCATTATCTGGAAGAAGAA 954
Query 1075 GGCACCGCCGAATGGGTTGGAAATCTGTTTGTGTTTGACTCTCGTCTTTCTCTCCCACCA 1134
||||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 955 GGCACAGCTGAATGGGTTGGAAATCTGTTTGTGTTTGACTCTCGTCTCTCTCTCCCACCA 1014
Query 1135 GCTGCCTACAATGACAACGTCGTGGATAAAGCCGTAGGTGATAACGTCGTGGATGAAGCC 1194
| |||||||| |||||| | |||||||||| ||| | |||| |||| ||||||| |||||
Sbjct 1015 GTTGCCTACAGTGACAAGGCCGTGGATAAACCCGGAAGTGACAACGCCGTGGATAAAGCC 1074
Query 1195 GGAAGAACTCCACAAACGCCCGTGGATACAAGTTTTGCAAGATGCTATCTTTGTAATTCC 1254
|||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||
Sbjct 1075 GGAAGAACTCCACAAACGCCCGTGGATACAAGTTTTGCAAAATGCTATATTTGTGATTCA 1134
Query 1255 CAAGTTCAGGAACTAAGACATCGGAACTGTGCTAACCTTGACTGCAATCGGCTTTTCTTA 1314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1135 CAAGTTCAGGAACTAAGACATCGGAACTGTGCTAACCTTGACTGCAATCGGCTTTTCTTA 1194
Query 1315 TGCTGTGCAGAATGTGTTGTCGACTTGAAGGGTTGTTGCTGTTCAGACTGCATTAGTGCT 1374
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||| ||||
Sbjct 1195 TGCTGTGCAGAATGTGTTGTCGACTTGAAGGGATGTTGCTGTTCAAACTGCATTACTGCT 1254
Query 1375 CCCAGACTTAGACCGGTCTTGCATGGAGTAAAGAGATATGAAAAATGGCATGTATATCGC 1434
||| |||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1255 CCCCGACTTAGACCTGTCTTGCATGGAGTAAAGAGATATGAGAAATGGCATGTATATCGT 1314
Query 1435 GATTCAGAAGAGCAAAATGCGCCATTGGTTTGA 1467
|||||||||| ||||| ||||||||||||||||
Sbjct 1315 GATTCAGAAGTGCAAACTGCGCCATTGGTTTGA 1347
> Ahg471997 jgi|Araly1|471997|fgenesh2_kg.1__1951__AT1G17840.1
Length=2838
Score = 573 bits (310), Expect = 2e-162
Identities = 403/444 (91%), Gaps = 22/444 (5%)
Strand=Plus/Minus
Query 1570 TTGGTCTACCATGGGCAAGTGATCAGATGAG-AACAGCACACAGCAAAAGCAGATGAGTG 1628
|||| ||| |||||||||||||||||||||| |||||||||||| ||||||||| |||||
Sbjct 2838 TTGGCCTATCATGGGCAAGTGATCAGATGAGAAACAGCACACAGAAAAAGCAGAAGAGTG 2779
Query 1629 CTGAAGCAGAAGCTAATGAAGTTTAATTACAAGCCTGTTCCAGGAAGAACTAGTAGTCAT 1688
|||||| |||||||||||||| || | |||| | | || |||||||
Sbjct 2778 CTGAAGAAGAAGCTAATGAAG-TTGA--ACAA--C---T---------AC---TAGTCAT 2739
Query 1689 TCTTTGAGGTTCTTCAGGTGTAACACTTGTCAGAACTCAGAACTCAA-TTTTCATTTCAA 1747
|||| |||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 2738 TCTTAGAGGTTCTTCGGGTGTGACACTTGTCAGAACTCAGAACTCAATTTTTCATTTCAA 2679
Query 1748 CATGTACAAACAAAGCTTGTAACAATTCACAACTTAATCTATCTGCTGTAATTTCGGCAC 1807
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2678 CATGTACAAACAAAGCTTGTAACAATTCACAACTTAATCTATCTGCTGTAATTGCGGCAC 2619
Query 1808 AATGCAAACTGTAATGCAACAAGATGGTACTTGTTAATACCAAAGTAGAAAAATAAATGT 1867
||||||||||||||||||||||||| || ||||||| ||||||||||||| |||||||||
Sbjct 2618 AATGCAAACTGTAATGCAACAAGATAGTGCTTGTTACTACCAAAGTAGAAGAATAAATGT 2559
Query 1868 AGTAGTGATTATTTTAGACAAATCCGTGGTTTTAATATTTCTATAACTAACACACTCGAA 1927
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2558 AGTAGTGATTATTTTAGACAAATCCGTGGTTTTAATATTTCTATAACTAACACACTTGAA 2499
Query 1928 GTTTCTCTGCTGTCACATTACATGGAGTTTTGATATTGCAGGCCTAGTGAAATATGGTGG 1987
||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2498 GTTTCTCAGCTGTCACATTACATGGAGATTTGATATTGCAGGCCTAGTGAAATATGGTGG 2439
Query 1988 CTTTGCTTTGATCAATTTTCATGA 2011
||||||||||||||| |||| |||
Sbjct 2438 CTTTGCTTTGATCAACTTTCTTGA 2415
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75609136325
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5